Wall clock time and date at job start Wed Apr 1 2020 06:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46659 * 2 1 4 4 C 1.34779 * 119.99646 * 89.99987 * 3 2 1 5 5 O 1.21277 * 119.99607 * 179.97438 * 4 3 2 6 6 C 1.50692 * 120.00204 * 359.97438 * 4 3 2 7 7 C 1.52999 * 109.47254 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47366 * 179.97438 * 7 6 4 9 9 N 1.46507 * 109.47333 * 180.02562 * 8 7 6 10 10 C 1.35763 * 119.62574 * 90.00000 * 9 8 7 11 11 C 1.35346 * 120.69996 * 180.26176 * 10 9 8 12 12 C 1.40200 * 119.94844 * 359.49300 * 11 10 9 13 13 C 1.36400 * 119.26552 * 0.51643 * 12 11 10 14 14 C 1.34664 * 119.61962 * 270.02623 * 9 8 7 15 15 O 1.22060 * 119.98985 * 0.02562 * 14 9 8 16 16 C 1.46498 * 120.00036 * 269.99806 * 3 2 1 17 17 H 1.08996 * 110.63849 * 1.69147 * 16 3 2 18 18 C 1.55156 * 110.72051 * 125.02622 * 16 3 2 19 19 C 1.54904 * 101.58301 * 153.86462 * 18 16 3 20 20 N 1.47432 * 104.83231 * 322.99077 * 19 18 16 21 21 C 1.36938 * 125.64818 * 204.09245 * 20 19 18 22 22 H 1.07998 * 119.99668 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00011 * 0.03882 * 21 20 19 24 24 N 1.31617 * 120.00014 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99910 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47169 * 90.00337 * 25 23 21 27 27 H 1.48501 * 109.47205 * 210.00465 * 25 23 21 28 28 H 1.48504 * 109.47056 * 330.00182 * 25 23 21 29 29 C 1.47017 * 108.70131 * 24.13159 * 20 19 18 30 30 H 1.08995 * 109.47245 * 299.99776 * 1 2 3 31 31 H 1.09001 * 109.46867 * 60.00276 * 1 2 3 32 32 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47245 * 240.00224 * 2 1 3 34 34 H 1.08993 * 109.47154 * 119.99564 * 2 1 3 35 35 H 1.09002 * 109.47344 * 59.99818 * 6 4 3 36 36 H 1.08999 * 109.47068 * 299.99660 * 6 4 3 37 37 H 1.09002 * 109.46787 * 59.99853 * 7 6 4 38 38 H 1.08997 * 109.47616 * 300.00152 * 7 6 4 39 39 H 1.09002 * 109.47139 * 60.00250 * 8 7 6 40 40 H 1.08999 * 109.47161 * 300.00160 * 8 7 6 41 41 H 1.08002 * 119.64669 * 359.97438 * 10 9 8 42 42 H 1.07997 * 120.02433 * 179.72990 * 11 10 9 43 43 H 1.08000 * 120.36550 * 180.25754 * 12 11 10 44 44 H 1.07991 * 120.34804 * 179.75472 * 13 12 11 45 45 H 1.08999 * 111.00446 * 271.94445 * 18 16 3 46 46 H 1.09006 * 111.00203 * 35.79064 * 18 16 3 47 47 H 1.09004 * 110.37003 * 204.15620 * 19 18 16 48 48 H 1.08998 * 110.46083 * 81.87327 * 19 18 16 49 49 H 0.96995 * 120.00187 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.88111 * 239.52154 * 29 20 19 51 51 H 1.08997 * 110.01724 * 118.42993 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2428 2.0166 1.1673 5 8 2.6474 3.1599 1.1673 6 6 1.9912 1.3064 2.4723 7 6 2.3232 2.2435 3.6352 8 6 2.0671 1.5226 4.9602 9 7 2.3845 2.4202 6.0738 10 6 1.4174 3.2254 6.5833 11 6 1.6880 4.0667 7.6085 12 6 2.9757 4.1045 8.1617 13 6 3.9460 3.2950 7.6482 14 6 3.6322 2.4373 6.5800 15 8 4.4912 1.7081 6.1106 16 6 2.2624 2.0719 -1.2687 17 1 2.0038 1.4306 -2.1112 18 6 1.4738 3.4068 -1.3277 19 6 2.3401 4.2368 -2.3076 20 7 3.7309 3.8646 -1.9899 21 6 4.8384 4.6312 -2.2369 22 1 5.8184 4.2672 -1.9657 23 6 4.7015 5.8761 -2.8356 24 7 3.5071 6.3199 -3.1654 25 14 6.2123 6.9219 -3.1718 26 1 6.7420 6.6066 -4.5227 27 1 5.8437 8.3590 -3.1077 28 1 7.2521 6.6317 -2.1521 29 6 3.7317 2.5339 -1.3650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.6210 0.4187 2.5302 36 1 0.9431 1.0126 2.5298 37 1 1.6936 3.1314 3.5775 38 1 3.3713 2.5370 3.5776 39 1 2.6964 0.6345 5.0182 40 1 1.0188 1.2295 5.0177 41 1 0.4229 3.1977 6.1631 42 1 0.9116 4.7056 8.0025 43 1 3.1979 4.7702 8.9825 44 1 4.9449 3.3127 8.0584 45 1 0.4718 3.2513 -1.7275 46 1 1.4322 3.8797 -0.3464 47 1 2.1853 5.3029 -2.1413 48 1 2.1040 3.9763 -3.3393 49 1 3.4114 7.1899 -3.5834 50 1 4.1678 2.5930 -0.3678 51 1 4.3009 1.8345 -1.9774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714045697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:07 Heat of formation + Delta-G solvation = -0.894386 kcal Electronic energy + Delta-G solvation = -31091.345155 eV Core-core repulsion = 26992.459592 eV Total energy + Delta-G solvation = -4098.885563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.53896 -40.07720 -37.09484 -36.93709 -35.64312 -35.46662 -33.01991 -32.14756 -30.28131 -30.09965 -29.02771 -28.01302 -26.62093 -24.57101 -24.12948 -23.65154 -23.00116 -21.91123 -20.60687 -20.05488 -18.55633 -17.72167 -17.52681 -16.90120 -16.74149 -16.50678 -15.98372 -15.72071 -15.51121 -14.94023 -14.56091 -14.43344 -14.17092 -14.10993 -13.83616 -13.61103 -13.20270 -13.07680 -12.83458 -12.60457 -12.44276 -12.16332 -12.15436 -12.03923 -11.89340 -11.76905 -11.59843 -11.39499 -11.24419 -10.95736 -10.87761 -10.75978 -10.68630 -10.41896 -10.33679 -10.09778 -10.00945 -9.72581 -9.45089 -9.03347 -8.52346 -8.26383 -8.20607 -6.66965 -5.51714 -2.91682 0.58981 1.65213 2.38103 2.93863 3.18304 3.45097 3.48783 3.53411 3.56432 4.25683 4.33505 4.44840 4.60625 4.62125 4.76435 4.79386 4.83294 4.95902 4.99056 5.03392 5.10736 5.17054 5.22754 5.30748 5.36334 5.50522 5.60406 5.60925 5.65347 5.67569 5.72860 5.82015 5.86207 5.87379 5.96153 6.02405 6.06467 6.11564 6.28530 6.36025 6.61621 6.67207 6.71044 6.84336 6.85430 7.27111 7.60437 7.73226 7.76567 7.85506 7.99052 8.49661 8.55363 9.35871 9.97077 10.62258 11.52396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.002821 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.818245 B = 9924.170848 C =11926.342828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.104 3.896 3 N -0.607 5.607 4 C 0.505 3.495 5 O -0.505 6.505 6 C -0.135 4.135 7 C -0.119 4.119 8 C 0.090 3.910 9 N -0.494 5.494 10 C 0.137 3.863 11 C -0.237 4.237 12 C -0.018 4.018 13 C -0.245 4.245 14 C 0.511 3.489 15 O -0.549 6.549 16 C 0.135 3.865 17 H 0.086 0.914 18 C -0.155 4.155 19 C 0.158 3.842 20 N -0.596 5.596 21 C -0.212 4.212 22 H 0.075 0.925 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.913 3.087 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.133 3.867 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.147 0.853 45 H 0.050 0.950 46 H 0.082 0.918 47 H 0.106 0.894 48 H 0.008 0.992 49 H 0.250 0.750 50 H 0.035 0.965 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.278 -13.195 20.024 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.019 4.019 3 N -0.341 5.341 4 C 0.292 3.708 5 O -0.379 6.379 6 C -0.176 4.176 7 C -0.158 4.158 8 C -0.031 4.031 9 N -0.204 5.204 10 C 0.009 3.991 11 C -0.260 4.260 12 C -0.039 4.039 13 C -0.267 4.267 14 C 0.313 3.687 15 O -0.432 6.432 16 C 0.032 3.968 17 H 0.104 0.896 18 C -0.194 4.194 19 C 0.033 3.967 20 N -0.321 5.321 21 C -0.341 4.341 22 H 0.093 0.907 23 C -0.209 4.209 24 N -0.574 5.574 25 Si 0.744 3.256 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.006 3.994 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.109 0.891 41 H 0.179 0.821 42 H 0.162 0.838 43 H 0.151 0.849 44 H 0.164 0.836 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.124 0.876 48 H 0.026 0.974 49 H 0.061 0.939 50 H 0.053 0.947 51 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -11.421 -12.882 19.600 26.087 hybrid contribution 0.595 0.463 -0.274 0.802 sum -10.827 -12.419 19.327 25.396 Atomic orbital electron populations 1.22227 0.96102 1.01841 1.02720 1.21548 0.94292 0.83020 1.03066 1.48035 1.66213 1.13670 1.06222 1.20424 0.78321 0.87130 0.84956 1.90832 1.42994 1.17227 1.86889 1.21615 1.03345 0.99830 0.92786 1.21655 1.04717 0.98454 0.90948 1.22073 1.02407 0.93724 0.84899 1.45569 1.10788 1.34296 1.29744 1.21986 0.93905 0.89638 0.93558 1.20656 0.98766 1.05091 1.01530 1.21443 0.92215 0.94092 0.96196 1.22152 1.01989 1.01918 1.00614 1.17191 0.81117 0.85346 0.85019 1.90977 1.45373 1.43903 1.62900 1.22174 0.97431 0.93835 0.83321 0.89601 1.23418 0.97354 0.95691 1.02924 1.21833 0.81738 1.00830 0.92322 1.44284 1.03359 1.14295 1.70204 1.19066 0.85769 0.97104 1.32161 0.90729 1.24750 0.96918 0.97692 1.01539 1.69797 1.19962 1.19696 1.47939 0.86076 0.81858 0.79754 0.77886 1.21782 1.21716 1.20765 1.21477 0.92737 0.88404 0.96787 0.92591 0.92019 0.91794 0.90370 0.90617 0.88890 0.89078 0.90535 0.89949 0.88077 0.89084 0.82130 0.83815 0.84889 0.83551 0.93134 0.89983 0.87632 0.97364 0.93937 0.94669 0.96757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.10 0.99 5.91 -4.04 -0.02 0.97 16 3 N -0.61 -8.82 2.54 -164.03 -0.42 -9.24 16 4 C 0.50 7.93 6.78 -10.99 -0.07 7.86 16 5 O -0.51 -10.73 12.33 5.56 0.07 -10.66 16 6 C -0.14 -1.39 4.25 -27.89 -0.12 -1.50 16 7 C -0.12 -1.35 4.83 -26.73 -0.13 -1.48 16 8 C 0.09 0.77 5.33 -4.04 -0.02 0.74 16 9 N -0.49 -4.87 2.58 -119.77 -0.31 -5.18 16 10 C 0.14 0.94 10.28 -16.84 -0.17 0.76 16 11 C -0.24 -1.52 10.01 -39.88 -0.40 -1.92 16 12 C -0.02 -0.13 10.10 -39.51 -0.40 -0.53 16 13 C -0.24 -2.57 9.99 -39.38 -0.39 -2.96 16 14 C 0.51 6.69 7.41 -15.44 -0.11 6.57 16 15 O -0.55 -9.35 16.64 4.86 0.08 -9.27 16 16 C 0.14 2.49 3.44 -66.10 -0.23 2.26 16 17 H 0.09 1.41 7.88 -51.93 -0.41 1.00 16 18 C -0.15 -3.21 6.39 -24.59 -0.16 -3.37 16 19 C 0.16 4.12 5.89 -2.53 -0.01 4.10 16 20 N -0.60 -16.55 3.39 -170.07 -0.58 -17.13 16 21 C -0.21 -6.39 10.27 -15.06 -0.15 -6.55 16 22 H 0.07 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 24 N -0.92 -28.40 10.09 55.49 0.56 -27.84 16 25 Si 0.91 23.44 29.55 -169.99 -5.02 18.42 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 29 C 0.13 3.08 6.49 -3.07 -0.02 3.06 16 30 H 0.06 0.43 7.22 -51.93 -0.37 0.06 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.70 7.96 -51.93 -0.41 0.29 16 34 H 0.08 0.56 6.44 -51.93 -0.33 0.23 16 35 H 0.09 0.82 7.40 -51.93 -0.38 0.43 16 36 H 0.09 0.66 7.18 -51.93 -0.37 0.28 16 37 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.10 0.95 7.39 -51.93 -0.38 0.56 16 40 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 41 H 0.16 0.55 8.04 -52.49 -0.42 0.12 16 42 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.87 5.81 -51.93 -0.30 1.56 16 47 H 0.11 3.12 5.87 -51.93 -0.30 2.81 16 48 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.04 0.88 6.28 -51.93 -0.33 0.55 16 51 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -39.39 404.26 -9.87 -49.27 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.21 Total: -0.97 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -2.14 Total: 6.50 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.74 Total: -59.39 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.15 Total: -19.93 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -39.39 -9.87 -49.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.375 kcal (2) G-P(sol) polarization free energy of solvation -39.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds