Wall clock time and date at job start Wed Apr 1 2020 05:27:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46899 * 109.47086 * 2 1
4 4 C 1.46906 * 110.99985 * 72.08095 * 3 2 1
5 5 C 1.46896 * 110.99872 * 196.03483 * 3 2 1
6 6 H 1.08993 * 109.47514 * 294.68354 * 5 3 2
7 7 C 1.50697 * 109.46793 * 174.68508 * 5 3 2
8 8 O 1.21279 * 120.00519 * 340.00396 * 7 5 3
9 9 N 1.34781 * 120.00092 * 160.00539 * 7 5 3
10 10 C 1.46496 * 120.00166 * 180.02562 * 9 7 5
11 11 C 1.52999 * 109.46910 * 179.97438 * 10 9 7
12 12 O 1.42902 * 113.28337 * 313.06444 * 11 10 9
13 13 C 1.53506 * 114.20701 * 179.97438 * 11 10 9
14 14 N 1.47072 * 87.98576 * 220.34730 * 13 11 10
15 15 C 1.36930 * 136.05486 * 207.08656 * 14 13 11
16 16 H 1.08003 * 120.00521 * 5.38662 * 15 14 13
17 17 C 1.38811 * 119.99982 * 185.38510 * 15 14 13
18 18 N 1.31618 * 119.99891 * 5.61556 * 17 15 14
19 19 Si 1.86807 * 120.00107 * 185.33767 * 17 15 14
20 20 H 1.48499 * 109.46996 * 85.00106 * 19 17 15
21 21 H 1.48500 * 109.46846 * 205.00274 * 19 17 15
22 22 H 1.48501 * 109.47127 * 325.00029 * 19 17 15
23 23 C 1.47069 * 87.88631 * 27.33845 * 14 13 11
24 24 C 1.50698 * 109.47081 * 54.68911 * 5 3 2
25 25 C 1.38241 * 120.00004 * 45.77526 * 24 5 3
26 26 C 1.38236 * 119.99513 * 179.78862 * 25 24 5
27 27 C 1.38233 * 120.00454 * 0.44473 * 26 25 24
28 28 C 1.38234 * 119.99807 * 359.81389 * 27 26 25
29 29 C 1.38237 * 120.00191 * 359.96936 * 28 27 26
30 30 H 1.08995 * 109.47342 * 64.66480 * 1 2 3
31 31 H 1.08997 * 109.46951 * 184.66317 * 1 2 3
32 32 H 1.08999 * 109.47066 * 304.65844 * 1 2 3
33 33 H 1.08992 * 109.47243 * 239.99774 * 2 1 3
34 34 H 1.08999 * 109.46642 * 119.99747 * 2 1 3
35 35 H 1.08997 * 109.46832 * 179.97438 * 4 3 2
36 36 H 1.09001 * 109.47089 * 300.00042 * 4 3 2
37 37 H 1.08998 * 109.46751 * 60.00310 * 4 3 2
38 38 H 0.97001 * 119.99692 * 359.97438 * 9 7 5
39 39 H 1.09000 * 109.47509 * 59.99938 * 10 9 7
40 40 H 1.08994 * 109.47333 * 299.99443 * 10 9 7
41 41 H 0.96694 * 114.00069 * 46.93357 * 12 11 10
42 42 H 1.08997 * 113.46292 * 105.56292 * 13 11 10
43 43 H 1.09000 * 113.51773 * 335.13503 * 13 11 10
44 44 H 0.96998 * 119.99974 * 179.71596 * 18 17 15
45 45 H 1.09000 * 113.46217 * 87.43509 * 23 14 13
46 46 H 1.08994 * 113.47034 * 217.87886 * 23 14 13
47 47 H 1.08000 * 120.00057 * 0.02562 * 25 24 5
48 48 H 1.08004 * 119.99238 * 180.27568 * 26 25 24
49 49 H 1.08000 * 119.99961 * 179.83439 * 27 26 25
50 50 H 1.08006 * 119.99851 * 180.02562 * 28 27 26
51 51 H 1.07991 * 120.00034 * 180.02562 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.7973 2.0220 1.3050
5 6 3.4378 1.4419 -0.3788
6 1 4.0376 0.9431 0.3824
7 6 3.8693 2.8812 -0.4948
8 8 3.0396 3.7528 -0.6453
9 7 5.1774 3.1998 -0.4312
10 6 5.5968 4.5989 -0.5434
11 6 7.1208 4.6843 -0.4395
12 8 7.6566 3.9230 0.6446
13 6 7.6800 6.1100 -0.5447
14 7 8.7710 5.5658 -1.3673
15 6 10.0686 5.9101 -1.6367
16 1 10.5277 6.7366 -1.1146
17 6 10.7942 5.1966 -2.5808
18 7 10.2042 4.2623 -3.2958
19 14 12.6063 5.5680 -2.8421
20 1 13.4146 4.8079 -1.8551
21 1 13.0001 5.1686 -4.2171
22 1 12.8445 7.0226 -2.6618
23 6 7.8529 4.4929 -1.7780
24 6 3.6319 0.7510 -1.7039
25 6 2.7653 1.0067 -2.7502
26 6 2.9461 0.3762 -3.9671
27 6 3.9878 -0.5169 -4.1349
28 6 4.8511 -0.7766 -3.0870
29 6 4.6731 -0.1427 -1.8715
30 1 -0.3634 0.4397 -0.9288
31 1 -0.3633 -1.0242 0.0835
32 1 -0.3633 0.5844 0.8453
33 1 1.8934 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.1694 3.0461 1.2774
36 1 0.7306 2.0284 1.5291
37 1 2.3275 1.4639 2.0767
38 1 5.8410 2.5027 -0.3105
39 1 5.1450 5.1793 0.2611
40 1 5.2749 4.9988 -1.5049
41 1 7.3025 3.0254 0.7078
42 1 8.0165 6.5157 0.4094
43 1 7.0274 6.7943 -1.0869
44 1 10.7102 3.7666 -3.9584
45 1 7.2452 4.7501 -2.6456
46 1 8.3366 3.5209 -1.8748
47 1 1.9495 1.7019 -2.6181
48 1 2.2717 0.5793 -4.7858
49 1 4.1273 -1.0115 -5.0848
50 1 5.6653 -1.4740 -3.2182
51 1 5.3479 -0.3453 -1.0530
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001716945593.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:32
Heat of formation + Delta-G solvation = -1.886069 kcal
Electronic energy + Delta-G solvation = -31526.700911 eV
Core-core repulsion = 27427.772344 eV
Total energy + Delta-G solvation = -4098.928566 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.67918 -40.71440 -39.60829 -38.02278 -36.59501 -35.25064 -34.10451 -33.32863
-31.76125 -31.38411 -30.42218 -28.51051 -27.50016 -26.57825 -25.86566 -23.84978
-23.52446 -22.89123 -22.03994 -21.23595 -20.91980 -19.07249 -18.53666 -17.95976
-17.65701 -17.17993 -16.78455 -16.58675 -16.42093 -16.06516 -15.72145 -15.57062
-15.53475 -15.44311 -15.06193 -14.72039 -14.45346 -14.26461 -14.20493 -13.97800
-13.90548 -13.67957 -13.50465 -13.22241 -13.05851 -12.96305 -12.80611 -12.69567
-12.55875 -12.45332 -12.25236 -12.01984 -11.89976 -11.80445 -11.67559 -11.39623
-11.00050 -10.92168 -10.70011 -10.14702 -9.79590 -9.61989 -9.31480 -8.96964
-7.94471 -5.26358 0.34543 0.52991 1.44528 1.47522 1.55066 1.58482
1.91917 2.45243 2.77146 3.00387 3.05402 3.28684 3.32619 3.53366
3.61333 3.80257 3.88159 3.92205 4.10352 4.18099 4.23230 4.32723
4.34907 4.37190 4.54225 4.58792 4.63649 4.66682 4.68528 4.72862
4.74472 4.76519 4.91687 4.96150 5.01537 5.04770 5.12957 5.13138
5.18945 5.23868 5.29838 5.38382 5.44304 5.56162 5.61704 5.65368
5.87274 5.92170 6.08383 6.11768 6.43894 6.79166 6.87802 7.18034
7.55983 8.55216 9.23926
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013703 B = 0.002833 C = 0.002483
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2042.901778 B = 9880.526978 C =11273.762908
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.051 3.949
3 N -0.530 5.530
4 C 0.022 3.978
5 C 0.118 3.882
6 H 0.090 0.910
7 C 0.525 3.475
8 O -0.552 6.552
9 N -0.716 5.716
10 C 0.126 3.874
11 C 0.096 3.904
12 O -0.534 6.534
13 C 0.127 3.873
14 N -0.634 5.634
15 C -0.231 4.231
16 H 0.084 0.916
17 C -0.066 4.066
18 N -0.951 5.951
19 Si 0.981 3.019
20 H -0.284 1.284
21 H -0.293 1.293
22 H -0.269 1.269
23 C 0.144 3.856
24 C -0.093 4.093
25 C -0.097 4.097
26 C -0.133 4.133
27 C -0.120 4.120
28 C -0.127 4.127
29 C -0.114 4.114
30 H 0.051 0.949
31 H 0.072 0.928
32 H 0.057 0.943
33 H 0.074 0.926
34 H 0.045 0.955
35 H 0.056 0.944
36 H 0.082 0.918
37 H 0.038 0.962
38 H 0.407 0.593
39 H 0.083 0.917
40 H 0.069 0.931
41 H 0.381 0.619
42 H 0.056 0.944
43 H 0.068 0.932
44 H 0.249 0.751
45 H 0.024 0.976
46 H 0.037 0.963
47 H 0.116 0.884
48 H 0.134 0.866
49 H 0.139 0.861
50 H 0.141 0.859
51 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.743 -14.180 6.518 24.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.076 4.076
3 N -0.255 5.255
4 C -0.125 4.125
5 C 0.006 3.994
6 H 0.108 0.892
7 C 0.311 3.689
8 O -0.429 6.429
9 N -0.370 5.370
10 C 0.000 4.000
11 C 0.053 3.947
12 O -0.340 6.340
13 C 0.001 3.999
14 N -0.359 5.359
15 C -0.359 4.359
16 H 0.102 0.898
17 C -0.259 4.259
18 N -0.600 5.600
19 Si 0.809 3.191
20 H -0.210 1.210
21 H -0.219 1.219
22 H -0.194 1.194
23 C 0.018 3.982
24 C -0.094 4.094
25 C -0.116 4.116
26 C -0.151 4.151
27 C -0.138 4.138
28 C -0.145 4.145
29 C -0.132 4.132
30 H 0.070 0.930
31 H 0.091 0.909
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.063 0.937
35 H 0.075 0.925
36 H 0.100 0.900
37 H 0.056 0.944
38 H 0.243 0.757
39 H 0.101 0.899
40 H 0.088 0.912
41 H 0.231 0.769
42 H 0.074 0.926
43 H 0.085 0.915
44 H 0.058 0.942
45 H 0.042 0.958
46 H 0.055 0.945
47 H 0.134 0.866
48 H 0.152 0.848
49 H 0.157 0.843
50 H 0.159 0.841
51 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -18.946 -12.718 6.032 23.602
hybrid contribution 1.475 -0.767 -0.150 1.669
sum -17.471 -13.485 5.882 22.840
Atomic orbital electron populations
1.21722 0.93888 1.02135 1.02126 1.22188 0.96887 0.87114 1.01417
1.61685 1.14338 1.18784 1.30734 1.22472 1.02905 0.99159 0.87996
1.20391 0.91675 0.91207 0.96097 0.89223 1.20633 0.81791 0.91058
0.75459 1.90683 1.52316 1.50925 1.48989 1.45811 1.07755 1.09120
1.74344 1.21590 0.92458 0.83168 1.02746 1.22853 0.89333 0.94672
0.87874 1.86593 1.69294 1.29311 1.48825 1.22606 0.89067 0.92946
0.95286 1.45716 1.07080 1.29567 1.53549 1.19285 0.85847 1.13343
1.17381 0.89843 1.25656 1.02823 0.99423 0.97964 1.70008 1.36361
1.27248 1.26355 0.85058 0.79373 0.78098 0.76555 1.21037 1.21896
1.19425 1.22653 0.89253 0.93250 0.93074 1.19354 0.97375 0.98686
0.93998 1.21076 0.98834 0.98832 0.92849 1.21399 0.98983 0.97326
0.97407 1.21507 0.94722 0.97747 0.99799 1.21422 0.99748 1.00340
0.93004 1.21297 0.97032 0.95973 0.98887 0.93015 0.90886 0.92448
0.90709 0.93709 0.92500 0.89953 0.94386 0.75684 0.89864 0.91239
0.76940 0.92587 0.91494 0.94198 0.95839 0.94453 0.86629 0.84826
0.84274 0.84100 0.83900
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.95 10.04 71.98 0.72 -1.23 16
2 C 0.05 0.80 5.37 86.30 0.46 1.27 16
3 N -0.53 -10.60 3.80 -905.95 -3.44 -14.04 16
4 C 0.02 0.42 9.04 127.69 1.15 1.57 16
5 C 0.12 2.39 2.08 43.42 0.09 2.48 16
6 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16
7 C 0.52 13.72 6.12 87.66 0.54 14.26 16
8 O -0.55 -18.47 15.14 -3.03 -0.05 -18.52 16
9 N -0.72 -17.55 5.34 -463.08 -2.47 -20.02 16
10 C 0.13 3.67 5.42 86.38 0.47 4.14 16
11 C 0.10 3.40 1.74 -10.37 -0.02 3.39 16
12 O -0.53 -18.25 13.56 -148.98 -2.02 -20.27 16
13 C 0.13 5.20 8.10 83.19 0.67 5.87 16
14 N -0.63 -33.26 3.77 -738.21 -2.78 -36.04 16
15 C -0.23 -13.27 10.74 84.03 0.90 -12.37 16
16 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16
17 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16
18 N -0.95 -57.70 11.75 21.65 0.25 -57.45 16
19 Si 0.98 46.20 29.56 68.60 2.03 48.22 16
20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16
21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16
22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16
23 C 0.14 6.74 6.69 83.28 0.56 7.29 16
24 C -0.09 -1.94 3.30 -19.86 -0.07 -2.00 16
25 C -0.10 -2.23 8.51 22.27 0.19 -2.04 16
26 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16
27 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16
28 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16
29 C -0.11 -2.06 9.67 22.27 0.22 -1.84 16
30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16
32 H 0.06 0.77 6.61 -2.39 -0.02 0.75 16
33 H 0.07 1.28 5.97 -2.39 -0.01 1.26 16
34 H 0.04 0.61 8.03 -2.39 -0.02 0.59 16
35 H 0.06 1.34 6.13 -2.39 -0.01 1.32 16
36 H 0.08 1.36 6.62 -2.39 -0.02 1.35 16
37 H 0.04 0.58 8.11 -2.39 -0.02 0.56 16
38 H 0.41 8.17 6.95 -92.71 -0.64 7.53 16
39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16
40 H 0.07 2.24 7.89 -2.39 -0.02 2.22 16
41 H 0.38 9.15 7.20 -74.06 -0.53 8.61 16
42 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16
43 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16
44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16
45 H 0.02 1.16 7.93 -2.39 -0.02 1.14 16
46 H 0.04 1.94 7.50 -2.39 -0.02 1.92 16
47 H 0.12 2.98 7.90 -2.91 -0.02 2.95 16
48 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16
49 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16
50 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16
51 H 0.14 1.90 7.99 -2.92 -0.02 1.88 16
Total: -1.00 -75.57 410.45 -1.70 -77.27
By element:
Atomic # 1 Polarization: 30.16 SS G_CDS: -0.24 Total: 29.92 kcal
Atomic # 6 Polarization: 3.90 SS G_CDS: 7.03 Total: 10.92 kcal
Atomic # 7 Polarization: -119.11 SS G_CDS: -8.45 Total: -127.56 kcal
Atomic # 8 Polarization: -36.72 SS G_CDS: -2.07 Total: -38.78 kcal
Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal
Total: -75.57 -1.70 -77.27 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001716945593.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.384 kcal
(2) G-P(sol) polarization free energy of solvation -75.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.191 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds