Wall clock time and date at job start Wed Apr 1 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47076 * 2 1 4 4 C 1.46899 * 110.99748 * 59.18113 * 3 2 1 5 5 C 1.53003 * 109.47035 * 66.05090 * 4 3 2 6 6 N 1.46497 * 109.46823 * 179.97438 * 5 4 3 7 7 C 1.34780 * 119.99776 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00282 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00122 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47401 * 180.02562 * 9 7 6 11 11 C 1.38265 * 119.99731 * 270.21317 * 10 9 7 12 12 C 1.38215 * 119.99504 * 180.25013 * 11 10 9 13 13 C 1.38257 * 120.00209 * 359.51696 * 12 11 10 14 14 C 1.38207 * 119.99914 * 0.27104 * 13 12 11 15 15 C 1.50702 * 119.99833 * 179.97438 * 14 13 12 16 16 C 1.38211 * 120.00092 * 89.99960 * 10 9 7 17 17 C 1.46901 * 110.99579 * 295.23055 * 3 2 1 18 18 C 1.50696 * 109.47065 * 288.23527 * 17 3 2 19 19 O 1.21293 * 120.00494 * 354.30314 * 18 17 3 20 20 N 1.34781 * 120.00195 * 174.30452 * 18 17 3 21 21 C 1.37094 * 120.00357 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99650 * 0.02562 * 21 20 18 23 23 C 1.38953 * 120.00043 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99997 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99888 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.46845 * 90.00342 * 25 23 21 27 27 H 1.48499 * 109.47193 * 210.00198 * 25 23 21 28 28 H 1.48502 * 109.47262 * 330.00604 * 25 23 21 29 29 H 1.09001 * 109.46938 * 299.98444 * 1 2 3 30 30 H 1.08994 * 109.47171 * 59.98795 * 1 2 3 31 31 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47431 * 239.99967 * 2 1 3 33 33 H 1.09007 * 109.47449 * 120.00065 * 2 1 3 34 34 H 1.08997 * 109.47449 * 306.04556 * 4 3 2 35 35 H 1.09007 * 109.46740 * 186.04726 * 4 3 2 36 36 H 1.09002 * 109.47133 * 59.99804 * 5 4 3 37 37 H 1.08998 * 109.47031 * 299.99603 * 5 4 3 38 38 H 0.96998 * 120.00612 * 0.02562 * 6 5 4 39 39 H 1.09003 * 109.47444 * 60.00043 * 9 7 6 40 40 H 1.09010 * 109.47428 * 300.00669 * 9 7 6 41 41 H 1.07992 * 120.00417 * 0.04312 * 11 10 9 42 42 H 1.08002 * 119.99827 * 179.78607 * 12 11 10 43 43 H 1.08005 * 120.00001 * 180.25669 * 13 12 11 44 44 H 1.08992 * 109.47591 * 89.99750 * 15 14 13 45 45 H 1.09007 * 109.46842 * 210.00157 * 15 14 13 46 46 H 1.09008 * 109.47024 * 329.99704 * 15 14 13 47 47 H 1.07998 * 120.00362 * 0.02562 * 16 10 9 48 48 H 1.08994 * 109.47436 * 48.23834 * 17 3 2 49 49 H 1.09001 * 109.46634 * 168.23733 * 17 3 2 50 50 H 0.97002 * 119.99820 * 359.97438 * 20 18 17 51 51 H 0.97000 * 119.99744 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5327 2.1155 1.1778 5 6 2.1475 1.5121 2.4423 6 7 1.6623 2.2410 3.6168 7 6 2.0728 1.8825 4.8494 8 8 2.8442 0.9567 4.9863 9 6 1.5733 2.6318 6.0577 10 6 2.1789 2.0377 7.3031 11 6 1.5354 1.0050 7.9598 12 6 2.0882 0.4636 9.1050 13 6 3.2897 0.9478 9.5883 14 6 3.9350 1.9772 8.9294 15 6 5.2443 2.5054 9.4566 16 6 3.3797 2.5221 7.7865 17 6 1.6439 2.0761 -1.2406 18 6 2.4640 1.5369 -2.3842 19 8 3.3516 0.7383 -2.1704 20 7 2.2112 1.9419 -3.6446 21 6 2.9575 1.4517 -4.6849 22 1 3.7478 0.7406 -4.4944 23 6 2.6965 1.8689 -5.9843 24 7 1.7346 2.7337 -6.2161 25 14 3.7130 1.2004 -7.4018 26 1 3.0729 -0.0298 -7.9329 27 1 3.7932 2.2207 -8.4778 28 1 5.0809 0.8788 -6.9216 29 1 -0.3633 0.5136 0.8901 30 1 -0.3633 0.5140 -0.8898 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 0.4467 2.0388 1.2295 35 1 1.8195 3.1642 1.0991 36 1 3.2336 1.5889 2.3905 37 1 1.8607 0.4635 2.5210 38 1 1.0450 2.9812 3.5074 39 1 0.4872 2.5554 6.1093 40 1 1.8603 3.6806 5.9792 41 1 0.5992 0.6237 7.5798 42 1 1.5839 -0.3408 9.6199 43 1 3.7237 0.5219 10.4809 44 1 6.0674 1.9475 9.0102 45 1 5.3397 3.5607 9.2008 46 1 5.2727 2.3902 10.5402 47 1 3.8839 3.3267 7.2719 48 1 0.5857 1.9106 -1.4426 49 1 1.8303 3.1446 -1.1320 50 1 1.5011 2.5802 -3.8157 51 1 1.5521 3.0246 -7.1232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753087728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:03 Heat of formation + Delta-G solvation = -73.146694 kcal Electronic energy + Delta-G solvation = -29159.954503 eV Core-core repulsion = 25057.935845 eV Total energy + Delta-G solvation = -4102.018659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.10591 -40.49962 -39.80749 -38.57714 -35.98299 -35.61263 -34.42154 -33.25423 -32.92477 -31.53068 -30.89010 -28.83128 -27.75679 -27.37468 -25.92680 -24.70981 -23.09828 -22.18726 -21.75048 -21.02529 -20.55106 -19.76056 -18.09420 -17.62655 -17.55746 -17.24641 -17.16677 -16.75266 -16.48517 -16.35468 -15.95684 -15.60453 -15.57859 -15.07676 -14.94162 -14.62108 -14.57930 -14.32341 -14.11747 -13.97479 -13.79941 -13.65442 -13.43028 -13.21917 -13.05304 -12.97281 -12.79542 -12.75256 -12.72532 -12.47568 -12.40124 -12.16228 -12.09361 -11.92929 -11.83506 -11.66789 -11.41210 -11.00209 -10.29858 -10.08003 -9.97531 -9.67456 -9.46472 -9.14077 -8.44882 -5.92917 0.42876 0.52038 1.38150 1.41803 1.54220 1.67720 2.06148 2.10856 2.31598 2.82621 3.01943 3.22208 3.45791 3.68967 3.83793 3.92070 4.02155 4.06162 4.10489 4.17806 4.25909 4.28888 4.32258 4.40939 4.42194 4.49488 4.49947 4.58927 4.60823 4.63401 4.66948 4.81370 4.83411 4.88288 4.89169 4.99310 5.03599 5.12166 5.21008 5.31510 5.33993 5.42131 5.43033 5.58077 5.66624 5.72209 5.89340 6.09314 6.16161 6.20604 6.60065 6.64211 7.16227 7.31363 7.60435 8.17535 8.72454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.001509 C = 0.001478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.043602 B =18554.448540 C =18944.952124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 N -0.534 5.534 4 C 0.048 3.952 5 C 0.132 3.868 6 N -0.714 5.714 7 C 0.510 3.490 8 O -0.584 6.584 9 C -0.093 4.093 10 C -0.076 4.076 11 C -0.128 4.128 12 C -0.127 4.127 13 C -0.136 4.136 14 C -0.101 4.101 15 C -0.113 4.113 16 C -0.125 4.125 17 C 0.057 3.943 18 C 0.441 3.559 19 O -0.618 6.618 20 N -0.576 5.576 21 C -0.332 4.332 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.920 5.920 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.276 1.276 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.419 0.581 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.130 0.870 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.126 0.874 48 H 0.077 0.923 49 H 0.113 0.887 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 4.930 30.000 31.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.079 4.079 5 C 0.007 3.993 6 N -0.368 5.368 7 C 0.298 3.702 8 O -0.463 6.463 9 C -0.133 4.133 10 C -0.077 4.077 11 C -0.146 4.146 12 C -0.144 4.144 13 C -0.154 4.154 14 C -0.101 4.101 15 C -0.170 4.170 16 C -0.143 4.143 17 C -0.074 4.074 18 C 0.228 3.772 19 O -0.503 6.503 20 N -0.214 5.214 21 C -0.462 4.462 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.195 1.195 28 H -0.201 1.201 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.257 0.743 39 H 0.151 0.849 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.144 0.856 48 H 0.094 0.906 49 H 0.131 0.869 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.732 3.830 30.068 30.848 hybrid contribution -0.715 0.015 -1.354 1.531 sum -6.447 3.845 28.714 29.679 Atomic orbital electron populations 1.22356 0.96343 1.03171 1.02340 1.22117 0.93965 0.89707 1.02014 1.61527 1.60732 1.02456 1.01035 1.22294 0.98975 0.98695 0.87951 1.21025 0.98524 0.95751 0.84020 1.45755 1.49254 1.36769 1.04976 1.21153 0.80251 0.83703 0.85099 1.90744 1.36906 1.31830 1.86831 1.20732 1.03669 1.01158 0.87708 1.19545 0.95495 0.96905 0.95746 1.21242 1.01011 0.96300 0.96074 1.21392 0.96227 1.00175 0.96643 1.21324 0.95871 0.97135 1.01022 1.20228 0.97669 0.96627 0.95585 1.20823 0.92988 1.01432 1.01730 1.21121 0.95443 1.01256 0.96503 1.21764 0.97709 0.99684 0.88194 1.20890 0.87004 0.84949 0.84337 1.90498 1.36317 1.38779 1.84726 1.41921 1.33043 1.41174 1.05231 1.19629 1.15213 1.24765 0.86598 0.90625 1.25966 0.98094 0.96661 1.00375 1.69664 1.31201 1.32247 1.22962 0.84974 0.78184 0.78123 0.77329 1.19721 1.19463 1.20055 0.90336 0.92916 0.91403 0.93325 0.90538 0.91208 0.88589 0.93363 0.92661 0.74314 0.84906 0.85230 0.85158 0.84425 0.84615 0.91361 0.90788 0.90307 0.85620 0.90557 0.86888 0.77008 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.30 9.26 71.98 0.67 -3.63 16 2 C 0.05 1.54 5.52 86.30 0.48 2.02 16 3 N -0.53 -16.40 4.31 -900.78 -3.88 -20.28 16 4 C 0.05 0.98 4.81 86.30 0.41 1.40 16 5 C 0.13 2.94 5.60 86.38 0.48 3.43 16 6 N -0.71 -11.13 5.56 -463.06 -2.57 -13.70 16 7 C 0.51 10.18 7.82 87.66 0.69 10.86 16 8 O -0.58 -18.34 16.03 -3.03 -0.05 -18.39 16 9 C -0.09 -1.09 5.83 29.10 0.17 -0.92 16 10 C -0.08 -1.35 4.37 -19.87 -0.09 -1.43 16 11 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 12 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 13 C -0.14 -2.26 9.70 22.27 0.22 -2.04 16 14 C -0.10 -1.77 5.88 -19.87 -0.12 -1.88 16 15 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 16 C -0.13 -2.30 9.36 22.27 0.21 -2.09 16 17 C 0.06 1.89 5.34 85.56 0.46 2.34 16 18 C 0.44 20.91 7.36 87.66 0.65 21.55 16 19 O -0.62 -34.74 14.70 -3.07 -0.05 -34.79 16 20 N -0.58 -29.40 5.29 -306.98 -1.62 -31.02 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 22 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 24 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 25 Si 0.99 43.26 29.55 68.60 2.03 45.28 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 29 H 0.08 1.43 6.26 -2.39 -0.01 1.42 16 30 H 0.05 1.31 6.29 -2.39 -0.02 1.29 16 31 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.05 1.94 6.54 -2.39 -0.02 1.92 16 33 H 0.08 2.26 6.51 -2.38 -0.02 2.24 16 34 H 0.07 1.08 5.98 -2.39 -0.01 1.07 16 35 H 0.10 1.65 7.86 -2.38 -0.02 1.63 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.41 6.57 -2.39 -0.02 1.39 16 38 H 0.42 3.10 8.47 -92.71 -0.79 2.32 16 39 H 0.13 0.76 8.09 -2.39 -0.02 0.74 16 40 H 0.13 0.83 8.09 -2.38 -0.02 0.81 16 41 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.07 0.78 8.09 -2.38 -0.02 0.76 16 46 H 0.08 0.74 8.09 -2.38 -0.02 0.72 16 47 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.08 2.19 5.97 -2.39 -0.01 2.18 16 49 H 0.11 3.15 7.81 -2.39 -0.02 3.14 16 50 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 51 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -79.84 416.24 0.23 -79.60 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: -0.56 Total: 35.67 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 6.65 Total: 6.69 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -7.79 Total: -114.07 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -0.09 Total: -53.18 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -79.84 0.23 -79.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753087728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.457 kcal (2) G-P(sol) polarization free energy of solvation -79.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds