Wall clock time and date at job start Wed Apr 1 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47274 * 2 1 4 4 C 1.46900 * 111.00311 * 76.02430 * 3 2 1 5 5 C 1.52993 * 109.47105 * 199.55035 * 4 3 2 6 6 N 1.46499 * 109.47106 * 174.88992 * 5 4 3 7 7 C 1.34775 * 119.99935 * 180.27830 * 6 5 4 8 8 O 1.21284 * 120.00184 * 359.71676 * 7 6 5 9 9 C 1.50701 * 120.00215 * 179.72276 * 7 6 5 10 10 H 1.09005 * 109.46796 * 299.99870 * 9 7 6 11 11 C 1.53004 * 109.47007 * 59.99312 * 9 7 6 12 12 C 1.50701 * 109.47500 * 179.97438 * 9 7 6 13 13 C 1.38232 * 120.00055 * 299.72826 * 12 9 7 14 14 C 1.38231 * 119.99734 * 179.80868 * 13 12 9 15 15 C 1.38243 * 120.00327 * 0.39452 * 14 13 12 16 16 C 1.38240 * 119.99396 * 359.85904 * 15 14 13 17 17 C 1.38226 * 120.00255 * 359.95455 * 16 15 14 18 18 C 1.46898 * 111.00001 * 199.98172 * 3 2 1 19 19 C 1.50706 * 109.47342 * 66.04305 * 18 3 2 20 20 O 1.21291 * 119.99596 * 0.02562 * 19 18 3 21 21 N 1.34777 * 119.99859 * 180.02562 * 19 18 3 22 22 C 1.37098 * 119.99711 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99874 * 359.97438 * 22 21 19 24 24 C 1.38950 * 119.99999 * 179.97438 * 22 21 19 25 25 N 1.31417 * 119.99766 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 119.99954 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47279 * 59.99969 * 26 24 22 28 28 H 1.48501 * 109.47056 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47363 * 299.99920 * 26 24 22 30 30 H 1.08997 * 109.46993 * 294.87380 * 1 2 3 31 31 H 1.08995 * 109.47042 * 54.87492 * 1 2 3 32 32 H 1.09001 * 109.46827 * 174.87474 * 1 2 3 33 33 H 1.09000 * 109.47515 * 239.99791 * 2 1 3 34 34 H 1.08999 * 109.47234 * 119.99677 * 2 1 3 35 35 H 1.08998 * 109.46944 * 79.54665 * 4 3 2 36 36 H 1.08999 * 109.46459 * 319.54790 * 4 3 2 37 37 H 1.09001 * 109.47750 * 54.88324 * 5 4 3 38 38 H 1.09009 * 109.47202 * 294.88758 * 5 4 3 39 39 H 0.96997 * 119.99907 * 359.97438 * 6 5 4 40 40 H 1.09007 * 109.46898 * 180.02562 * 11 9 7 41 41 H 1.09001 * 109.47309 * 300.00311 * 11 9 7 42 42 H 1.09000 * 109.47310 * 60.00573 * 11 9 7 43 43 H 1.08002 * 119.99919 * 359.97438 * 13 12 9 44 44 H 1.08002 * 119.99841 * 180.23045 * 14 13 12 45 45 H 1.07990 * 120.00043 * 179.83212 * 15 14 13 46 46 H 1.07999 * 119.99237 * 179.97438 * 16 15 14 47 47 H 1.08006 * 120.00417 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.47076 * 186.04454 * 18 3 2 49 49 H 1.08996 * 109.47213 * 306.04383 * 18 3 2 50 50 H 0.96999 * 120.00148 * 359.97438 * 21 19 18 51 51 H 0.96993 * 119.99647 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8829 1.9918 1.3308 5 6 1.9278 3.5158 1.2035 6 7 1.6698 4.1229 2.5115 7 6 1.6545 5.4644 2.6406 8 8 1.8595 6.1689 1.6749 9 6 1.3830 6.0890 3.9849 10 1 0.3990 5.7794 4.3372 11 6 2.4489 5.6336 4.9836 12 6 1.4223 7.5902 3.8585 13 6 2.5774 8.2178 3.4311 14 6 2.6122 9.5945 3.3114 15 6 1.4944 10.3443 3.6269 16 6 0.3410 9.7169 4.0593 17 6 0.3050 8.3400 4.1753 18 6 3.4103 1.4516 -0.4686 19 6 3.4712 1.0498 -1.9199 20 8 2.4559 0.7389 -2.5061 21 7 4.6539 1.0358 -2.5661 22 6 4.7092 0.6708 -3.8864 23 1 3.8052 0.3940 -4.4085 24 6 5.9283 0.6569 -4.5529 25 7 7.0282 0.9942 -3.9178 26 14 6.0038 0.1588 -6.3517 27 1 5.1653 1.0828 -7.1568 28 1 7.4097 0.2256 -6.8252 29 1 5.4965 -1.2287 -6.5028 30 1 -0.3633 0.4322 0.9323 31 1 -0.3633 0.5913 -0.8405 32 1 -0.3633 -1.0236 -0.0918 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.7005 1.6562 1.9688 36 1 0.9319 1.6918 1.7708 37 1 1.1678 3.8437 0.4943 38 1 2.9120 3.8219 0.8486 39 1 1.5056 3.5595 3.2838 40 1 2.2521 6.0851 5.9560 41 1 2.4208 4.5478 5.0751 42 1 3.4328 5.9432 4.6313 43 1 3.4519 7.6323 3.1882 44 1 3.5135 10.0846 2.9740 45 1 1.5225 11.4200 3.5360 46 1 -0.5321 10.3027 4.3061 47 1 -0.5964 7.8498 4.5127 48 1 3.7827 2.4701 -0.3577 49 1 4.0258 0.7734 0.1223 50 1 5.4657 1.2848 -2.0973 51 1 7.8792 0.9849 -4.3831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753092679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:13 Heat of formation + Delta-G solvation = -71.116310 kcal Electronic energy + Delta-G solvation = -29757.922740 eV Core-core repulsion = 25655.992125 eV Total energy + Delta-G solvation = -4101.930615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.32883 -40.47420 -39.62282 -38.32630 -36.02833 -35.63446 -35.11835 -33.30914 -32.08658 -31.76508 -30.82063 -29.83107 -27.78826 -26.13703 -25.51338 -23.89216 -23.44454 -22.55245 -22.25639 -21.03291 -20.71300 -19.86580 -18.18392 -17.93808 -17.75574 -17.12888 -16.88183 -16.48353 -16.39262 -16.19550 -15.89705 -15.69913 -15.45170 -15.38060 -15.07676 -14.75103 -14.45641 -14.34070 -14.15018 -14.03830 -13.68385 -13.66479 -13.42515 -13.17892 -13.00482 -12.99968 -12.82913 -12.67157 -12.57331 -12.46782 -12.43466 -12.15078 -12.01440 -11.84964 -11.77744 -11.74600 -11.40408 -10.81676 -10.26173 -10.09764 -9.99558 -9.75837 -9.60808 -9.22666 -8.46435 -5.94909 0.44590 0.55419 1.38789 1.40272 1.51289 1.65070 2.05211 2.06255 2.29318 2.83736 2.99387 3.20423 3.38108 3.57936 3.80021 3.90435 4.01929 4.10765 4.14899 4.17835 4.25152 4.27541 4.29769 4.37369 4.39949 4.46954 4.56959 4.60385 4.64000 4.70387 4.72973 4.81048 4.85420 4.92591 4.94662 5.06400 5.14940 5.18626 5.22688 5.27695 5.40207 5.41196 5.43625 5.59215 5.65610 5.71025 5.89765 6.09067 6.14962 6.22412 6.58067 6.60768 7.13126 7.29146 7.56889 8.12756 8.70907 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012083 B = 0.001994 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.693408 B =14041.831427 C =15581.378118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.535 5.535 4 C 0.054 3.946 5 C 0.129 3.871 6 N -0.710 5.710 7 C 0.511 3.489 8 O -0.580 6.580 9 C -0.062 4.062 10 H 0.134 0.866 11 C -0.137 4.137 12 C -0.083 4.083 13 C -0.106 4.106 14 C -0.140 4.140 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.121 4.121 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.611 6.611 21 N -0.576 5.576 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.993 3.007 27 H -0.274 1.274 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.418 0.582 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.048 0.952 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.139 0.861 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.099 0.901 49 H 0.072 0.928 50 H 0.395 0.605 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 10.074 25.989 29.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.073 4.073 3 N -0.261 5.261 4 C -0.074 4.074 5 C 0.004 3.996 6 N -0.364 5.364 7 C 0.298 3.702 8 O -0.459 6.459 9 C -0.083 4.083 10 H 0.152 0.848 11 C -0.195 4.195 12 C -0.083 4.083 13 C -0.125 4.125 14 C -0.158 4.158 15 C -0.147 4.147 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.497 6.497 21 N -0.214 5.214 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.195 1.195 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.256 0.744 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.146 0.854 45 H 0.157 0.843 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.117 0.883 49 H 0.090 0.910 50 H 0.228 0.772 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.412 10.608 24.518 29.050 hybrid contribution 1.350 -0.636 -0.515 1.578 sum -10.063 9.973 24.003 27.872 Atomic orbital electron populations 1.21635 0.93778 1.01668 1.01837 1.22094 0.97220 0.87521 1.00496 1.61355 1.18733 1.20266 1.25699 1.22257 1.03756 0.92218 0.89142 1.21076 1.00484 0.93079 0.84917 1.45705 1.72446 1.06405 1.11829 1.21130 0.75631 0.82192 0.91244 1.90752 1.50165 1.62651 1.42342 1.20354 1.04386 0.91423 0.92180 0.84816 1.21822 0.96507 1.02931 0.98217 1.19571 0.94311 0.94385 1.00044 1.21006 0.98091 0.94973 0.98390 1.21369 0.99643 0.94063 1.00685 1.21451 0.93255 1.00886 0.99153 1.21445 0.98753 0.94880 0.99741 1.21342 0.97897 0.94461 1.00160 1.21769 0.90940 1.02754 0.92009 1.20773 0.83319 0.82951 0.90160 1.90481 1.35153 1.54216 1.69824 1.41950 1.08285 1.60257 1.10916 1.19610 0.94865 1.44006 0.87577 0.90307 1.26046 0.94128 0.96980 1.04323 1.69671 0.99083 1.48450 1.39072 0.84996 0.77568 0.78823 0.76995 1.19918 1.19497 1.19520 0.90940 0.94337 0.91566 0.92923 0.93058 0.91780 0.87666 0.93168 0.93402 0.74399 0.89742 0.89408 0.93284 0.87655 0.85449 0.84343 0.83786 0.83782 0.88256 0.91022 0.77164 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.35 9.96 71.98 0.72 -2.63 16 2 C 0.05 1.61 5.18 86.30 0.45 2.06 16 3 N -0.54 -16.50 4.10 -900.81 -3.69 -20.19 16 4 C 0.05 1.10 4.92 86.30 0.42 1.53 16 5 C 0.13 3.10 5.70 86.38 0.49 3.60 16 6 N -0.71 -12.19 5.45 -463.06 -2.52 -14.71 16 7 C 0.51 11.29 7.03 87.66 0.62 11.90 16 8 O -0.58 -19.46 15.13 -3.04 -0.05 -19.51 16 9 C -0.06 -0.89 2.90 -12.28 -0.04 -0.92 16 10 H 0.13 1.09 7.88 -2.38 -0.02 1.07 16 11 C -0.14 -1.31 8.90 71.98 0.64 -0.67 16 12 C -0.08 -1.58 4.39 -19.87 -0.09 -1.66 16 13 C -0.11 -2.38 7.94 22.27 0.18 -2.21 16 14 C -0.14 -2.84 10.05 22.27 0.22 -2.61 16 15 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 16 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 17 C -0.12 -1.95 9.67 22.27 0.22 -1.74 16 18 C 0.06 1.97 5.28 85.56 0.45 2.42 16 19 C 0.44 21.33 7.29 87.66 0.64 21.97 16 20 O -0.61 -33.97 14.12 -3.07 -0.04 -34.01 16 21 N -0.58 -30.28 5.29 -306.98 -1.62 -31.90 16 22 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 24 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16 25 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 26 Si 0.99 43.91 29.55 68.60 2.03 45.93 16 27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 30 H 0.07 1.39 6.91 -2.39 -0.02 1.37 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 2.06 5.85 -2.39 -0.01 2.04 16 34 H 0.05 1.23 7.99 -2.39 -0.02 1.21 16 35 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16 36 H 0.11 1.65 6.58 -2.39 -0.02 1.63 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.05 1.36 6.95 -2.38 -0.02 1.34 16 39 H 0.42 3.61 7.89 -92.71 -0.73 2.88 16 40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.09 0.43 7.56 -2.39 -0.02 0.41 16 42 H 0.05 0.64 7.37 -2.39 -0.02 0.62 16 43 H 0.11 2.51 7.51 -2.91 -0.02 2.49 16 44 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.14 1.71 8.06 -2.92 -0.02 1.69 16 46 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 47 H 0.14 1.51 7.95 -2.91 -0.02 1.49 16 48 H 0.10 3.27 6.71 -2.39 -0.02 3.25 16 49 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 50 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16 51 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -79.34 415.89 0.51 -78.83 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.52 Total: 37.59 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.65 Total: 8.50 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -7.56 Total: -117.33 kcal Atomic # 8 Polarization: -53.43 SS G_CDS: -0.09 Total: -53.52 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -79.34 0.51 -78.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753092679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.710 kcal (2) G-P(sol) polarization free energy of solvation -79.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds