Wall clock time and date at job start Wed Apr 1 2020 05:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47086 * 2 1 4 4 C 1.46906 * 110.99985 * 72.08095 * 3 2 1 5 5 C 1.46896 * 110.99872 * 196.03483 * 3 2 1 6 6 H 1.08993 * 109.47514 * 294.68354 * 5 3 2 7 7 C 1.50697 * 109.46793 * 174.68508 * 5 3 2 8 8 O 1.21279 * 120.00519 * 340.00396 * 7 5 3 9 9 N 1.34781 * 120.00092 * 160.00539 * 7 5 3 10 10 C 1.46496 * 120.00166 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.42902 * 113.28337 * 313.06444 * 11 10 9 13 13 C 1.53506 * 114.20701 * 179.97438 * 11 10 9 14 14 N 1.47072 * 87.98576 * 220.34730 * 13 11 10 15 15 C 1.36930 * 136.05486 * 207.08656 * 14 13 11 16 16 H 1.08003 * 120.00521 * 5.38662 * 15 14 13 17 17 C 1.38811 * 119.99982 * 185.38510 * 15 14 13 18 18 N 1.31618 * 119.99891 * 5.61556 * 17 15 14 19 19 Si 1.86807 * 120.00107 * 185.33767 * 17 15 14 20 20 H 1.48499 * 109.46996 * 85.00106 * 19 17 15 21 21 H 1.48500 * 109.46846 * 205.00274 * 19 17 15 22 22 H 1.48501 * 109.47127 * 325.00029 * 19 17 15 23 23 C 1.47069 * 87.88631 * 27.33845 * 14 13 11 24 24 C 1.50698 * 109.47081 * 54.68911 * 5 3 2 25 25 C 1.38241 * 120.00004 * 45.77526 * 24 5 3 26 26 C 1.38236 * 119.99513 * 179.78862 * 25 24 5 27 27 C 1.38233 * 120.00454 * 0.44473 * 26 25 24 28 28 C 1.38234 * 119.99807 * 359.81389 * 27 26 25 29 29 C 1.38237 * 120.00191 * 359.96936 * 28 27 26 30 30 H 1.08995 * 109.47342 * 64.66480 * 1 2 3 31 31 H 1.08997 * 109.46951 * 184.66317 * 1 2 3 32 32 H 1.08999 * 109.47066 * 304.65844 * 1 2 3 33 33 H 1.08992 * 109.47243 * 239.99774 * 2 1 3 34 34 H 1.08999 * 109.46642 * 119.99747 * 2 1 3 35 35 H 1.08997 * 109.46832 * 179.97438 * 4 3 2 36 36 H 1.09001 * 109.47089 * 300.00042 * 4 3 2 37 37 H 1.08998 * 109.46751 * 60.00310 * 4 3 2 38 38 H 0.97001 * 119.99692 * 359.97438 * 9 7 5 39 39 H 1.09000 * 109.47509 * 59.99938 * 10 9 7 40 40 H 1.08994 * 109.47333 * 299.99443 * 10 9 7 41 41 H 0.96694 * 114.00069 * 46.93357 * 12 11 10 42 42 H 1.08997 * 113.46292 * 105.56292 * 13 11 10 43 43 H 1.09000 * 113.51773 * 335.13503 * 13 11 10 44 44 H 0.96998 * 119.99974 * 179.71596 * 18 17 15 45 45 H 1.09000 * 113.46217 * 87.43509 * 23 14 13 46 46 H 1.08994 * 113.47034 * 217.87886 * 23 14 13 47 47 H 1.08000 * 120.00057 * 0.02562 * 25 24 5 48 48 H 1.08004 * 119.99238 * 180.27568 * 26 25 24 49 49 H 1.08000 * 119.99961 * 179.83439 * 27 26 25 50 50 H 1.08006 * 119.99851 * 180.02562 * 28 27 26 51 51 H 1.07991 * 120.00034 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7973 2.0220 1.3050 5 6 3.4378 1.4419 -0.3788 6 1 4.0376 0.9431 0.3824 7 6 3.8693 2.8812 -0.4948 8 8 3.0396 3.7528 -0.6453 9 7 5.1774 3.1998 -0.4312 10 6 5.5968 4.5989 -0.5434 11 6 7.1208 4.6843 -0.4395 12 8 7.6566 3.9230 0.6446 13 6 7.6800 6.1100 -0.5447 14 7 8.7710 5.5658 -1.3673 15 6 10.0686 5.9101 -1.6367 16 1 10.5277 6.7366 -1.1146 17 6 10.7942 5.1966 -2.5808 18 7 10.2042 4.2623 -3.2958 19 14 12.6063 5.5680 -2.8421 20 1 13.4146 4.8079 -1.8551 21 1 13.0001 5.1686 -4.2171 22 1 12.8445 7.0226 -2.6618 23 6 7.8529 4.4929 -1.7780 24 6 3.6319 0.7510 -1.7039 25 6 2.7653 1.0067 -2.7502 26 6 2.9461 0.3762 -3.9671 27 6 3.9878 -0.5169 -4.1349 28 6 4.8511 -0.7766 -3.0870 29 6 4.6731 -0.1427 -1.8715 30 1 -0.3634 0.4397 -0.9288 31 1 -0.3633 -1.0242 0.0835 32 1 -0.3633 0.5844 0.8453 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1694 3.0461 1.2774 36 1 0.7306 2.0284 1.5291 37 1 2.3275 1.4639 2.0767 38 1 5.8410 2.5027 -0.3105 39 1 5.1450 5.1793 0.2611 40 1 5.2749 4.9988 -1.5049 41 1 7.3025 3.0254 0.7078 42 1 8.0165 6.5157 0.4094 43 1 7.0274 6.7943 -1.0869 44 1 10.7102 3.7666 -3.9584 45 1 7.2452 4.7501 -2.6456 46 1 8.3366 3.5209 -1.8748 47 1 1.9495 1.7019 -2.6181 48 1 2.2717 0.5793 -4.7858 49 1 4.1273 -1.0115 -5.0848 50 1 5.6653 -1.4740 -3.2182 51 1 5.3479 -0.3453 -1.0530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716945593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:34 Heat of formation + Delta-G solvation = 23.482494 kcal Electronic energy + Delta-G solvation = -31525.600847 eV Core-core repulsion = 27427.772344 eV Total energy + Delta-G solvation = -4097.828503 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.67426 -39.31460 -38.52576 -37.17294 -35.01500 -33.98219 -32.57052 -32.01428 -30.98724 -30.67535 -28.84850 -27.33068 -26.19572 -24.96267 -24.70677 -22.74734 -22.26712 -21.96584 -21.09655 -20.16175 -19.39593 -17.78297 -17.16382 -16.75531 -16.55714 -15.89798 -15.64992 -15.48450 -15.11134 -14.84436 -14.74949 -14.62162 -14.16640 -13.95243 -13.61168 -13.57093 -13.46987 -13.26081 -13.10767 -12.80212 -12.74624 -12.45319 -12.32274 -12.23595 -12.04213 -11.89674 -11.63571 -11.27104 -11.15070 -11.13728 -10.98327 -10.87353 -10.73440 -10.46147 -10.06410 -9.81093 -9.50754 -9.16772 -9.00899 -8.87989 -8.82648 -8.79089 -8.56596 -6.91551 -5.79417 -3.10018 1.13986 1.32214 2.63903 2.95261 3.39575 3.43743 3.45483 3.56026 3.88292 4.41293 4.43024 4.48442 4.66926 4.70845 4.79326 4.91127 4.93689 4.99276 5.03685 5.08728 5.19622 5.25192 5.28658 5.30945 5.32265 5.40658 5.51611 5.57949 5.59121 5.71396 5.75749 5.80207 5.82802 5.96482 6.00035 6.03123 6.29735 6.32942 6.39573 6.40308 6.43274 6.51546 6.54106 6.70643 6.80643 6.88180 7.00607 7.09085 7.46556 7.47195 7.93361 8.07207 8.24840 9.01526 9.68184 10.59808 11.39235 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002833 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.901778 B = 9880.526978 C =11273.762908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.019 3.981 5 C 0.111 3.889 6 H 0.067 0.933 7 C 0.524 3.476 8 O -0.517 6.517 9 N -0.723 5.723 10 C 0.110 3.890 11 C 0.056 3.944 12 O -0.521 6.521 13 C 0.134 3.866 14 N -0.599 5.599 15 C -0.215 4.215 16 H 0.082 0.918 17 C -0.008 4.008 18 N -0.921 5.921 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.145 3.855 24 C -0.087 4.087 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.109 4.109 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.396 0.604 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.359 0.641 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.254 0.746 45 H 0.037 0.963 46 H 0.066 0.934 47 H 0.132 0.868 48 H 0.122 0.878 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.714 -13.052 5.402 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.239 5.239 4 C -0.129 4.129 5 C -0.001 4.001 6 H 0.085 0.915 7 C 0.308 3.692 8 O -0.392 6.392 9 N -0.376 5.376 10 C -0.014 4.014 11 C 0.013 3.987 12 O -0.325 6.325 13 C 0.007 3.993 14 N -0.324 5.324 15 C -0.342 4.342 16 H 0.100 0.900 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.745 3.255 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.018 3.982 24 C -0.087 4.087 25 C -0.101 4.101 26 C -0.142 4.142 27 C -0.131 4.131 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.205 0.795 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.150 0.850 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -18.895 -11.570 4.881 22.688 hybrid contribution 1.521 -1.110 0.190 1.893 sum -17.374 -12.680 5.071 22.099 Atomic orbital electron populations 1.21743 0.94554 1.01224 1.02694 1.22185 0.96394 0.88195 1.01221 1.61713 1.14434 1.17513 1.30276 1.22528 1.02236 1.00332 0.87773 1.20442 0.90972 0.93299 0.95377 0.91514 1.20131 0.82332 0.90084 0.76652 1.90698 1.51428 1.49610 1.47454 1.45921 1.07360 1.09804 1.74553 1.21919 0.95117 0.81581 1.02830 1.23488 0.88062 0.96534 0.90606 1.86642 1.68586 1.27585 1.49668 1.22379 0.90107 0.91111 0.95733 1.45349 1.06593 1.27841 1.52644 1.18897 0.84183 1.13497 1.17595 0.89999 1.24804 0.98566 0.99212 0.97849 1.69832 1.35018 1.26159 1.25736 0.86105 0.84586 0.77795 0.77060 1.21437 1.21651 1.20660 1.22679 0.89370 0.95347 0.90785 1.19309 0.97025 0.98207 0.94195 1.21099 0.98680 0.98396 0.91879 1.21196 0.98399 0.97249 0.97370 1.21219 0.95085 0.97997 0.98844 1.21099 0.99364 1.00181 0.93048 1.21029 0.97193 0.96491 0.98088 0.91850 0.92438 0.92611 0.90144 0.94858 0.90204 0.90780 0.95864 0.76984 0.91052 0.90173 0.79532 0.93060 0.93333 0.93654 0.94565 0.91542 0.84985 0.85997 0.86089 0.85807 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 10.04 37.16 0.37 -0.72 16 2 C 0.05 0.41 5.37 -3.82 -0.02 0.39 16 3 N -0.51 -5.42 3.80 -237.70 -0.90 -6.33 16 4 C 0.02 0.19 9.04 60.07 0.54 0.73 16 5 C 0.11 1.20 2.08 -70.02 -0.15 1.06 16 6 H 0.07 0.61 7.94 -51.93 -0.41 0.20 16 7 C 0.52 7.09 6.12 -10.98 -0.07 7.02 16 8 O -0.52 -8.69 15.14 5.56 0.08 -8.60 16 9 N -0.72 -9.37 5.34 -60.30 -0.32 -9.69 16 10 C 0.11 1.68 5.42 -4.04 -0.02 1.66 16 11 C 0.06 1.02 1.74 -89.96 -0.16 0.87 16 12 O -0.52 -9.37 13.56 -35.23 -0.48 -9.85 16 13 C 0.13 2.79 8.10 -8.49 -0.07 2.72 16 14 N -0.60 -15.63 3.77 -184.53 -0.70 -16.33 16 15 C -0.21 -6.13 10.74 -15.06 -0.16 -6.29 16 16 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -27.43 11.75 55.49 0.65 -26.78 16 19 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.14 3.34 6.69 -8.36 -0.06 3.28 16 24 C -0.09 -0.95 3.30 -104.62 -0.34 -1.29 16 25 C -0.08 -0.94 8.51 -39.58 -0.34 -1.28 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.68 16 27 C -0.11 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 29 C -0.11 -1.09 9.67 -39.58 -0.38 -1.48 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.41 6.61 -51.93 -0.34 0.07 16 33 H 0.08 0.74 5.97 -51.93 -0.31 0.43 16 34 H 0.03 0.27 8.03 -51.93 -0.42 -0.15 16 35 H 0.08 0.96 6.13 -51.93 -0.32 0.64 16 36 H 0.07 0.66 6.62 -51.93 -0.34 0.31 16 37 H 0.02 0.20 8.11 -51.93 -0.42 -0.22 16 38 H 0.40 4.37 6.95 -40.82 -0.28 4.08 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.31 7.89 -51.93 -0.41 0.90 16 41 H 0.36 4.73 7.20 45.56 0.33 5.06 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 44 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.04 0.87 7.93 -51.93 -0.41 0.45 16 46 H 0.07 1.69 7.50 -51.93 -0.39 1.30 16 47 H 0.13 1.64 7.90 -52.49 -0.41 1.22 16 48 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 49 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 50 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 51 H 0.12 0.98 7.99 -52.49 -0.42 0.56 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -34.65 410.45 -10.13 -44.78 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.49 Total: 7.69 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -2.14 Total: 1.58 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -1.27 Total: -59.12 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.39 Total: -18.45 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.65 -10.13 -44.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716945593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.266 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds