Wall clock time and date at job start Wed Apr 1 2020 06:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46659 * 2 1 4 4 C 1.34779 * 119.99646 * 89.99987 * 3 2 1 5 5 O 1.21277 * 119.99607 * 179.97438 * 4 3 2 6 6 C 1.50692 * 120.00204 * 359.97438 * 4 3 2 7 7 C 1.52999 * 109.47254 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47366 * 179.97438 * 7 6 4 9 9 N 1.46507 * 109.47333 * 180.02562 * 8 7 6 10 10 C 1.35763 * 119.62574 * 90.00000 * 9 8 7 11 11 C 1.35346 * 120.69996 * 180.26176 * 10 9 8 12 12 C 1.40200 * 119.94844 * 359.49300 * 11 10 9 13 13 C 1.36400 * 119.26552 * 0.51643 * 12 11 10 14 14 C 1.34664 * 119.61962 * 270.02623 * 9 8 7 15 15 O 1.22060 * 119.98985 * 0.02562 * 14 9 8 16 16 C 1.46498 * 120.00036 * 269.99806 * 3 2 1 17 17 H 1.08996 * 110.63849 * 1.69147 * 16 3 2 18 18 C 1.55156 * 110.72051 * 125.02622 * 16 3 2 19 19 C 1.54904 * 101.58301 * 153.86462 * 18 16 3 20 20 N 1.47432 * 104.83231 * 322.99077 * 19 18 16 21 21 C 1.36938 * 125.64818 * 204.09245 * 20 19 18 22 22 H 1.07998 * 119.99668 * 180.02562 * 21 20 19 23 23 C 1.38814 * 120.00011 * 0.03882 * 21 20 19 24 24 N 1.31617 * 120.00014 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99910 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47169 * 90.00337 * 25 23 21 27 27 H 1.48501 * 109.47205 * 210.00465 * 25 23 21 28 28 H 1.48504 * 109.47056 * 330.00182 * 25 23 21 29 29 C 1.47017 * 108.70131 * 24.13159 * 20 19 18 30 30 H 1.08995 * 109.47245 * 299.99776 * 1 2 3 31 31 H 1.09001 * 109.46867 * 60.00276 * 1 2 3 32 32 H 1.09003 * 109.46948 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47245 * 240.00224 * 2 1 3 34 34 H 1.08993 * 109.47154 * 119.99564 * 2 1 3 35 35 H 1.09002 * 109.47344 * 59.99818 * 6 4 3 36 36 H 1.08999 * 109.47068 * 299.99660 * 6 4 3 37 37 H 1.09002 * 109.46787 * 59.99853 * 7 6 4 38 38 H 1.08997 * 109.47616 * 300.00152 * 7 6 4 39 39 H 1.09002 * 109.47139 * 60.00250 * 8 7 6 40 40 H 1.08999 * 109.47161 * 300.00160 * 8 7 6 41 41 H 1.08002 * 119.64669 * 359.97438 * 10 9 8 42 42 H 1.07997 * 120.02433 * 179.72990 * 11 10 9 43 43 H 1.08000 * 120.36550 * 180.25754 * 12 11 10 44 44 H 1.07991 * 120.34804 * 179.75472 * 13 12 11 45 45 H 1.08999 * 111.00446 * 271.94445 * 18 16 3 46 46 H 1.09006 * 111.00203 * 35.79064 * 18 16 3 47 47 H 1.09004 * 110.37003 * 204.15620 * 19 18 16 48 48 H 1.08998 * 110.46083 * 81.87327 * 19 18 16 49 49 H 0.96995 * 120.00187 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.88111 * 239.52154 * 29 20 19 51 51 H 1.08997 * 110.01724 * 118.42993 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2428 2.0166 1.1673 5 8 2.6474 3.1599 1.1673 6 6 1.9912 1.3064 2.4723 7 6 2.3232 2.2435 3.6352 8 6 2.0671 1.5226 4.9602 9 7 2.3845 2.4202 6.0738 10 6 1.4174 3.2254 6.5833 11 6 1.6880 4.0667 7.6085 12 6 2.9757 4.1045 8.1617 13 6 3.9460 3.2950 7.6482 14 6 3.6322 2.4373 6.5800 15 8 4.4912 1.7081 6.1106 16 6 2.2624 2.0719 -1.2687 17 1 2.0038 1.4306 -2.1112 18 6 1.4738 3.4068 -1.3277 19 6 2.3401 4.2368 -2.3076 20 7 3.7309 3.8646 -1.9899 21 6 4.8384 4.6312 -2.2369 22 1 5.8184 4.2672 -1.9657 23 6 4.7015 5.8761 -2.8356 24 7 3.5071 6.3199 -3.1654 25 14 6.2123 6.9219 -3.1718 26 1 6.7420 6.6066 -4.5227 27 1 5.8437 8.3590 -3.1077 28 1 7.2521 6.6317 -2.1521 29 6 3.7317 2.5339 -1.3650 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.6210 0.4187 2.5302 36 1 0.9431 1.0126 2.5298 37 1 1.6936 3.1314 3.5775 38 1 3.3713 2.5370 3.5776 39 1 2.6964 0.6345 5.0182 40 1 1.0188 1.2295 5.0177 41 1 0.4229 3.1977 6.1631 42 1 0.9116 4.7056 8.0025 43 1 3.1979 4.7702 8.9825 44 1 4.9449 3.3127 8.0584 45 1 0.4718 3.2513 -1.7275 46 1 1.4322 3.8797 -0.3464 47 1 2.1853 5.3029 -2.1413 48 1 2.1040 3.9763 -3.3393 49 1 3.4114 7.1899 -3.5834 50 1 4.1678 2.5930 -0.3678 51 1 4.3009 1.8345 -1.9774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714045697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:11:06 Heat of formation + Delta-G solvation = -27.450415 kcal Electronic energy + Delta-G solvation = -31092.496711 eV Core-core repulsion = 26992.459592 eV Total energy + Delta-G solvation = -4100.037119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.30202 -41.36094 -38.63229 -37.95809 -36.75459 -36.45913 -34.47867 -33.57122 -31.59013 -30.80680 -30.70969 -29.29321 -28.02578 -26.43108 -25.02026 -24.47378 -23.83741 -22.84209 -22.09757 -21.95532 -19.71956 -18.99503 -18.50412 -18.27001 -17.85174 -17.26898 -17.20635 -16.74767 -16.70061 -16.51199 -15.91372 -15.60221 -15.32923 -15.18938 -15.00477 -14.70369 -14.49826 -14.33048 -13.96827 -13.77990 -13.45570 -13.43941 -13.25550 -13.04924 -12.99875 -12.95122 -12.76328 -12.71317 -12.63316 -12.46379 -12.29692 -12.13147 -12.06307 -12.05144 -11.84699 -11.72978 -11.36528 -11.06971 -10.98471 -10.77095 -10.42710 -9.55899 -8.95028 -8.89076 -7.79899 -5.23633 -0.05850 0.93996 1.39737 1.43524 1.52111 1.67314 1.75869 2.06546 2.47276 2.70522 3.28054 3.51012 3.67174 3.73411 3.78322 3.91231 3.95519 3.98047 3.99956 4.14467 4.15534 4.25835 4.30058 4.33041 4.42519 4.46532 4.52928 4.57413 4.62593 4.63800 4.70873 4.73304 4.89802 4.97486 5.00101 5.03607 5.08666 5.10614 5.16591 5.18640 5.24845 5.38925 5.41359 5.49030 5.63188 5.69391 5.76874 5.81931 6.12256 6.28363 6.57070 7.00764 7.08272 7.37050 7.75800 8.39755 9.21735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009413 B = 0.002821 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.818245 B = 9924.170848 C =11926.342828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.494 3.506 5 O -0.573 6.573 6 C -0.120 4.120 7 C -0.111 4.111 8 C 0.094 3.906 9 N -0.495 5.495 10 C 0.134 3.866 11 C -0.238 4.238 12 C 0.005 3.995 13 C -0.291 4.291 14 C 0.489 3.511 15 O -0.614 6.614 16 C 0.154 3.846 17 H 0.115 0.885 18 C -0.137 4.137 19 C 0.161 3.839 20 N -0.619 5.619 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.068 4.068 24 N -0.947 5.947 25 Si 0.982 3.018 26 H -0.279 1.279 27 H -0.288 1.288 28 H -0.277 1.277 29 C 0.130 3.870 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.140 0.860 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.206 0.794 42 H 0.182 0.818 43 H 0.164 0.836 44 H 0.138 0.862 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.065 0.935 48 H -0.005 1.005 49 H 0.248 0.752 50 H 0.010 0.990 51 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.554 -14.904 21.385 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.026 4.026 3 N -0.336 5.336 4 C 0.284 3.716 5 O -0.452 6.452 6 C -0.160 4.160 7 C -0.150 4.150 8 C -0.026 4.026 9 N -0.203 5.203 10 C 0.007 3.993 11 C -0.260 4.260 12 C -0.017 4.017 13 C -0.313 4.313 14 C 0.295 3.705 15 O -0.502 6.502 16 C 0.049 3.951 17 H 0.133 0.867 18 C -0.176 4.176 19 C 0.035 3.965 20 N -0.344 5.344 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.260 4.260 24 N -0.597 5.597 25 Si 0.810 3.190 26 H -0.206 1.206 27 H -0.214 1.214 28 H -0.202 1.202 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.164 0.836 41 H 0.223 0.777 42 H 0.199 0.801 43 H 0.181 0.819 44 H 0.156 0.844 45 H 0.102 0.898 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.013 0.987 49 H 0.057 0.943 50 H 0.028 0.972 51 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -14.761 -14.648 20.981 29.541 hybrid contribution 1.537 1.051 -0.655 1.973 sum -13.224 -13.597 20.326 27.802 Atomic orbital electron populations 1.22186 0.94339 1.03522 1.02289 1.21970 0.95650 0.79883 1.05059 1.48123 1.65630 1.15451 1.04368 1.21451 0.76749 0.86576 0.86821 1.90815 1.45975 1.20486 1.87923 1.21630 1.06584 0.99153 0.88662 1.21516 1.00987 0.99036 0.93418 1.22174 1.05225 0.92465 0.82778 1.45629 1.10415 1.34641 1.29641 1.22832 0.94799 0.88350 0.93292 1.21208 0.98921 1.04903 1.00921 1.21873 0.91923 0.92238 0.95671 1.22132 1.03032 1.04221 1.01903 1.17639 0.81804 0.85431 0.85668 1.90916 1.47371 1.46758 1.65175 1.21850 0.93197 0.93582 0.86468 0.86719 1.23153 0.98200 0.95984 1.00273 1.21605 0.82343 0.99509 0.93001 1.44582 1.03451 1.16006 1.70411 1.19383 0.86613 0.98208 1.32716 0.91261 1.25642 1.00103 0.98751 1.01490 1.70062 1.21762 1.19743 1.48159 0.85030 0.78311 0.77666 0.78023 1.20573 1.21445 1.20250 1.21618 0.96458 0.86718 0.94873 0.91946 0.93592 0.89004 0.89482 0.87706 0.86830 0.84255 0.91282 0.95579 0.89251 0.83596 0.77696 0.80121 0.81855 0.84380 0.89839 0.92068 0.91713 0.98686 0.94260 0.97166 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 71.98 0.74 -1.10 16 2 C 0.10 1.42 5.91 86.38 0.51 1.93 16 3 N -0.60 -16.36 2.54 -791.27 -2.01 -18.37 16 4 C 0.49 15.22 6.78 87.65 0.59 15.81 16 5 O -0.57 -25.48 12.33 -3.02 -0.04 -25.52 16 6 C -0.12 -2.17 4.25 29.85 0.13 -2.04 16 7 C -0.11 -2.47 4.83 30.59 0.15 -2.32 16 8 C 0.09 1.42 5.33 86.38 0.46 1.88 16 9 N -0.49 -9.32 2.58 -650.96 -1.68 -11.00 16 10 C 0.13 1.39 10.28 83.42 0.86 2.25 16 11 C -0.24 -2.22 10.01 22.08 0.22 -1.99 16 12 C 0.00 0.06 10.10 22.32 0.23 0.29 16 13 C -0.29 -6.47 9.99 22.40 0.22 -6.25 16 14 C 0.49 13.64 7.41 84.82 0.63 14.27 16 15 O -0.61 -23.06 16.64 -5.51 -0.09 -23.16 16 16 C 0.15 5.52 3.44 46.18 0.16 5.68 16 17 H 0.11 3.49 7.88 -2.39 -0.02 3.47 16 18 C -0.14 -5.72 6.39 31.98 0.20 -5.51 16 19 C 0.16 8.72 5.89 86.85 0.51 9.23 16 20 N -0.62 -35.92 3.39 -691.98 -2.35 -38.27 16 21 C -0.24 -15.09 10.27 84.03 0.86 -14.22 16 22 H 0.07 4.28 7.83 -2.91 -0.02 4.25 16 23 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 24 N -0.95 -60.44 10.09 21.65 0.22 -60.23 16 25 Si 0.98 49.60 29.55 68.60 2.03 51.63 16 26 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 27 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 28 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 29 C 0.13 6.19 6.49 86.73 0.56 6.76 16 30 H 0.06 0.63 7.22 -2.39 -0.02 0.61 16 31 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.20 7.96 -2.39 -0.02 1.18 16 34 H 0.10 1.01 6.44 -2.39 -0.02 0.99 16 35 H 0.11 1.64 7.40 -2.39 -0.02 1.63 16 36 H 0.14 1.22 7.18 -2.39 -0.02 1.20 16 37 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.03 0.86 8.10 -2.39 -0.02 0.84 16 39 H 0.09 1.61 7.39 -2.39 -0.02 1.60 16 40 H 0.15 0.61 8.01 -2.39 -0.02 0.59 16 41 H 0.21 0.23 8.04 -2.91 -0.02 0.21 16 42 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.14 3.07 8.06 -2.92 -0.02 3.04 16 45 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 46 H 0.06 2.85 5.81 -2.38 -0.01 2.84 16 47 H 0.06 4.04 5.87 -2.39 -0.01 4.03 16 48 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 49 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 50 H 0.01 0.54 6.28 -2.39 -0.01 0.53 16 51 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -98.76 404.26 4.49 -94.27 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.91 Total: 9.70 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: 7.50 Total: 20.94 kcal Atomic # 7 Polarization: -122.04 SS G_CDS: -5.82 Total: -127.86 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -0.13 Total: -48.67 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -98.76 4.49 -94.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714045697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.818 kcal (2) G-P(sol) polarization free energy of solvation -98.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds