Wall clock time and date at job start Wed Apr 1 2020 05:52:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46900 * 109.47274 * 2 1
4 4 C 1.46900 * 111.00311 * 76.02430 * 3 2 1
5 5 C 1.52993 * 109.47105 * 199.55035 * 4 3 2
6 6 N 1.46499 * 109.47106 * 174.88992 * 5 4 3
7 7 C 1.34775 * 119.99935 * 180.27830 * 6 5 4
8 8 O 1.21284 * 120.00184 * 359.71676 * 7 6 5
9 9 C 1.50701 * 120.00215 * 179.72276 * 7 6 5
10 10 H 1.09005 * 109.46796 * 299.99870 * 9 7 6
11 11 C 1.53004 * 109.47007 * 59.99312 * 9 7 6
12 12 C 1.50701 * 109.47500 * 179.97438 * 9 7 6
13 13 C 1.38232 * 120.00055 * 299.72826 * 12 9 7
14 14 C 1.38231 * 119.99734 * 179.80868 * 13 12 9
15 15 C 1.38243 * 120.00327 * 0.39452 * 14 13 12
16 16 C 1.38240 * 119.99396 * 359.85904 * 15 14 13
17 17 C 1.38226 * 120.00255 * 359.95455 * 16 15 14
18 18 C 1.46898 * 111.00001 * 199.98172 * 3 2 1
19 19 C 1.50706 * 109.47342 * 66.04305 * 18 3 2
20 20 O 1.21291 * 119.99596 * 0.02562 * 19 18 3
21 21 N 1.34777 * 119.99859 * 180.02562 * 19 18 3
22 22 C 1.37098 * 119.99711 * 180.02562 * 21 19 18
23 23 H 1.07998 * 119.99874 * 359.97438 * 22 21 19
24 24 C 1.38950 * 119.99999 * 179.97438 * 22 21 19
25 25 N 1.31417 * 119.99766 * 359.97438 * 24 22 21
26 26 Si 1.86794 * 119.99954 * 179.97438 * 24 22 21
27 27 H 1.48500 * 109.47279 * 59.99969 * 26 24 22
28 28 H 1.48501 * 109.47056 * 180.02562 * 26 24 22
29 29 H 1.48503 * 109.47363 * 299.99920 * 26 24 22
30 30 H 1.08997 * 109.46993 * 294.87380 * 1 2 3
31 31 H 1.08995 * 109.47042 * 54.87492 * 1 2 3
32 32 H 1.09001 * 109.46827 * 174.87474 * 1 2 3
33 33 H 1.09000 * 109.47515 * 239.99791 * 2 1 3
34 34 H 1.08999 * 109.47234 * 119.99677 * 2 1 3
35 35 H 1.08998 * 109.46944 * 79.54665 * 4 3 2
36 36 H 1.08999 * 109.46459 * 319.54790 * 4 3 2
37 37 H 1.09001 * 109.47750 * 54.88324 * 5 4 3
38 38 H 1.09009 * 109.47202 * 294.88758 * 5 4 3
39 39 H 0.96997 * 119.99907 * 359.97438 * 6 5 4
40 40 H 1.09007 * 109.46898 * 180.02562 * 11 9 7
41 41 H 1.09001 * 109.47309 * 300.00311 * 11 9 7
42 42 H 1.09000 * 109.47310 * 60.00573 * 11 9 7
43 43 H 1.08002 * 119.99919 * 359.97438 * 13 12 9
44 44 H 1.08002 * 119.99841 * 180.23045 * 14 13 12
45 45 H 1.07990 * 120.00043 * 179.83212 * 15 14 13
46 46 H 1.07999 * 119.99237 * 179.97438 * 16 15 14
47 47 H 1.08006 * 120.00417 * 180.02562 * 17 16 15
48 48 H 1.09002 * 109.47076 * 186.04454 * 18 3 2
49 49 H 1.08996 * 109.47213 * 306.04383 * 18 3 2
50 50 H 0.96999 * 120.00148 * 359.97438 * 21 19 18
51 51 H 0.96993 * 119.99647 * 180.02562 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8829 1.9918 1.3308
5 6 1.9278 3.5158 1.2035
6 7 1.6698 4.1229 2.5115
7 6 1.6545 5.4644 2.6406
8 8 1.8595 6.1689 1.6749
9 6 1.3830 6.0890 3.9849
10 1 0.3990 5.7794 4.3372
11 6 2.4489 5.6336 4.9836
12 6 1.4223 7.5902 3.8585
13 6 2.5774 8.2178 3.4311
14 6 2.6122 9.5945 3.3114
15 6 1.4944 10.3443 3.6269
16 6 0.3410 9.7169 4.0593
17 6 0.3050 8.3400 4.1753
18 6 3.4103 1.4516 -0.4686
19 6 3.4712 1.0498 -1.9199
20 8 2.4559 0.7389 -2.5061
21 7 4.6539 1.0358 -2.5661
22 6 4.7092 0.6708 -3.8864
23 1 3.8052 0.3940 -4.4085
24 6 5.9283 0.6569 -4.5529
25 7 7.0282 0.9942 -3.9178
26 14 6.0038 0.1588 -6.3517
27 1 5.1653 1.0828 -7.1568
28 1 7.4097 0.2256 -6.8252
29 1 5.4965 -1.2287 -6.5028
30 1 -0.3633 0.4322 0.9323
31 1 -0.3633 0.5913 -0.8405
32 1 -0.3633 -1.0236 -0.0918
33 1 1.8934 -0.5138 -0.8899
34 1 1.8933 -0.5138 0.8900
35 1 2.7005 1.6562 1.9688
36 1 0.9319 1.6918 1.7708
37 1 1.1678 3.8437 0.4943
38 1 2.9120 3.8219 0.8486
39 1 1.5056 3.5595 3.2838
40 1 2.2521 6.0851 5.9560
41 1 2.4208 4.5478 5.0751
42 1 3.4328 5.9432 4.6313
43 1 3.4519 7.6323 3.1882
44 1 3.5135 10.0846 2.9740
45 1 1.5225 11.4200 3.5360
46 1 -0.5321 10.3027 4.3061
47 1 -0.5964 7.8498 4.5127
48 1 3.7827 2.4701 -0.3577
49 1 4.0258 0.7734 0.1223
50 1 5.4657 1.2848 -2.0973
51 1 7.8792 0.9849 -4.3831
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753092679.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:52:13
Heat of formation + Delta-G solvation = -71.116310 kcal
Electronic energy + Delta-G solvation = -29757.922740 eV
Core-core repulsion = 25655.992125 eV
Total energy + Delta-G solvation = -4101.930615 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-41.32883 -40.47420 -39.62282 -38.32630 -36.02833 -35.63446 -35.11835 -33.30914
-32.08658 -31.76508 -30.82063 -29.83107 -27.78826 -26.13703 -25.51338 -23.89216
-23.44454 -22.55245 -22.25639 -21.03291 -20.71300 -19.86580 -18.18392 -17.93808
-17.75574 -17.12888 -16.88183 -16.48353 -16.39262 -16.19550 -15.89705 -15.69913
-15.45170 -15.38060 -15.07676 -14.75103 -14.45641 -14.34070 -14.15018 -14.03830
-13.68385 -13.66479 -13.42515 -13.17892 -13.00482 -12.99968 -12.82913 -12.67157
-12.57331 -12.46782 -12.43466 -12.15078 -12.01440 -11.84964 -11.77744 -11.74600
-11.40408 -10.81676 -10.26173 -10.09764 -9.99558 -9.75837 -9.60808 -9.22666
-8.46435 -5.94909 0.44590 0.55419 1.38789 1.40272 1.51289 1.65070
2.05211 2.06255 2.29318 2.83736 2.99387 3.20423 3.38108 3.57936
3.80021 3.90435 4.01929 4.10765 4.14899 4.17835 4.25152 4.27541
4.29769 4.37369 4.39949 4.46954 4.56959 4.60385 4.64000 4.70387
4.72973 4.81048 4.85420 4.92591 4.94662 5.06400 5.14940 5.18626
5.22688 5.27695 5.40207 5.41196 5.43625 5.59215 5.65610 5.71025
5.89765 6.09067 6.14962 6.22412 6.58067 6.60768 7.13126 7.29146
7.56889 8.12756 8.70907
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012083 B = 0.001994 C = 0.001797
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2316.693408 B =14041.831427 C =15581.378118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.054 3.946
3 N -0.535 5.535
4 C 0.054 3.946
5 C 0.129 3.871
6 N -0.710 5.710
7 C 0.511 3.489
8 O -0.580 6.580
9 C -0.062 4.062
10 H 0.134 0.866
11 C -0.137 4.137
12 C -0.083 4.083
13 C -0.106 4.106
14 C -0.140 4.140
15 C -0.130 4.130
16 C -0.130 4.130
17 C -0.121 4.121
18 C 0.056 3.944
19 C 0.441 3.559
20 O -0.611 6.611
21 N -0.576 5.576
22 C -0.331 4.331
23 H 0.079 0.921
24 C -0.015 4.015
25 N -0.922 5.922
26 Si 0.993 3.007
27 H -0.274 1.274
28 H -0.270 1.270
29 H -0.270 1.270
30 H 0.072 0.928
31 H 0.037 0.963
32 H 0.065 0.935
33 H 0.052 0.948
34 H 0.051 0.949
35 H 0.064 0.936
36 H 0.105 0.895
37 H 0.050 0.950
38 H 0.048 0.952
39 H 0.418 0.582
40 H 0.084 0.916
41 H 0.087 0.913
42 H 0.048 0.952
43 H 0.105 0.895
44 H 0.128 0.872
45 H 0.139 0.861
46 H 0.144 0.856
47 H 0.144 0.856
48 H 0.099 0.901
49 H 0.072 0.928
50 H 0.395 0.605
51 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.801 10.074 25.989 29.892
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.073 4.073
3 N -0.261 5.261
4 C -0.074 4.074
5 C 0.004 3.996
6 N -0.364 5.364
7 C 0.298 3.702
8 O -0.459 6.459
9 C -0.083 4.083
10 H 0.152 0.848
11 C -0.195 4.195
12 C -0.083 4.083
13 C -0.125 4.125
14 C -0.158 4.158
15 C -0.147 4.147
16 C -0.148 4.148
17 C -0.139 4.139
18 C -0.075 4.075
19 C 0.228 3.772
20 O -0.497 6.497
21 N -0.214 5.214
22 C -0.461 4.461
23 H 0.097 0.903
24 C -0.215 4.215
25 N -0.563 5.563
26 Si 0.816 3.184
27 H -0.199 1.199
28 H -0.195 1.195
29 H -0.195 1.195
30 H 0.091 0.909
31 H 0.057 0.943
32 H 0.084 0.916
33 H 0.071 0.929
34 H 0.069 0.931
35 H 0.082 0.918
36 H 0.123 0.877
37 H 0.068 0.932
38 H 0.066 0.934
39 H 0.256 0.744
40 H 0.103 0.897
41 H 0.106 0.894
42 H 0.067 0.933
43 H 0.123 0.877
44 H 0.146 0.854
45 H 0.157 0.843
46 H 0.162 0.838
47 H 0.162 0.838
48 H 0.117 0.883
49 H 0.090 0.910
50 H 0.228 0.772
51 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -11.412 10.608 24.518 29.050
hybrid contribution 1.350 -0.636 -0.515 1.578
sum -10.063 9.973 24.003 27.872
Atomic orbital electron populations
1.21635 0.93778 1.01668 1.01837 1.22094 0.97220 0.87521 1.00496
1.61355 1.18733 1.20266 1.25699 1.22257 1.03756 0.92218 0.89142
1.21076 1.00484 0.93079 0.84917 1.45705 1.72446 1.06405 1.11829
1.21130 0.75631 0.82192 0.91244 1.90752 1.50165 1.62651 1.42342
1.20354 1.04386 0.91423 0.92180 0.84816 1.21822 0.96507 1.02931
0.98217 1.19571 0.94311 0.94385 1.00044 1.21006 0.98091 0.94973
0.98390 1.21369 0.99643 0.94063 1.00685 1.21451 0.93255 1.00886
0.99153 1.21445 0.98753 0.94880 0.99741 1.21342 0.97897 0.94461
1.00160 1.21769 0.90940 1.02754 0.92009 1.20773 0.83319 0.82951
0.90160 1.90481 1.35153 1.54216 1.69824 1.41950 1.08285 1.60257
1.10916 1.19610 0.94865 1.44006 0.87577 0.90307 1.26046 0.94128
0.96980 1.04323 1.69671 0.99083 1.48450 1.39072 0.84996 0.77568
0.78823 0.76995 1.19918 1.19497 1.19520 0.90940 0.94337 0.91566
0.92923 0.93058 0.91780 0.87666 0.93168 0.93402 0.74399 0.89742
0.89408 0.93284 0.87655 0.85449 0.84343 0.83786 0.83782 0.88256
0.91022 0.77164 0.91359
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.35 9.96 71.98 0.72 -2.63 16
2 C 0.05 1.61 5.18 86.30 0.45 2.06 16
3 N -0.54 -16.50 4.10 -900.81 -3.69 -20.19 16
4 C 0.05 1.10 4.92 86.30 0.42 1.53 16
5 C 0.13 3.10 5.70 86.38 0.49 3.60 16
6 N -0.71 -12.19 5.45 -463.06 -2.52 -14.71 16
7 C 0.51 11.29 7.03 87.66 0.62 11.90 16
8 O -0.58 -19.46 15.13 -3.04 -0.05 -19.51 16
9 C -0.06 -0.89 2.90 -12.28 -0.04 -0.92 16
10 H 0.13 1.09 7.88 -2.38 -0.02 1.07 16
11 C -0.14 -1.31 8.90 71.98 0.64 -0.67 16
12 C -0.08 -1.58 4.39 -19.87 -0.09 -1.66 16
13 C -0.11 -2.38 7.94 22.27 0.18 -2.21 16
14 C -0.14 -2.84 10.05 22.27 0.22 -2.61 16
15 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16
16 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16
17 C -0.12 -1.95 9.67 22.27 0.22 -1.74 16
18 C 0.06 1.97 5.28 85.56 0.45 2.42 16
19 C 0.44 21.33 7.29 87.66 0.64 21.97 16
20 O -0.61 -33.97 14.12 -3.07 -0.04 -34.01 16
21 N -0.58 -30.28 5.29 -306.98 -1.62 -31.90 16
22 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16
23 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16
24 C -0.02 -0.84 5.50 84.93 0.47 -0.37 16
25 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16
26 Si 0.99 43.91 29.55 68.60 2.03 45.93 16
27 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
29 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
30 H 0.07 1.39 6.91 -2.39 -0.02 1.37 16
31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16
33 H 0.05 2.06 5.85 -2.39 -0.01 2.04 16
34 H 0.05 1.23 7.99 -2.39 -0.02 1.21 16
35 H 0.06 1.05 8.00 -2.39 -0.02 1.03 16
36 H 0.11 1.65 6.58 -2.39 -0.02 1.63 16
37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
38 H 0.05 1.36 6.95 -2.38 -0.02 1.34 16
39 H 0.42 3.61 7.89 -92.71 -0.73 2.88 16
40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16
41 H 0.09 0.43 7.56 -2.39 -0.02 0.41 16
42 H 0.05 0.64 7.37 -2.39 -0.02 0.62 16
43 H 0.11 2.51 7.51 -2.91 -0.02 2.49 16
44 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16
45 H 0.14 1.71 8.06 -2.92 -0.02 1.69 16
46 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16
47 H 0.14 1.51 7.95 -2.91 -0.02 1.49 16
48 H 0.10 3.27 6.71 -2.39 -0.02 3.25 16
49 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16
50 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16
51 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16
Total: -1.00 -79.34 415.89 0.51 -78.83
By element:
Atomic # 1 Polarization: 38.11 SS G_CDS: -0.52 Total: 37.59 kcal
Atomic # 6 Polarization: 1.85 SS G_CDS: 6.65 Total: 8.50 kcal
Atomic # 7 Polarization: -109.78 SS G_CDS: -7.56 Total: -117.33 kcal
Atomic # 8 Polarization: -53.43 SS G_CDS: -0.09 Total: -53.52 kcal
Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal
Total: -79.34 0.51 -78.83 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753092679.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.710 kcal
(2) G-P(sol) polarization free energy of solvation -79.339 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.629 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.512 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.827 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.116 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds