Wall clock time and date at job start Wed Apr 1 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47547 * 2 1 4 4 C 1.36943 * 119.99849 * 275.36779 * 3 2 1 5 5 H 1.07999 * 119.99314 * 38.14222 * 4 3 2 6 6 C 1.38806 * 119.99918 * 218.13731 * 4 3 2 7 7 N 1.31622 * 120.00138 * 20.60141 * 6 4 3 8 8 Si 1.86801 * 120.00127 * 200.59669 * 6 4 3 9 9 H 1.48506 * 109.46872 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47198 * 120.00215 * 8 6 4 11 11 H 1.48499 * 109.47243 * 240.00708 * 8 6 4 12 12 C 1.46496 * 120.00233 * 95.36613 * 3 2 1 13 13 C 1.52998 * 109.47284 * 270.00294 * 12 3 2 14 14 C 1.53003 * 109.47161 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.47166 * 180.02562 * 14 13 12 16 16 C 1.34768 * 120.00079 * 179.97438 * 15 14 13 17 17 O 1.21556 * 120.00063 * 0.02562 * 16 15 14 18 18 C 1.47857 * 120.00293 * 179.97438 * 16 15 14 19 19 C 1.39622 * 120.11015 * 0.02562 * 18 16 15 20 20 C 1.37977 * 119.99852 * 180.25630 * 19 18 16 21 21 C 1.38262 * 120.21840 * 359.46286 * 20 19 18 22 22 C 1.50699 * 119.88612 * 180.23922 * 21 20 19 23 23 C 1.38945 * 120.22332 * 0.51146 * 21 20 19 24 24 N 1.39952 * 119.99751 * 179.74311 * 23 21 20 25 25 C 1.34781 * 119.99939 * 150.64388 * 24 23 21 26 26 C 1.50697 * 120.00018 * 184.75234 * 25 24 23 27 27 O 1.21288 * 119.99816 * 4.75855 * 25 24 23 28 28 C 1.38633 * 120.00370 * 359.77168 * 23 21 20 29 29 H 1.08994 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46789 * 300.00083 * 1 2 3 31 31 H 1.09003 * 109.46512 * 59.99785 * 1 2 3 32 32 H 1.09006 * 109.46812 * 239.99364 * 2 1 3 33 33 H 1.09007 * 109.46962 * 120.00051 * 2 1 3 34 34 H 0.96996 * 119.99994 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47371 * 149.99723 * 12 3 2 36 36 H 1.08999 * 109.46805 * 30.00331 * 12 3 2 37 37 H 1.08999 * 109.46910 * 60.00039 * 13 12 3 38 38 H 1.08999 * 109.47230 * 299.99777 * 13 12 3 39 39 H 1.08993 * 109.47138 * 59.99866 * 14 13 12 40 40 H 1.08999 * 109.47010 * 300.00087 * 14 13 12 41 41 H 0.97005 * 119.99670 * 0.02562 * 15 14 13 42 42 H 1.08004 * 119.99719 * 359.97438 * 19 18 16 43 43 H 1.07996 * 119.88686 * 179.72311 * 20 19 18 44 44 H 1.09000 * 109.47217 * 270.27865 * 22 21 20 45 45 H 1.09011 * 109.46986 * 30.27468 * 22 21 20 46 46 H 1.08995 * 109.47120 * 150.27500 * 22 21 20 47 47 H 0.96998 * 120.00248 * 330.64569 * 24 23 21 48 48 H 1.08998 * 109.46948 * 60.00055 * 26 25 24 49 49 H 1.08997 * 109.47292 * 179.97438 * 26 25 24 50 50 H 1.08996 * 109.47366 * 300.00464 * 26 25 24 51 51 H 1.08000 * 120.11368 * 179.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1421 2.0637 -1.1808 5 1 1.4038 1.9353 -1.9584 6 6 3.2163 2.9204 -1.3780 7 7 4.3048 2.7897 -0.6495 8 14 3.1173 4.2588 -2.6773 9 1 1.7968 4.1951 -3.3538 10 1 3.2796 5.5869 -2.0333 11 1 4.1965 4.0585 -3.6776 12 6 2.3746 2.0322 1.2631 13 6 1.1445 2.7376 1.8378 14 6 1.5163 3.4171 3.1573 15 7 0.3384 4.0920 3.7079 16 6 0.4290 4.7617 4.8739 17 8 1.4883 4.8060 5.4686 18 6 -0.7596 5.4434 5.4294 19 6 -1.9774 5.3944 4.7481 20 6 -3.0838 6.0358 5.2658 21 6 -2.9946 6.7190 6.4646 22 6 -4.2092 7.4124 7.0259 23 6 -1.7875 6.7732 7.1505 24 7 -1.7012 7.4706 8.3608 25 6 -0.8156 7.0833 9.3001 26 6 -0.7956 7.7653 10.6438 27 8 -0.0346 6.1858 9.0639 28 6 -0.6685 6.1370 6.6358 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5140 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.0555 3.3881 -0.7876 35 1 3.1629 2.7636 1.0853 36 1 2.7275 1.2826 1.9713 37 1 0.3563 2.0062 2.0157 38 1 0.7916 3.4873 1.1296 39 1 2.3048 4.1484 2.9799 40 1 1.8690 2.6672 3.8654 41 1 -0.5070 4.0563 3.2335 42 1 -2.0520 4.8583 3.8135 43 1 -4.0237 6.0005 4.7351 44 1 -4.2500 8.4347 6.6501 45 1 -5.1076 6.8764 6.7194 46 1 -4.1485 7.4274 8.1140 47 1 -2.2787 8.2327 8.5237 48 1 -1.7642 7.6419 11.1282 49 1 -0.0193 7.3199 11.2658 50 1 -0.5894 8.8271 10.5093 51 1 0.2708 6.1783 7.1674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752183478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:07 Heat of formation + Delta-G solvation = -34.304529 kcal Electronic energy + Delta-G solvation = -29843.607299 eV Core-core repulsion = 25743.272963 eV Total energy + Delta-G solvation = -4100.334336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.07485 -39.67503 -38.38114 -36.39428 -35.20079 -34.72532 -32.99366 -31.83181 -31.48190 -30.98880 -29.10283 -28.62379 -27.50213 -25.19286 -23.77649 -23.25499 -22.45842 -21.03071 -20.86354 -20.44726 -19.96866 -18.27805 -17.41529 -16.71218 -16.53172 -16.12834 -15.61873 -15.37497 -15.33251 -14.85262 -14.71683 -14.40905 -14.23901 -13.96514 -13.86560 -13.73767 -13.35897 -13.30378 -13.08200 -12.84175 -12.80135 -12.56159 -12.33761 -12.24550 -11.98767 -11.78472 -11.55581 -11.37089 -11.10565 -10.99713 -10.81105 -10.74750 -10.52757 -10.42204 -10.06151 -10.03079 -9.77255 -9.58531 -9.49230 -9.03631 -8.73679 -8.45026 -8.41090 -6.52365 -5.75095 -3.35702 0.62936 1.08990 2.16342 2.61543 2.89684 3.34840 3.38759 3.45373 3.47183 3.76583 4.26174 4.41269 4.48506 4.49951 4.73675 4.77119 4.83901 4.86265 4.98666 5.10763 5.13688 5.27274 5.30622 5.39477 5.43720 5.50038 5.70154 5.72158 5.86795 5.91568 6.02788 6.06908 6.11733 6.13704 6.22415 6.33686 6.39498 6.47706 6.52733 6.62523 6.70887 6.79707 6.84643 6.94388 6.95688 7.13327 7.21341 7.69502 7.72133 7.73434 7.85621 8.41033 8.56244 9.23157 9.85227 10.44511 11.24089 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014506 B = 0.002024 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.730205 B =13833.403872 C =14012.947984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.259 4.259 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.886 5.886 8 Si 0.895 3.105 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.120 3.880 15 N -0.720 5.720 16 C 0.551 3.449 17 O -0.534 6.534 18 C -0.115 4.115 19 C -0.099 4.099 20 C -0.108 4.108 21 C -0.096 4.096 22 C -0.116 4.116 23 C 0.132 3.868 24 N -0.672 5.672 25 C 0.504 3.496 26 C -0.172 4.172 27 O -0.513 6.513 28 C -0.069 4.069 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.254 0.746 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.411 0.589 48 H 0.091 0.909 49 H 0.098 0.902 50 H 0.091 0.909 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.290 11.650 19.821 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.389 4.389 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.003 4.003 15 N -0.371 5.371 16 C 0.338 3.662 17 O -0.412 6.412 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.173 4.173 23 C 0.038 3.962 24 N -0.317 5.317 25 C 0.292 3.708 26 C -0.231 4.231 27 O -0.387 6.387 28 C -0.089 4.089 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.232 0.768 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.247 0.753 48 H 0.109 0.891 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -17.730 11.090 20.132 29.028 hybrid contribution -0.869 1.138 -0.873 1.677 sum -18.598 12.227 19.259 29.433 Atomic orbital electron populations 1.22370 1.00210 0.98861 1.01083 1.20850 0.91647 0.87438 0.98709 1.43742 1.76058 1.08172 1.02507 1.19008 1.04110 1.21492 0.94279 0.92345 1.25217 0.94288 1.01304 0.98017 1.69996 1.03179 1.37574 1.42088 0.86366 0.77615 0.82250 0.81371 1.20130 1.21423 1.21640 1.20795 0.94412 0.96675 0.85749 1.22538 1.02397 0.99867 0.93864 1.21513 0.86982 0.96191 0.95613 1.46086 1.14578 1.53545 1.22892 1.18229 0.87946 0.78981 0.81095 1.90789 1.29596 1.61055 1.59766 1.19950 0.94048 1.01483 0.96394 1.21337 0.92067 0.98819 0.99600 1.20763 0.98894 0.97898 0.95129 1.19807 0.93387 1.00359 0.96338 1.20777 0.95317 1.00441 1.00763 1.17470 0.93304 0.98306 0.87136 1.43556 1.40364 1.32971 1.14856 1.21112 0.79813 0.83482 0.86367 1.21928 1.05437 1.02311 0.93464 1.90791 1.37895 1.29886 1.80129 1.21607 0.99163 0.94665 0.93502 0.94660 0.93807 0.93288 0.93915 0.94834 0.93554 0.88721 0.95639 0.93052 0.91710 0.91359 0.91841 0.76780 0.85270 0.84963 0.90778 0.90709 0.91718 0.75256 0.89066 0.88356 0.89009 0.82134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 10.21 37.16 0.38 -2.61 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.38 2.43 -173.24 -0.42 -14.80 16 4 C -0.26 -7.00 9.45 -15.06 -0.14 -7.14 16 5 H 0.06 1.59 7.91 -52.49 -0.42 1.17 16 6 C 0.01 0.33 4.97 -17.43 -0.09 0.25 16 7 N -0.89 -25.59 11.46 55.49 0.64 -24.95 16 8 Si 0.89 21.53 29.60 -169.99 -5.03 16.50 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.15 3.48 5.33 -4.05 -0.02 3.46 16 13 C -0.15 -2.77 5.65 -26.73 -0.15 -2.92 16 14 C 0.12 2.15 5.67 -4.04 -0.02 2.12 16 15 N -0.72 -11.15 5.51 -61.25 -0.34 -11.49 16 16 C 0.55 9.43 7.77 -12.33 -0.10 9.34 16 17 O -0.53 -11.30 16.34 5.32 0.09 -11.21 16 18 C -0.11 -1.62 5.87 -104.99 -0.62 -2.24 16 19 C -0.10 -1.06 9.54 -39.16 -0.37 -1.43 16 20 C -0.11 -0.94 9.67 -39.67 -0.38 -1.32 16 21 C -0.10 -0.81 5.90 -104.35 -0.62 -1.42 16 22 C -0.12 -0.54 9.44 36.00 0.34 -0.20 16 23 C 0.13 1.40 6.37 -83.74 -0.53 0.86 16 24 N -0.67 -5.03 4.87 -9.90 -0.05 -5.08 16 25 C 0.50 4.58 7.81 -10.98 -0.09 4.50 16 26 C -0.17 -0.71 10.32 36.00 0.37 -0.33 16 27 O -0.51 -7.49 14.18 5.55 0.08 -7.41 16 28 C -0.07 -0.98 8.30 -38.98 -0.32 -1.30 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.76 6.65 -51.93 -0.35 0.42 16 31 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.04 0.93 8.08 -51.93 -0.42 0.52 16 33 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.10 2.50 5.53 -51.93 -0.29 2.21 16 36 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 37 H 0.05 0.91 6.64 -51.93 -0.35 0.57 16 38 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.40 5.01 6.50 -40.82 -0.27 4.75 16 42 H 0.13 1.13 6.40 -52.48 -0.34 0.79 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.07 0.29 8.09 -51.92 -0.42 -0.13 16 46 H 0.06 0.23 7.05 -51.93 -0.37 -0.14 16 47 H 0.41 1.45 7.58 -40.82 -0.31 1.14 16 48 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 49 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 50 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 51 H 0.16 2.74 5.37 -52.49 -0.28 2.46 16 LS Contribution 415.56 15.07 6.26 6.26 Total: -1.00 -35.94 415.56 -9.13 -45.07 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.97 Total: 4.55 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -2.39 Total: 2.55 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.17 Total: -56.32 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.62 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -35.94 -9.13 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752183478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.763 kcal (2) G-P(sol) polarization free energy of solvation -35.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds