Wall clock time and date at job start Wed Apr 1 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 C 1.53000 * 114.34164 * 139.68416 * 18 17 16 20 20 N 1.46495 * 109.47256 * 91.07516 * 19 18 17 21 21 C 1.34777 * 120.00419 * 179.97438 * 20 19 18 22 22 O 1.21619 * 119.99610 * 0.02562 * 21 20 19 23 23 C 1.43203 * 120.00304 * 179.97438 * 21 20 19 24 24 C 9.68517 * 134.68721 * 279.65659 * 13 1 2 25 25 C 9.07868 * 152.50376 * 319.64810 * 16 1 2 26 26 C 1.53006 * 117.49304 * 143.63344 * 25 24 23 27 27 C 1.52999 * 117.49641 * 74.97890 * 25 24 23 28 28 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 40 40 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 41 41 H 1.08999 * 114.16922 * 272.37539 * 18 17 16 42 42 H 1.09003 * 109.47227 * 211.07946 * 19 18 17 43 43 H 1.09002 * 109.47568 * 331.07706 * 19 18 17 44 44 H 0.97004 * 120.00264 * 0.02562 * 20 19 18 45 45 H 1.08992 * 115.55071 * 289.29913 * 25 24 23 46 46 H 1.08992 * 117.50065 * 359.97438 * 26 25 24 47 47 H 1.09006 * 117.49342 * 145.02037 * 26 25 24 48 48 H 1.09008 * 117.49500 * 214.97766 * 27 25 24 49 49 H 1.08994 * 117.50092 * 359.96786 * 27 25 24 50 50 H 1.08994 * 113.48196 * 253.46980 * 28 16 15 51 51 H 1.09003 * 113.47819 * 23.94188 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 6 3.8047 1.1443 6.4790 20 7 4.9834 1.7595 7.0940 21 6 5.7042 1.0741 8.0035 22 8 5.3763 -0.0553 8.3133 23 6 6.8568 1.6753 8.6043 24 6 7.7986 2.1694 9.0990 25 6 8.9846 2.7864 9.7164 26 6 9.3484 4.2076 9.2819 27 6 10.2034 3.0239 8.8225 28 6 1.8567 1.6375 4.8718 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 4.0915 1.0140 3.8190 40 1 4.3727 2.8069 3.7655 41 1 3.1371 3.1503 5.8655 42 1 3.0805 0.8922 7.2537 43 1 4.1017 0.2384 5.9507 44 1 5.2448 2.6605 6.8473 45 1 9.1680 2.5154 10.7560 46 1 8.7101 4.6856 8.5388 47 1 9.7716 4.8715 10.0358 48 1 11.1888 2.9096 9.2743 49 1 10.1275 2.7231 7.7777 50 1 0.9750 2.1328 5.2783 51 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713900873.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:13 Heat of formation + Delta-G solvation = 22.897082 kcal Electronic energy + Delta-G solvation = -29102.899766 eV Core-core repulsion = 25005.045878 eV Total energy + Delta-G solvation = -4097.853888 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.68684 -40.73465 -40.01226 -38.51684 -36.88800 -36.01103 -34.93716 -33.90613 -32.40545 -31.53575 -29.63139 -28.27218 -26.93029 -26.00463 -24.97135 -24.29988 -23.38744 -23.31531 -22.64187 -21.07488 -20.04973 -19.49174 -18.63277 -17.94821 -17.67023 -17.55556 -17.22433 -16.77142 -16.63594 -16.45129 -16.20250 -15.87569 -15.68445 -15.14746 -14.98377 -14.69449 -14.47820 -14.33326 -13.89807 -13.64915 -13.54507 -13.50424 -13.25696 -13.10781 -13.09483 -12.85453 -12.67533 -12.58476 -12.44760 -12.43466 -12.32565 -12.16986 -11.98845 -11.84010 -11.69391 -11.64844 -11.45127 -11.12829 -10.78222 -10.66681 -10.57396 -10.25472 -9.77595 -9.41042 -8.23661 -6.38718 0.36530 1.11855 1.33908 1.36323 1.48056 1.89217 1.93070 2.24728 2.27433 2.40407 2.98472 3.04048 3.05538 3.08490 3.34898 3.62631 3.77627 3.80981 3.97359 4.00414 4.07223 4.09129 4.15724 4.27971 4.32819 4.42025 4.43495 4.46899 4.56455 4.63834 4.69493 4.75704 4.78226 4.85172 4.94013 4.95462 4.98976 5.04920 5.07110 5.09586 5.19516 5.21714 5.29608 5.34252 5.39075 5.57451 5.85361 5.98934 6.06148 6.09720 6.28639 6.70023 6.84801 6.94149 7.27915 7.56193 8.83449 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009146 B = 0.002023 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3060.806778 B =13839.388270 C =16098.030917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.263 3.737 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.496 3.504 14 O -0.584 6.584 15 C 0.016 3.984 16 N -0.483 5.483 17 C -0.001 4.001 18 C -0.106 4.106 19 C 0.136 3.864 20 N -0.701 5.701 21 C 0.635 3.365 22 O -0.568 6.568 23 C -0.266 4.266 24 C -0.027 4.027 25 C -0.089 4.089 26 C -0.149 4.149 27 C -0.156 4.156 28 C 0.016 3.984 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.020 0.980 35 H -0.007 1.007 36 H 0.267 0.733 37 H 0.125 0.875 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.417 0.583 45 H 0.156 0.844 46 H 0.096 0.904 47 H 0.131 0.869 48 H 0.130 0.870 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -4.730 27.343 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.116 4.116 16 N -0.205 5.205 17 C -0.130 4.130 18 C -0.125 4.125 19 C 0.012 3.988 20 N -0.352 5.352 21 C 0.422 3.578 22 O -0.449 6.449 23 C -0.269 4.269 24 C -0.030 4.030 25 C -0.106 4.106 26 C -0.186 4.186 27 C -0.193 4.193 28 C -0.113 4.113 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.038 0.962 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.174 0.826 46 H 0.115 0.885 47 H 0.149 0.851 48 H 0.148 0.852 49 H 0.110 0.890 50 H 0.122 0.878 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.439 -4.198 27.068 27.749 hybrid contribution 1.000 -0.222 -1.097 1.501 sum 5.439 -4.420 25.971 26.900 Atomic orbital electron populations 1.22155 0.94563 1.03492 1.01662 1.21732 0.95330 0.81387 1.03788 1.48312 1.64374 1.15094 1.06198 1.18658 0.95220 0.91395 0.80575 1.21721 0.97853 1.31823 1.06408 0.93018 1.25892 1.02485 0.94532 0.96493 1.70066 1.37699 1.34321 1.14782 0.85355 0.78937 0.78013 0.78417 1.19135 1.19334 1.20734 1.21232 0.77366 0.86676 0.86292 1.90627 1.47244 1.20593 1.87886 1.22647 1.04880 0.94772 0.89256 1.68783 1.07709 1.42299 1.01743 1.24074 0.92536 1.01444 0.94945 1.22828 0.96386 1.00948 0.92378 1.21450 0.86097 0.95491 0.95727 1.45780 1.28716 1.19529 1.41156 1.14766 0.80225 0.83981 0.78797 1.90834 1.70732 1.19556 1.63816 1.20592 0.98406 1.03475 1.04416 1.22109 0.92653 0.94753 0.93457 1.19314 0.89869 1.00923 1.00492 1.23260 1.02047 0.89362 1.03935 1.23245 0.94982 1.01394 0.99640 1.23920 0.98205 1.00732 0.88433 0.92052 0.94475 0.88542 0.91160 0.88247 0.96184 0.98887 0.92425 0.85702 0.88962 0.90402 0.91742 0.86430 0.89470 0.91049 0.74668 0.82647 0.88534 0.85054 0.85172 0.89031 0.87836 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 3.01 5.93 86.38 0.51 3.52 16 3 N -0.61 -26.07 2.46 -826.16 -2.03 -28.10 16 4 C 0.26 14.57 5.16 85.64 0.44 15.01 16 5 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 6 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 7 C 0.00 0.28 5.46 84.65 0.46 0.74 16 8 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 9 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 10 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 C 0.50 21.01 7.74 87.66 0.68 21.69 16 14 O -0.58 -31.52 16.01 -3.03 -0.05 -31.57 16 15 C 0.02 0.43 3.85 85.56 0.33 0.76 16 16 N -0.48 -12.85 5.82 -932.42 -5.43 -18.27 16 17 C 0.00 -0.02 7.29 83.58 0.61 0.59 16 18 C -0.11 -1.65 4.08 -10.45 -0.04 -1.69 16 19 C 0.14 2.05 5.59 86.38 0.48 2.54 16 20 N -0.70 -11.80 5.55 -470.74 -2.61 -14.42 16 21 C 0.63 14.78 7.65 85.49 0.65 15.44 16 22 O -0.57 -17.39 17.09 -4.09 -0.07 -17.46 16 23 C -0.27 -5.68 13.61 30.03 0.41 -5.27 16 24 C -0.03 -0.47 13.47 31.15 0.42 -0.05 16 25 C -0.09 -0.86 6.22 -12.58 -0.08 -0.94 16 26 C -0.15 -0.97 10.21 30.62 0.31 -0.65 16 27 C -0.16 -1.14 10.21 30.62 0.31 -0.83 16 28 C 0.02 0.25 7.26 83.58 0.61 0.86 16 29 H 0.06 1.36 7.22 -2.39 -0.02 1.35 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 33 H 0.10 2.24 6.44 -2.39 -0.02 2.22 16 34 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 35 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 36 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.13 2.68 7.13 -2.39 -0.02 2.66 16 38 H 0.09 2.08 6.56 -2.39 -0.02 2.06 16 39 H 0.08 1.69 7.16 -2.39 -0.02 1.67 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.07 1.19 7.82 -2.39 -0.02 1.17 16 44 H 0.42 5.37 8.44 -92.71 -0.78 4.59 16 45 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 48 H 0.13 0.41 8.14 -2.38 -0.02 0.40 16 49 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.10 1.11 7.87 -2.39 -0.02 1.09 16 Total: -1.00 -87.25 432.31 -0.63 -87.88 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.16 Total: 14.17 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.09 Total: 17.07 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -9.78 Total: -117.69 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -0.12 Total: -49.03 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -87.25 -0.63 -87.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713900873.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.778 kcal (2) G-P(sol) polarization free energy of solvation -87.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds