Wall clock time and date at job start Wed Apr 1 2020 05:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47133 * 2 1 4 4 C 1.36929 * 120.00596 * 275.31444 * 3 2 1 5 5 H 1.08005 * 120.00187 * 37.57298 * 4 3 2 6 6 C 1.38812 * 120.00286 * 217.58048 * 4 3 2 7 7 N 1.31623 * 119.99679 * 21.42074 * 6 4 3 8 8 Si 1.86797 * 120.00195 * 201.41760 * 6 4 3 9 9 H 1.48497 * 109.47048 * 60.00120 * 8 6 4 10 10 H 1.48502 * 109.47243 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47294 * 299.99935 * 8 6 4 12 12 C 1.46505 * 119.99544 * 95.30868 * 3 2 1 13 13 C 1.52996 * 109.47496 * 270.00167 * 12 3 2 14 14 C 1.52999 * 109.47454 * 180.02562 * 13 12 3 15 15 N 1.46493 * 109.47257 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00077 * 179.97438 * 15 14 13 17 17 O 1.21551 * 119.99869 * 0.02562 * 16 15 14 18 18 C 1.47847 * 120.00228 * 180.02562 * 16 15 14 19 19 C 1.39578 * 120.14817 * 180.02562 * 18 16 15 20 20 C 1.37950 * 119.85484 * 180.02562 * 19 18 16 21 21 C 1.38359 * 120.14715 * 0.02562 * 20 19 18 22 22 C 1.50698 * 119.85389 * 179.97438 * 21 20 19 23 23 N 1.46507 * 109.46944 * 90.00871 * 22 21 20 24 24 C 1.34772 * 119.99858 * 180.02562 * 23 22 21 25 25 C 1.50702 * 119.99755 * 180.02562 * 24 23 22 26 26 O 1.21283 * 120.00364 * 359.97438 * 24 23 22 27 27 C 1.38362 * 120.29228 * 0.24118 * 21 20 19 28 28 C 1.37961 * 120.14259 * 359.48386 * 27 21 20 29 29 H 1.09006 * 109.47144 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47427 * 299.99530 * 1 2 3 31 31 H 1.08998 * 109.47882 * 59.99716 * 1 2 3 32 32 H 1.09003 * 109.46962 * 240.00307 * 2 1 3 33 33 H 1.09004 * 109.47274 * 120.00615 * 2 1 3 34 34 H 0.97006 * 119.99784 * 180.02562 * 7 6 4 35 35 H 1.09007 * 109.46599 * 150.00094 * 12 3 2 36 36 H 1.09000 * 109.47404 * 30.00650 * 12 3 2 37 37 H 1.09001 * 109.47187 * 59.99871 * 13 12 3 38 38 H 1.09007 * 109.46800 * 300.00065 * 13 12 3 39 39 H 1.09001 * 109.47296 * 59.99611 * 14 13 12 40 40 H 1.08999 * 109.46744 * 299.99968 * 14 13 12 41 41 H 0.97004 * 120.00227 * 0.02562 * 15 14 13 42 42 H 1.08004 * 120.06934 * 0.02562 * 19 18 16 43 43 H 1.08001 * 119.92859 * 180.02562 * 20 19 18 44 44 H 1.09001 * 109.47185 * 210.00177 * 22 21 20 45 45 H 1.08996 * 109.47497 * 330.00819 * 22 21 20 46 46 H 0.97002 * 119.99507 * 359.97438 * 23 22 21 47 47 H 1.08998 * 109.46868 * 359.97438 * 25 24 23 48 48 H 1.08992 * 109.47590 * 119.99879 * 25 24 23 49 49 H 1.09007 * 109.46678 * 240.00029 * 25 24 23 50 50 H 1.07996 * 119.93098 * 179.73987 * 27 21 20 51 51 H 1.07992 * 120.07330 * 180.25572 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1807 5 1 1.4104 1.9279 -1.9626 6 6 3.2111 2.9290 -1.3727 7 7 4.3026 2.7980 -0.6489 8 14 3.0993 4.2795 -2.6583 9 1 1.9627 5.1786 -2.3342 10 1 4.3617 5.0615 -2.6659 11 1 2.8844 3.6726 -3.9965 12 6 2.3731 2.0326 1.2634 13 6 1.1425 2.7381 1.8367 14 6 1.5133 3.4189 3.1558 15 7 0.3351 4.0949 3.7044 16 6 0.4249 4.7659 4.8698 17 8 1.4835 4.8105 5.4654 18 6 -0.7643 5.4477 5.4238 19 6 -0.6746 6.1439 6.6303 20 6 -1.7881 6.7774 7.1419 21 6 -2.9920 6.7234 6.4623 22 6 -4.2044 7.4174 7.0276 23 7 -4.2604 8.7914 6.5223 24 6 -5.2661 9.6067 6.8970 25 6 -5.3240 11.0199 6.3768 26 8 -6.1249 9.2028 7.6521 27 6 -3.0891 6.0304 5.2687 28 6 -1.9818 5.3972 4.7431 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.0488 3.4031 -0.7828 35 1 3.1616 2.7640 1.0860 36 1 2.7255 1.2832 1.9722 37 1 0.3540 2.0067 2.0140 38 1 0.7903 3.4875 1.1279 39 1 2.3016 4.1504 2.9782 40 1 1.8658 2.6698 3.8647 41 1 -0.5098 4.0590 3.2293 42 1 0.2645 6.1865 7.1620 43 1 -1.7199 7.3168 8.0751 44 1 -5.1040 6.8819 6.7242 45 1 -4.1401 7.4327 8.1155 46 1 -3.5732 9.1146 5.9187 47 1 -4.4751 11.1992 5.7171 48 1 -6.2516 11.1657 5.8236 49 1 -5.2868 11.7170 7.2140 50 1 -4.0328 5.9884 4.7452 51 1 -2.0579 4.8600 3.8094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752195470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:47 Heat of formation + Delta-G solvation = -63.577801 kcal Electronic energy + Delta-G solvation = -29064.010872 eV Core-core repulsion = 24962.407152 eV Total energy + Delta-G solvation = -4101.603720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39196 -40.63445 -39.52106 -38.17122 -36.27599 -35.99564 -33.81512 -33.34695 -32.48742 -31.92091 -30.67266 -30.12200 -27.69704 -26.66692 -25.25308 -23.72954 -23.36371 -22.53786 -22.02240 -21.65849 -21.25017 -19.03546 -18.61504 -18.01390 -17.38704 -17.23255 -17.03056 -16.58658 -16.50928 -16.00549 -15.88838 -15.77956 -15.73631 -15.27742 -15.00833 -14.67478 -14.51726 -14.26039 -14.25499 -14.04449 -13.86888 -13.63586 -13.28172 -13.21857 -13.15273 -12.90784 -12.75134 -12.72476 -12.62676 -12.54398 -12.34966 -12.14744 -12.07878 -11.92885 -11.46983 -11.25068 -11.12644 -11.06746 -10.47946 -10.26788 -10.17599 -10.02473 -9.87893 -8.53445 -7.79799 -5.43944 -0.34224 0.33628 1.46807 1.49057 1.55475 1.63433 1.67852 2.08747 2.36790 2.52131 2.86516 3.25154 3.46137 3.65919 3.72924 3.75400 3.94160 3.99455 4.15349 4.19651 4.30615 4.33576 4.45536 4.49279 4.53927 4.59356 4.65595 4.69019 4.73825 4.77288 4.79120 4.89644 4.98817 4.99555 5.04807 5.09970 5.16958 5.20014 5.30401 5.34587 5.37037 5.37959 5.44602 5.46548 5.61497 5.70770 5.80274 5.85288 6.47502 6.49228 6.53992 7.11993 7.20152 7.22946 7.89977 8.42666 9.14754 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.001789 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.391487 B =15646.144537 C =16175.044260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.264 4.264 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.297 1.297 11 H -0.276 1.276 12 C 0.150 3.850 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.708 5.708 16 C 0.547 3.453 17 O -0.585 6.585 18 C -0.139 4.139 19 C -0.074 4.074 20 C -0.103 4.103 21 C -0.078 4.078 22 C 0.159 3.841 23 N -0.716 5.716 24 C 0.506 3.494 25 C -0.166 4.166 26 O -0.601 6.601 27 C -0.101 4.101 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.250 0.750 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.127 0.873 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.416 0.584 47 H 0.102 0.898 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.155 0.845 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.218 11.975 13.980 26.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.394 4.394 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.202 1.202 10 H -0.223 1.223 11 H -0.201 1.201 12 C 0.023 3.977 13 C -0.163 4.163 14 C 0.008 3.992 15 N -0.360 5.360 16 C 0.336 3.664 17 O -0.466 6.466 18 C -0.142 4.142 19 C -0.093 4.093 20 C -0.121 4.121 21 C -0.078 4.078 22 C 0.036 3.964 23 N -0.369 5.369 24 C 0.295 3.705 25 C -0.225 4.225 26 O -0.483 6.483 27 C -0.119 4.119 28 C -0.102 4.102 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.145 0.855 43 H 0.166 0.834 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.253 0.747 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.119 0.881 50 H 0.172 0.828 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.893 11.745 14.870 26.759 hybrid contribution 0.697 0.521 -1.176 1.463 sum -18.196 12.265 13.694 25.867 Atomic orbital electron populations 1.22165 0.97171 1.00768 1.00891 1.21005 0.93919 0.85727 0.98578 1.43969 1.76464 1.09513 1.02247 1.19145 1.04093 1.21277 0.94895 0.92665 1.25870 0.94016 1.03393 1.00183 1.70132 1.03758 1.38073 1.44232 0.85551 0.76547 0.79897 0.79728 1.20194 1.22289 1.20123 1.20697 0.95293 0.96115 0.85565 1.22172 1.00752 0.99574 0.93770 1.21183 0.87385 0.95588 0.95066 1.45914 1.14494 1.52722 1.22880 1.18838 0.88475 0.78379 0.80690 1.90751 1.31696 1.63070 1.61106 1.19960 0.93481 1.02686 0.98077 1.21322 0.99639 0.94451 0.93864 1.21204 0.91173 0.99012 1.00722 1.20074 0.94468 0.98024 0.95277 1.20178 0.95234 0.82040 0.98931 1.46173 1.28346 1.12400 1.49996 1.21534 0.80001 0.89280 0.79684 1.21882 1.06118 0.90527 1.03977 1.90720 1.40817 1.78121 1.38604 1.21278 0.99245 0.96275 0.95143 1.21536 0.91087 0.97866 0.99675 0.91729 0.92933 0.94432 0.95339 0.93772 0.94041 0.92234 0.95453 0.91021 0.92781 0.93577 0.92028 0.74911 0.85531 0.83351 0.90328 0.90640 0.74727 0.87944 0.88082 0.88106 0.82752 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.12 16 2 C 0.13 5.34 6.44 86.38 0.56 5.89 16 3 N -0.60 -28.57 2.43 -702.00 -1.71 -30.28 16 4 C -0.26 -13.92 9.45 84.03 0.79 -13.13 16 5 H 0.06 2.91 7.92 -2.91 -0.02 2.88 16 6 C -0.04 -2.02 4.95 84.86 0.42 -1.60 16 7 N -0.92 -53.03 11.47 21.65 0.25 -52.78 16 8 Si 0.95 43.53 29.60 68.60 2.03 45.56 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.15 6.70 5.33 86.38 0.46 7.16 16 13 C -0.12 -4.28 5.65 30.59 0.17 -4.11 16 14 C 0.13 4.32 5.67 86.38 0.49 4.81 16 15 N -0.71 -18.73 5.51 -465.99 -2.57 -21.30 16 16 C 0.55 15.79 7.77 86.79 0.67 16.46 16 17 O -0.58 -21.89 16.35 -3.88 -0.06 -21.96 16 18 C -0.14 -2.92 5.87 -20.09 -0.12 -3.04 16 19 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 20 C -0.10 -1.35 9.68 22.23 0.22 -1.13 16 21 C -0.08 -0.86 5.25 -19.81 -0.10 -0.97 16 22 C 0.16 1.73 5.79 85.63 0.50 2.22 16 23 N -0.72 -6.62 5.55 -466.78 -2.59 -9.21 16 24 C 0.51 6.76 7.94 87.66 0.70 7.45 16 25 C -0.17 -0.87 10.39 71.24 0.74 -0.13 16 26 O -0.60 -14.21 17.10 -3.04 -0.05 -14.26 16 27 C -0.10 -1.10 9.68 22.23 0.22 -0.89 16 28 C -0.08 -1.21 9.54 22.53 0.21 -0.99 16 29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.05 1.59 6.64 -2.39 -0.02 1.57 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.03 1.20 8.08 -2.39 -0.02 1.18 16 33 H 0.04 1.65 7.83 -2.39 -0.02 1.64 16 34 H 0.25 14.11 8.31 -92.70 -0.77 13.34 16 35 H 0.06 3.13 5.52 -2.38 -0.01 3.12 16 36 H 0.03 1.17 7.86 -2.39 -0.02 1.16 16 37 H 0.07 2.23 6.64 -2.39 -0.02 2.21 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.41 8.25 6.51 -92.71 -0.60 7.64 16 42 H 0.13 2.69 7.65 -2.91 -0.02 2.66 16 43 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 45 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 46 H 0.42 1.97 8.30 -92.71 -0.77 1.20 16 47 H 0.10 0.01 7.91 -2.39 -0.02 -0.01 16 48 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 51 H 0.15 1.59 6.41 -2.91 -0.02 1.57 16 Total: -1.00 -75.32 423.42 1.75 -73.58 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -0.43 Total: 17.94 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 6.88 Total: 12.71 kcal Atomic # 7 Polarization: -106.95 SS G_CDS: -6.62 Total: -113.57 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.12 Total: -36.22 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -75.32 1.75 -73.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752195470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.001 kcal (2) G-P(sol) polarization free energy of solvation -75.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds