Wall clock time and date at job start Wed Apr 1 2020 04:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47224 * 2 1 4 4 C 1.37098 * 119.99636 * 85.86788 * 3 2 1 5 5 H 1.07996 * 119.99837 * 162.92535 * 4 3 2 6 6 C 1.38948 * 119.99999 * 342.92543 * 4 3 2 7 7 N 1.31411 * 120.00440 * 16.81508 * 6 4 3 8 8 Si 1.86807 * 119.99863 * 196.81480 * 6 4 3 9 9 H 1.48497 * 109.46887 * 90.00019 * 8 6 4 10 10 H 1.48496 * 109.47086 * 209.99965 * 8 6 4 11 11 H 1.48503 * 109.47089 * 330.00348 * 8 6 4 12 12 C 1.34773 * 120.00230 * 265.87269 * 3 2 1 13 13 O 1.21285 * 120.00123 * 174.53151 * 12 3 2 14 14 C 1.50698 * 119.99866 * 354.53251 * 12 3 2 15 15 H 1.09005 * 109.47673 * 24.26605 * 14 12 3 16 16 N 1.46500 * 109.47315 * 144.26768 * 14 12 3 17 17 C 1.34780 * 120.00315 * 205.00190 * 16 14 12 18 18 O 1.21583 * 119.99727 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00103 * 179.97438 * 17 16 14 20 20 C 1.46495 * 119.99829 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.47218 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00298 * 269.73365 * 21 20 19 23 23 C 1.38234 * 120.00303 * 179.76445 * 22 21 20 24 24 C 1.38235 * 119.99669 * 0.50642 * 23 22 21 25 25 C 1.38230 * 120.00269 * 359.74134 * 24 23 22 26 26 C 1.38233 * 119.99733 * 0.02562 * 25 24 23 27 27 C 1.53004 * 109.47375 * 264.26491 * 14 12 3 28 28 C 1.53000 * 109.47564 * 177.28612 * 27 14 12 29 29 C 1.53002 * 109.46824 * 57.28882 * 27 14 12 30 30 H 1.08999 * 109.46692 * 308.55301 * 1 2 3 31 31 H 1.09000 * 109.47290 * 68.56175 * 1 2 3 32 32 H 1.09007 * 109.46775 * 188.55845 * 1 2 3 33 33 H 1.09001 * 109.47230 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47348 * 120.00417 * 2 1 3 35 35 H 0.96994 * 120.00343 * 179.97438 * 7 6 4 36 36 H 0.96999 * 119.99944 * 24.99578 * 16 14 12 37 37 H 0.96997 * 119.99716 * 0.02562 * 19 17 16 38 38 H 1.08996 * 109.47486 * 300.00336 * 20 19 17 39 39 H 1.09006 * 109.46861 * 60.00476 * 20 19 17 40 40 H 1.08004 * 120.00002 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.99927 * 180.22659 * 23 22 21 42 42 H 1.08003 * 120.00159 * 179.72728 * 24 23 22 43 43 H 1.08002 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99763 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.46893 * 297.29024 * 27 14 12 46 46 H 1.09000 * 109.46874 * 300.00731 * 28 27 14 47 47 H 1.08999 * 109.46648 * 60.00105 * 28 27 14 48 48 H 1.08998 * 109.47285 * 179.97438 * 28 27 14 49 49 H 1.09003 * 109.46772 * 186.15021 * 29 27 14 50 50 H 1.09005 * 109.47133 * 306.14818 * 29 27 14 51 51 H 1.08996 * 109.47212 * 66.14750 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1662 2.0560 1.1843 5 1 2.7711 2.9497 1.2246 6 6 1.5377 1.5899 2.3325 7 7 1.0851 0.3571 2.3796 8 14 1.3361 2.7159 3.8094 9 1 0.0488 3.4482 3.7014 10 1 1.3419 1.9058 5.0539 11 1 2.4574 3.6889 3.8467 12 6 2.3222 1.9886 -1.1641 13 8 2.6312 3.1614 -1.1737 14 6 2.2781 1.2105 -2.4539 15 1 1.6021 0.3625 -2.3438 16 7 1.8000 2.0793 -3.5323 17 6 1.2048 1.5429 -4.6161 18 8 1.0650 0.3380 -4.6990 19 7 0.7645 2.3423 -5.6079 20 6 0.1180 1.7592 -6.7861 21 6 -0.2771 2.8586 -7.7380 22 6 -1.5247 3.4453 -7.6368 23 6 -1.8853 4.4572 -8.5069 24 6 -1.0022 4.8752 -9.4848 25 6 0.2434 4.2851 -9.5893 26 6 0.6058 3.2765 -8.7161 27 6 3.6815 0.7033 -2.7920 28 6 3.6250 -0.1433 -4.0651 29 6 4.2079 -0.1491 -1.6357 30 1 -0.3633 0.6405 0.8037 31 1 -0.3634 0.3756 -0.9566 32 1 -0.3633 -1.0163 0.1529 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6467 0.0317 3.1813 36 1 1.9117 3.0405 -3.4662 37 1 0.8763 3.3035 -5.5418 38 1 0.8117 1.0809 -7.2829 39 1 -0.7706 1.2084 -6.4777 40 1 -2.2165 3.1154 -6.8759 41 1 -2.8586 4.9180 -8.4255 42 1 -1.2855 5.6627 -10.1674 43 1 0.9332 4.6114 -10.3536 44 1 1.5789 2.8152 -8.7980 45 1 4.3464 1.5525 -2.9495 46 1 2.9599 -0.9924 -3.9076 47 1 3.2499 0.4640 -4.8889 48 1 4.6248 -0.5042 -4.3062 49 1 5.2463 -0.4197 -1.8272 50 1 4.1458 0.4193 -0.7076 51 1 3.6068 -1.0541 -1.5484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127940700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:47 Heat of formation + Delta-G solvation = -23.722345 kcal Electronic energy + Delta-G solvation = -31486.407671 eV Core-core repulsion = 27386.532213 eV Total energy + Delta-G solvation = -4099.875458 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.29542 -39.52531 -38.59359 -35.84705 -35.11337 -34.58296 -33.03594 -31.67941 -31.25276 -31.19264 -29.43088 -27.43608 -26.65584 -25.63081 -24.35230 -22.86408 -22.05108 -21.57424 -20.76257 -20.40360 -18.95103 -18.27209 -17.10622 -16.82620 -16.23573 -15.96697 -15.82619 -15.23910 -15.16896 -14.66883 -14.63486 -14.11789 -14.00838 -13.88806 -13.70884 -13.21151 -13.14917 -12.85046 -12.78178 -12.76385 -12.41147 -12.18254 -11.82402 -11.71025 -11.59772 -11.53984 -11.33621 -11.31303 -11.06854 -10.95306 -10.75749 -10.51521 -10.36508 -10.34831 -10.10359 -9.94153 -9.78033 -9.22357 -9.11370 -9.02732 -8.86326 -8.62354 -8.26587 -7.74408 -6.25855 -3.86957 0.94818 1.10588 2.88373 3.14607 3.24930 3.29123 3.47193 3.55099 3.83568 4.09123 4.42909 4.55435 4.58087 4.71464 4.83620 4.84323 5.06124 5.12922 5.19689 5.39430 5.44730 5.46586 5.50804 5.56114 5.73307 5.76595 5.82950 5.94951 6.08509 6.13924 6.18985 6.21020 6.22954 6.32690 6.34644 6.44544 6.47237 6.54485 6.66252 6.68539 6.70338 6.76690 6.83952 6.87786 6.92900 7.17227 7.38397 7.54170 7.67165 8.08368 8.29974 8.50264 8.88134 9.12785 9.40446 9.91841 10.62198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002550 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.324484 B =10978.471712 C =11822.688243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.105 3.895 3 N -0.432 5.432 4 C -0.302 4.302 5 H 0.101 0.899 6 C 0.033 3.967 7 N -0.869 5.869 8 Si 0.923 3.077 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.440 3.560 13 O -0.594 6.594 14 C 0.155 3.845 15 H 0.101 0.899 16 N -0.722 5.722 17 C 0.706 3.294 18 O -0.589 6.589 19 N -0.747 5.747 20 C 0.183 3.817 21 C -0.105 4.105 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.100 4.100 27 C -0.095 4.095 28 C -0.131 4.131 29 C -0.152 4.152 30 H 0.074 0.926 31 H 0.016 0.984 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.124 0.876 35 H 0.266 0.734 36 H 0.402 0.598 37 H 0.396 0.604 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.041 0.959 49 H 0.051 0.949 50 H 0.070 0.930 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 2.468 -18.993 19.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 N -0.149 5.149 4 C -0.430 4.430 5 H 0.119 0.881 6 C -0.170 4.170 7 N -0.509 5.509 8 Si 0.750 3.250 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.228 3.772 13 O -0.480 6.480 14 C 0.046 3.954 15 H 0.119 0.881 16 N -0.377 5.377 17 C 0.406 3.594 18 O -0.467 6.467 19 N -0.404 5.404 20 C 0.059 3.941 21 C -0.106 4.106 22 C -0.118 4.118 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.142 4.142 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.188 4.188 29 C -0.210 4.210 30 H 0.093 0.907 31 H 0.035 0.965 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.230 0.770 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.628 1.754 -18.856 19.119 hybrid contribution -0.217 1.371 0.763 1.584 sum -2.844 3.125 -18.093 18.580 Atomic orbital electron populations 1.22004 0.97114 1.00685 0.99512 1.21997 0.94383 0.83568 1.01880 1.43781 1.54710 1.11841 1.04574 1.19660 1.29054 1.09331 0.84914 0.88122 1.25272 0.96165 0.96189 0.99348 1.70054 1.38525 1.13425 1.28876 0.85975 0.79060 0.80028 0.79922 1.20431 1.21067 1.19492 1.19794 0.85283 0.87594 0.84567 1.90491 1.54701 1.16397 1.86415 1.20825 0.96239 0.93099 0.85240 0.88104 1.44900 1.62932 1.10877 1.18980 1.15827 0.78318 0.85390 0.79907 1.90912 1.63107 1.12462 1.80247 1.45125 1.65409 1.09740 1.20127 1.19955 0.97860 0.92659 0.83667 1.19963 0.94793 0.98444 0.97396 1.21173 0.96021 0.95851 0.98739 1.21186 0.99835 0.97404 0.95687 1.21218 0.94136 0.99687 0.98308 1.21172 0.96746 0.96828 0.99437 1.21143 0.99224 0.96781 0.94697 1.21376 0.95511 0.98533 0.96158 1.21826 1.00107 1.00099 0.96782 1.21978 1.00188 1.00119 0.98740 0.90699 0.96511 0.93980 0.94465 0.85804 0.92252 0.76307 0.77042 0.90876 0.90838 0.85698 0.85906 0.86081 0.85945 0.85772 0.91189 0.92030 0.92895 0.94015 0.92961 0.91077 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.36 37.16 0.35 -2.61 16 2 C 0.10 2.34 4.35 -4.04 -0.02 2.33 16 3 N -0.43 -10.63 1.98 -114.81 -0.23 -10.86 16 4 C -0.30 -8.06 9.36 -14.93 -0.14 -8.20 16 5 H 0.10 2.84 7.39 -52.49 -0.39 2.45 16 6 C 0.03 0.83 5.00 -17.47 -0.09 0.74 16 7 N -0.87 -21.53 7.88 55.50 0.44 -21.10 16 8 Si 0.92 20.29 29.59 -169.99 -5.03 15.26 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 C 0.44 10.40 5.62 -10.99 -0.06 10.33 16 13 O -0.59 -15.59 15.91 5.55 0.09 -15.50 16 14 C 0.15 3.04 1.79 -69.08 -0.12 2.92 16 15 H 0.10 2.10 5.42 -51.93 -0.28 1.82 16 16 N -0.72 -12.59 4.99 -59.81 -0.30 -12.89 16 17 C 0.71 11.55 7.03 -86.92 -0.61 10.94 16 18 O -0.59 -11.19 13.47 5.29 0.07 -11.12 16 19 N -0.75 -9.32 5.55 -66.42 -0.37 -9.69 16 20 C 0.18 1.99 5.80 -5.20 -0.03 1.96 16 21 C -0.11 -0.98 5.25 -104.63 -0.55 -1.53 16 22 C -0.10 -0.88 9.70 -39.58 -0.38 -1.27 16 23 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 24 C -0.12 -0.86 10.05 -39.59 -0.40 -1.26 16 25 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 26 C -0.10 -0.85 9.70 -39.58 -0.38 -1.24 16 27 C -0.10 -1.68 2.69 -90.62 -0.24 -1.92 16 28 C -0.13 -2.10 7.75 37.16 0.29 -1.81 16 29 C -0.15 -2.63 7.89 37.16 0.29 -2.34 16 30 H 0.07 1.82 6.28 -51.93 -0.33 1.50 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.04 0.76 3.85 -51.93 -0.20 0.56 16 34 H 0.12 2.98 5.84 -51.93 -0.30 2.68 16 35 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 36 H 0.40 6.78 7.96 -40.82 -0.33 6.45 16 37 H 0.40 4.29 8.48 -40.82 -0.35 3.95 16 38 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 39 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.66 8.06 -52.48 -0.42 0.23 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.06 1.05 7.70 -51.93 -0.40 0.65 16 47 H 0.05 0.88 5.70 -51.93 -0.30 0.58 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.07 1.43 6.16 -51.93 -0.32 1.11 16 51 H 0.06 0.98 6.91 -51.93 -0.36 0.62 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -29.84 399.32 -9.95 -39.80 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.75 Total: 15.76 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -2.90 Total: 4.32 kcal Atomic # 7 Polarization: -54.07 SS G_CDS: -0.46 Total: -54.53 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: 0.16 Total: -26.62 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.84 -9.95 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127940700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.074 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds