Wall clock time and date at job start Wed Apr 1 2020 05:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47076 * 2 1 4 4 C 1.46899 * 110.99748 * 59.18113 * 3 2 1 5 5 C 1.53003 * 109.47035 * 66.05090 * 4 3 2 6 6 N 1.46497 * 109.46823 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99776 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00122 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47401 * 180.02562 * 9 7 6 11 11 C 1.38265 * 119.99731 * 270.21317 * 10 9 7 12 12 C 1.38215 * 119.99504 * 180.25013 * 11 10 9 13 13 C 1.38257 * 120.00209 * 359.51696 * 12 11 10 14 14 C 1.38207 * 119.99914 * 0.27104 * 13 12 11 15 15 C 1.50702 * 119.99833 * 179.97438 * 14 13 12 16 16 C 1.38211 * 120.00092 * 89.99960 * 10 9 7 17 17 C 1.46901 * 110.99579 * 295.23055 * 3 2 1 18 18 C 1.50696 * 109.47065 * 288.23527 * 17 3 2 19 19 O 1.21293 * 120.00494 * 354.30314 * 18 17 3 20 20 N 1.34781 * 120.00195 * 174.30452 * 18 17 3 21 21 C 1.37094 * 120.00357 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99650 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00043 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99888 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00342 * 25 23 21 27 27 H 1.48499 * 109.47193 * 210.00198 * 25 23 21 28 28 H 1.48502 * 109.47262 * 330.00604 * 25 23 21 29 29 H 1.09001 * 109.46938 * 299.98444 * 1 2 3 30 30 H 1.08994 * 109.47171 * 59.98795 * 1 2 3 31 31 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47431 * 239.99967 * 2 1 3 33 33 H 1.09007 * 109.47449 * 120.00065 * 2 1 3 34 34 H 1.08997 * 109.47449 * 306.04556 * 4 3 2 35 35 H 1.09007 * 109.46740 * 186.04726 * 4 3 2 36 36 H 1.09002 * 109.47133 * 59.99804 * 5 4 3 37 37 H 1.08998 * 109.47031 * 299.99603 * 5 4 3 38 38 H 0.96998 * 120.00612 * 0.02562 * 6 5 4 39 39 H 1.09003 * 109.47444 * 60.00043 * 9 7 6 40 40 H 1.09010 * 109.47428 * 300.00669 * 9 7 6 41 41 H 1.07992 * 120.00417 * 0.04312 * 11 10 9 42 42 H 1.08002 * 119.99827 * 179.78607 * 12 11 10 43 43 H 1.08005 * 120.00001 * 180.25669 * 13 12 11 44 44 H 1.08992 * 109.47591 * 89.99750 * 15 14 13 45 45 H 1.09007 * 109.46842 * 210.00157 * 15 14 13 46 46 H 1.09008 * 109.47024 * 329.99704 * 15 14 13 47 47 H 1.07998 * 120.00362 * 0.02562 * 16 10 9 48 48 H 1.08994 * 109.47436 * 48.23834 * 17 3 2 49 49 H 1.09001 * 109.46634 * 168.23733 * 17 3 2 50 50 H 0.97002 * 119.99820 * 359.97438 * 20 18 17 51 51 H 0.97000 * 119.99744 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5327 2.1155 1.1778 5 6 2.1475 1.5121 2.4423 6 7 1.6623 2.2410 3.6168 7 6 2.0728 1.8825 4.8494 8 8 2.8442 0.9567 4.9863 9 6 1.5733 2.6318 6.0577 10 6 2.1789 2.0377 7.3031 11 6 1.5354 1.0050 7.9598 12 6 2.0882 0.4636 9.1050 13 6 3.2897 0.9478 9.5883 14 6 3.9350 1.9772 8.9294 15 6 5.2443 2.5054 9.4566 16 6 3.3797 2.5221 7.7865 17 6 1.6439 2.0761 -1.2406 18 6 2.4640 1.5369 -2.3842 19 8 3.3516 0.7383 -2.1704 20 7 2.2112 1.9419 -3.6446 21 6 2.9575 1.4517 -4.6849 22 1 3.7478 0.7406 -4.4944 23 6 2.6965 1.8689 -5.9843 24 7 1.7346 2.7337 -6.2161 25 14 3.7130 1.2004 -7.4018 26 1 3.0729 -0.0298 -7.9329 27 1 3.7932 2.2207 -8.4778 28 1 5.0809 0.8788 -6.9216 29 1 -0.3633 0.5136 0.8901 30 1 -0.3633 0.5140 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.4467 2.0388 1.2295 35 1 1.8195 3.1642 1.0991 36 1 3.2336 1.5889 2.3905 37 1 1.8607 0.4635 2.5210 38 1 1.0450 2.9812 3.5074 39 1 0.4872 2.5554 6.1093 40 1 1.8603 3.6806 5.9792 41 1 0.5992 0.6237 7.5798 42 1 1.5839 -0.3408 9.6199 43 1 3.7237 0.5219 10.4809 44 1 6.0674 1.9475 9.0102 45 1 5.3397 3.5607 9.2008 46 1 5.2727 2.3902 10.5402 47 1 3.8839 3.3267 7.2719 48 1 0.5857 1.9106 -1.4426 49 1 1.8303 3.1446 -1.1320 50 1 1.5011 2.5802 -3.8157 51 1 1.5521 3.0246 -7.1232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753087728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:04 Heat of formation + Delta-G solvation = -48.353366 kcal Electronic energy + Delta-G solvation = -29158.879384 eV Core-core repulsion = 25057.935845 eV Total energy + Delta-G solvation = -4100.943539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32029 -39.25828 -38.75899 -37.10023 -34.78537 -33.82459 -33.78710 -32.31221 -31.23757 -30.47012 -29.72518 -28.00091 -27.09498 -26.01652 -24.28837 -23.62813 -22.43350 -21.44128 -20.62387 -20.04777 -18.93208 -17.79903 -17.24103 -16.83009 -16.32168 -16.28333 -15.95160 -15.82687 -15.36191 -14.97971 -14.76454 -14.52757 -14.24361 -14.02043 -13.73101 -13.52771 -13.41717 -13.34178 -13.17376 -13.05530 -13.00013 -12.63700 -12.19898 -12.15872 -12.13321 -11.87725 -11.66411 -11.49533 -11.39419 -11.34324 -11.24738 -11.12485 -10.93551 -10.46221 -10.38100 -10.20336 -10.08660 -9.46546 -9.18477 -9.02831 -8.83344 -8.46506 -7.95145 -7.86354 -6.40314 -3.80823 1.07233 1.16528 2.48175 2.90651 3.18816 3.27380 3.33647 3.54797 3.93433 4.05666 4.27484 4.29423 4.47803 4.62351 4.67520 4.83687 4.85343 4.91690 4.99504 5.01626 5.09328 5.14640 5.22933 5.24128 5.31295 5.31881 5.39131 5.40039 5.42175 5.52481 5.60260 5.66472 5.78847 5.83399 5.86294 5.87203 5.94756 6.06299 6.20580 6.23107 6.28189 6.29699 6.31941 6.35091 6.51776 6.76465 7.20217 7.30082 7.33777 7.56740 8.06541 8.08325 8.64134 9.20375 9.56671 10.09119 10.77547 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.001509 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.043602 B =18554.448540 C =18944.952124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.507 5.507 4 C 0.040 3.960 5 C 0.122 3.878 6 N -0.731 5.731 7 C 0.512 3.488 8 O -0.527 6.527 9 C -0.103 4.103 10 C -0.062 4.062 11 C -0.111 4.111 12 C -0.116 4.116 13 C -0.122 4.122 14 C -0.086 4.086 15 C -0.115 4.115 16 C -0.105 4.105 17 C 0.043 3.957 18 C 0.445 3.555 19 O -0.574 6.574 20 N -0.567 5.567 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.399 0.601 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.119 0.881 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.391 0.609 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 3.393 29.057 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.230 5.230 4 C -0.089 4.089 5 C -0.001 4.001 6 N -0.384 5.384 7 C 0.298 3.702 8 O -0.403 6.403 9 C -0.143 4.143 10 C -0.062 4.062 11 C -0.129 4.129 12 C -0.134 4.134 13 C -0.140 4.140 14 C -0.086 4.086 15 C -0.171 4.171 16 C -0.123 4.123 17 C -0.088 4.088 18 C 0.230 3.770 19 O -0.457 6.457 20 N -0.204 5.204 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.232 0.768 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.105 0.895 50 H 0.224 0.776 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.877 2.238 29.119 29.461 hybrid contribution -1.303 0.523 -1.140 1.809 sum -5.180 2.760 27.978 28.588 Atomic orbital electron populations 1.22459 0.98959 1.02309 1.01546 1.22270 0.91867 0.89887 1.04057 1.61667 1.59168 1.02055 1.00160 1.22286 0.97608 0.98585 0.90384 1.21319 1.00193 0.95946 0.82667 1.45958 1.49488 1.36720 1.06215 1.20486 0.81319 0.84415 0.84015 1.90760 1.34287 1.29191 1.86040 1.20683 1.02170 1.00679 0.90722 1.19234 0.95346 0.96696 0.94941 1.20950 1.00257 0.96034 0.95668 1.21073 0.96011 0.99767 0.96513 1.21020 0.95663 0.97041 1.00308 1.19876 0.96793 0.96456 0.95499 1.20796 0.94225 1.01131 1.00969 1.20854 0.94937 1.00571 0.95954 1.21919 0.98011 0.98808 0.90102 1.19736 0.87451 0.86330 0.83505 1.90526 1.34256 1.37038 1.83926 1.41866 1.32914 1.40738 1.04880 1.19700 1.14423 1.23715 0.84888 0.87938 1.25241 0.97245 0.96731 0.98730 1.69612 1.30710 1.32076 1.22088 0.85870 0.80061 0.78267 0.80170 1.20469 1.20965 1.19423 0.92895 0.92259 0.92117 0.88805 0.90913 0.93961 0.90387 0.90338 0.91259 0.76767 0.87932 0.87891 0.86325 0.86094 0.86241 0.91058 0.91558 0.91620 0.86257 0.92851 0.89481 0.77591 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.47 9.26 37.16 0.34 -2.12 16 2 C 0.05 0.73 5.52 -3.82 -0.02 0.71 16 3 N -0.51 -8.06 4.31 -236.07 -1.02 -9.08 16 4 C 0.04 0.46 4.81 -3.82 -0.02 0.44 16 5 C 0.12 1.44 5.60 -4.04 -0.02 1.42 16 6 N -0.73 -6.58 5.56 -60.30 -0.33 -6.92 16 7 C 0.51 5.49 7.82 -10.99 -0.09 5.40 16 8 O -0.53 -8.23 16.03 5.56 0.09 -8.14 16 9 C -0.10 -0.73 5.83 -29.04 -0.17 -0.90 16 10 C -0.06 -0.58 4.37 -104.62 -0.46 -1.03 16 11 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 12 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 13 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 14 C -0.09 -0.77 5.88 -104.62 -0.62 -1.39 16 15 C -0.11 -0.75 10.01 36.01 0.36 -0.39 16 16 C -0.11 -0.99 9.36 -39.58 -0.37 -1.36 16 17 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16 18 C 0.44 10.37 7.36 -10.99 -0.08 10.29 16 19 O -0.57 -15.52 14.70 5.55 0.08 -15.44 16 20 N -0.57 -14.23 5.29 -10.96 -0.06 -14.28 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 29 H 0.05 0.58 6.26 -51.93 -0.33 0.26 16 30 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.79 6.54 -51.93 -0.34 1.45 16 33 H 0.07 1.06 6.51 -51.93 -0.34 0.72 16 34 H 0.04 0.43 5.98 -51.93 -0.31 0.12 16 35 H 0.08 0.82 7.86 -51.92 -0.41 0.41 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.90 6.57 -51.93 -0.34 0.56 16 38 H 0.40 2.26 8.47 -40.82 -0.35 1.91 16 39 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.10 0.51 8.09 -51.92 -0.42 0.09 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 43 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.05 0.83 5.97 -51.93 -0.31 0.52 16 49 H 0.09 1.34 7.81 -51.93 -0.41 0.93 16 50 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 51 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 416.24 15.07 6.27 6.27 Total: -1.00 -34.93 416.24 -9.76 -44.69 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: -7.92 Total: 10.95 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.57 Total: -0.40 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: -0.69 Total: -54.00 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.93 -9.76 -44.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753087728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.666 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds