Wall clock time and date at job start Wed Apr 1 2020 05:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47086 * 2 1 4 4 C 1.46906 * 110.99985 * 72.08095 * 3 2 1 5 5 C 1.46896 * 110.99872 * 196.03483 * 3 2 1 6 6 H 1.08993 * 109.47514 * 294.68354 * 5 3 2 7 7 C 1.50697 * 109.46793 * 174.68508 * 5 3 2 8 8 O 1.21279 * 120.00519 * 340.00396 * 7 5 3 9 9 N 1.34781 * 120.00092 * 160.00539 * 7 5 3 10 10 C 1.46496 * 120.00166 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46910 * 179.97438 * 10 9 7 12 12 O 1.42902 * 113.28337 * 313.06444 * 11 10 9 13 13 C 1.53506 * 114.20701 * 179.97438 * 11 10 9 14 14 N 1.47072 * 87.98576 * 220.34730 * 13 11 10 15 15 C 1.36930 * 136.05486 * 207.08656 * 14 13 11 16 16 H 1.08003 * 120.00521 * 5.38662 * 15 14 13 17 17 C 1.38811 * 119.99982 * 185.38510 * 15 14 13 18 18 N 1.31618 * 119.99891 * 5.61556 * 17 15 14 19 19 Si 1.86807 * 120.00107 * 185.33767 * 17 15 14 20 20 H 1.48499 * 109.46996 * 85.00106 * 19 17 15 21 21 H 1.48500 * 109.46846 * 205.00274 * 19 17 15 22 22 H 1.48501 * 109.47127 * 325.00029 * 19 17 15 23 23 C 1.47069 * 87.88631 * 27.33845 * 14 13 11 24 24 C 1.50698 * 109.47081 * 54.68911 * 5 3 2 25 25 C 1.38241 * 120.00004 * 45.77526 * 24 5 3 26 26 C 1.38236 * 119.99513 * 179.78862 * 25 24 5 27 27 C 1.38233 * 120.00454 * 0.44473 * 26 25 24 28 28 C 1.38234 * 119.99807 * 359.81389 * 27 26 25 29 29 C 1.38237 * 120.00191 * 359.96936 * 28 27 26 30 30 H 1.08995 * 109.47342 * 64.66480 * 1 2 3 31 31 H 1.08997 * 109.46951 * 184.66317 * 1 2 3 32 32 H 1.08999 * 109.47066 * 304.65844 * 1 2 3 33 33 H 1.08992 * 109.47243 * 239.99774 * 2 1 3 34 34 H 1.08999 * 109.46642 * 119.99747 * 2 1 3 35 35 H 1.08997 * 109.46832 * 179.97438 * 4 3 2 36 36 H 1.09001 * 109.47089 * 300.00042 * 4 3 2 37 37 H 1.08998 * 109.46751 * 60.00310 * 4 3 2 38 38 H 0.97001 * 119.99692 * 359.97438 * 9 7 5 39 39 H 1.09000 * 109.47509 * 59.99938 * 10 9 7 40 40 H 1.08994 * 109.47333 * 299.99443 * 10 9 7 41 41 H 0.96694 * 114.00069 * 46.93357 * 12 11 10 42 42 H 1.08997 * 113.46292 * 105.56292 * 13 11 10 43 43 H 1.09000 * 113.51773 * 335.13503 * 13 11 10 44 44 H 0.96998 * 119.99974 * 179.71596 * 18 17 15 45 45 H 1.09000 * 113.46217 * 87.43509 * 23 14 13 46 46 H 1.08994 * 113.47034 * 217.87886 * 23 14 13 47 47 H 1.08000 * 120.00057 * 0.02562 * 25 24 5 48 48 H 1.08004 * 119.99238 * 180.27568 * 26 25 24 49 49 H 1.08000 * 119.99961 * 179.83439 * 27 26 25 50 50 H 1.08006 * 119.99851 * 180.02562 * 28 27 26 51 51 H 1.07991 * 120.00034 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7973 2.0220 1.3050 5 6 3.4378 1.4419 -0.3788 6 1 4.0376 0.9431 0.3824 7 6 3.8693 2.8812 -0.4948 8 8 3.0396 3.7528 -0.6453 9 7 5.1774 3.1998 -0.4312 10 6 5.5968 4.5989 -0.5434 11 6 7.1208 4.6843 -0.4395 12 8 7.6566 3.9230 0.6446 13 6 7.6800 6.1100 -0.5447 14 7 8.7710 5.5658 -1.3673 15 6 10.0686 5.9101 -1.6367 16 1 10.5277 6.7366 -1.1146 17 6 10.7942 5.1966 -2.5808 18 7 10.2042 4.2623 -3.2958 19 14 12.6063 5.5680 -2.8421 20 1 13.4146 4.8079 -1.8551 21 1 13.0001 5.1686 -4.2171 22 1 12.8445 7.0226 -2.6618 23 6 7.8529 4.4929 -1.7780 24 6 3.6319 0.7510 -1.7039 25 6 2.7653 1.0067 -2.7502 26 6 2.9461 0.3762 -3.9671 27 6 3.9878 -0.5169 -4.1349 28 6 4.8511 -0.7766 -3.0870 29 6 4.6731 -0.1427 -1.8715 30 1 -0.3634 0.4397 -0.9288 31 1 -0.3633 -1.0242 0.0835 32 1 -0.3633 0.5844 0.8453 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.1694 3.0461 1.2774 36 1 0.7306 2.0284 1.5291 37 1 2.3275 1.4639 2.0767 38 1 5.8410 2.5027 -0.3105 39 1 5.1450 5.1793 0.2611 40 1 5.2749 4.9988 -1.5049 41 1 7.3025 3.0254 0.7078 42 1 8.0165 6.5157 0.4094 43 1 7.0274 6.7943 -1.0869 44 1 10.7102 3.7666 -3.9584 45 1 7.2452 4.7501 -2.6456 46 1 8.3366 3.5209 -1.8748 47 1 1.9495 1.7019 -2.6181 48 1 2.2717 0.5793 -4.7858 49 1 4.1273 -1.0115 -5.0848 50 1 5.6653 -1.4740 -3.2182 51 1 5.3479 -0.3453 -1.0530 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716945593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:32 Heat of formation + Delta-G solvation = -1.886069 kcal Electronic energy + Delta-G solvation = -31526.700911 eV Core-core repulsion = 27427.772344 eV Total energy + Delta-G solvation = -4098.928566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67918 -40.71440 -39.60829 -38.02278 -36.59501 -35.25064 -34.10451 -33.32863 -31.76125 -31.38411 -30.42218 -28.51051 -27.50016 -26.57825 -25.86566 -23.84978 -23.52446 -22.89123 -22.03994 -21.23595 -20.91980 -19.07249 -18.53666 -17.95976 -17.65701 -17.17993 -16.78455 -16.58675 -16.42093 -16.06516 -15.72145 -15.57062 -15.53475 -15.44311 -15.06193 -14.72039 -14.45346 -14.26461 -14.20493 -13.97800 -13.90548 -13.67957 -13.50465 -13.22241 -13.05851 -12.96305 -12.80611 -12.69567 -12.55875 -12.45332 -12.25236 -12.01984 -11.89976 -11.80445 -11.67559 -11.39623 -11.00050 -10.92168 -10.70011 -10.14702 -9.79590 -9.61989 -9.31480 -8.96964 -7.94471 -5.26358 0.34543 0.52991 1.44528 1.47522 1.55066 1.58482 1.91917 2.45243 2.77146 3.00387 3.05402 3.28684 3.32619 3.53366 3.61333 3.80257 3.88159 3.92205 4.10352 4.18099 4.23230 4.32723 4.34907 4.37190 4.54225 4.58792 4.63649 4.66682 4.68528 4.72862 4.74472 4.76519 4.91687 4.96150 5.01537 5.04770 5.12957 5.13138 5.18945 5.23868 5.29838 5.38382 5.44304 5.56162 5.61704 5.65368 5.87274 5.92170 6.08383 6.11768 6.43894 6.79166 6.87802 7.18034 7.55983 8.55216 9.23926 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002833 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.901778 B = 9880.526978 C =11273.762908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.022 3.978 5 C 0.118 3.882 6 H 0.090 0.910 7 C 0.525 3.475 8 O -0.552 6.552 9 N -0.716 5.716 10 C 0.126 3.874 11 C 0.096 3.904 12 O -0.534 6.534 13 C 0.127 3.873 14 N -0.634 5.634 15 C -0.231 4.231 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.981 3.019 20 H -0.284 1.284 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.144 3.856 24 C -0.093 4.093 25 C -0.097 4.097 26 C -0.133 4.133 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.114 4.114 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.407 0.593 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.381 0.619 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.249 0.751 45 H 0.024 0.976 46 H 0.037 0.963 47 H 0.116 0.884 48 H 0.134 0.866 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.743 -14.180 6.518 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.255 5.255 4 C -0.125 4.125 5 C 0.006 3.994 6 H 0.108 0.892 7 C 0.311 3.689 8 O -0.429 6.429 9 N -0.370 5.370 10 C 0.000 4.000 11 C 0.053 3.947 12 O -0.340 6.340 13 C 0.001 3.999 14 N -0.359 5.359 15 C -0.359 4.359 16 H 0.102 0.898 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.809 3.191 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.194 1.194 23 C 0.018 3.982 24 C -0.094 4.094 25 C -0.116 4.116 26 C -0.151 4.151 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.132 4.132 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.243 0.757 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.231 0.769 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.055 0.945 47 H 0.134 0.866 48 H 0.152 0.848 49 H 0.157 0.843 50 H 0.159 0.841 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.946 -12.718 6.032 23.602 hybrid contribution 1.475 -0.767 -0.150 1.669 sum -17.471 -13.485 5.882 22.840 Atomic orbital electron populations 1.21722 0.93888 1.02135 1.02126 1.22188 0.96887 0.87114 1.01417 1.61685 1.14338 1.18784 1.30734 1.22472 1.02905 0.99159 0.87996 1.20391 0.91675 0.91207 0.96097 0.89223 1.20633 0.81791 0.91058 0.75459 1.90683 1.52316 1.50925 1.48989 1.45811 1.07755 1.09120 1.74344 1.21590 0.92458 0.83168 1.02746 1.22853 0.89333 0.94672 0.87874 1.86593 1.69294 1.29311 1.48825 1.22606 0.89067 0.92946 0.95286 1.45716 1.07080 1.29567 1.53549 1.19285 0.85847 1.13343 1.17381 0.89843 1.25656 1.02823 0.99423 0.97964 1.70008 1.36361 1.27248 1.26355 0.85058 0.79373 0.78098 0.76555 1.21037 1.21896 1.19425 1.22653 0.89253 0.93250 0.93074 1.19354 0.97375 0.98686 0.93998 1.21076 0.98834 0.98832 0.92849 1.21399 0.98983 0.97326 0.97407 1.21507 0.94722 0.97747 0.99799 1.21422 0.99748 1.00340 0.93004 1.21297 0.97032 0.95973 0.98887 0.93015 0.90886 0.92448 0.90709 0.93709 0.92500 0.89953 0.94386 0.75684 0.89864 0.91239 0.76940 0.92587 0.91494 0.94198 0.95839 0.94453 0.86629 0.84826 0.84274 0.84100 0.83900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.04 71.98 0.72 -1.23 16 2 C 0.05 0.80 5.37 86.30 0.46 1.27 16 3 N -0.53 -10.60 3.80 -905.95 -3.44 -14.04 16 4 C 0.02 0.42 9.04 127.69 1.15 1.57 16 5 C 0.12 2.39 2.08 43.42 0.09 2.48 16 6 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16 7 C 0.52 13.72 6.12 87.66 0.54 14.26 16 8 O -0.55 -18.47 15.14 -3.03 -0.05 -18.52 16 9 N -0.72 -17.55 5.34 -463.08 -2.47 -20.02 16 10 C 0.13 3.67 5.42 86.38 0.47 4.14 16 11 C 0.10 3.40 1.74 -10.37 -0.02 3.39 16 12 O -0.53 -18.25 13.56 -148.98 -2.02 -20.27 16 13 C 0.13 5.20 8.10 83.19 0.67 5.87 16 14 N -0.63 -33.26 3.77 -738.21 -2.78 -36.04 16 15 C -0.23 -13.27 10.74 84.03 0.90 -12.37 16 16 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -3.78 5.50 84.86 0.47 -3.32 16 18 N -0.95 -57.70 11.75 21.65 0.25 -57.45 16 19 Si 0.98 46.20 29.56 68.60 2.03 48.22 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C 0.14 6.74 6.69 83.28 0.56 7.29 16 24 C -0.09 -1.94 3.30 -19.86 -0.07 -2.00 16 25 C -0.10 -2.23 8.51 22.27 0.19 -2.04 16 26 C -0.13 -2.70 10.05 22.27 0.22 -2.47 16 27 C -0.12 -2.21 10.05 22.27 0.22 -1.99 16 28 C -0.13 -2.30 10.05 22.27 0.22 -2.07 16 29 C -0.11 -2.06 9.67 22.27 0.22 -1.84 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.77 6.61 -2.39 -0.02 0.75 16 33 H 0.07 1.28 5.97 -2.39 -0.01 1.26 16 34 H 0.04 0.61 8.03 -2.39 -0.02 0.59 16 35 H 0.06 1.34 6.13 -2.39 -0.01 1.32 16 36 H 0.08 1.36 6.62 -2.39 -0.02 1.35 16 37 H 0.04 0.58 8.11 -2.39 -0.02 0.56 16 38 H 0.41 8.17 6.95 -92.71 -0.64 7.53 16 39 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.07 2.24 7.89 -2.39 -0.02 2.22 16 41 H 0.38 9.15 7.20 -74.06 -0.53 8.61 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 43 H 0.07 2.52 8.10 -2.39 -0.02 2.50 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 45 H 0.02 1.16 7.93 -2.39 -0.02 1.14 16 46 H 0.04 1.94 7.50 -2.39 -0.02 1.92 16 47 H 0.12 2.98 7.90 -2.91 -0.02 2.95 16 48 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 49 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 50 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 51 H 0.14 1.90 7.99 -2.92 -0.02 1.88 16 Total: -1.00 -75.57 410.45 -1.70 -77.27 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -0.24 Total: 29.92 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 7.03 Total: 10.92 kcal Atomic # 7 Polarization: -119.11 SS G_CDS: -8.45 Total: -127.56 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -2.07 Total: -38.78 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.57 -1.70 -77.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716945593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.384 kcal (2) G-P(sol) polarization free energy of solvation -75.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds