Wall clock time and date at job start Wed Apr 1 2020 04:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47224 * 2 1 4 4 C 1.37098 * 119.99636 * 85.86788 * 3 2 1 5 5 H 1.07996 * 119.99837 * 162.92535 * 4 3 2 6 6 C 1.38948 * 119.99999 * 342.92543 * 4 3 2 7 7 N 1.31411 * 120.00440 * 16.81508 * 6 4 3 8 8 Si 1.86807 * 119.99863 * 196.81480 * 6 4 3 9 9 H 1.48497 * 109.46887 * 90.00019 * 8 6 4 10 10 H 1.48496 * 109.47086 * 209.99965 * 8 6 4 11 11 H 1.48503 * 109.47089 * 330.00348 * 8 6 4 12 12 C 1.34773 * 120.00230 * 265.87269 * 3 2 1 13 13 O 1.21285 * 120.00123 * 174.53151 * 12 3 2 14 14 C 1.50698 * 119.99866 * 354.53251 * 12 3 2 15 15 H 1.09005 * 109.47673 * 24.26605 * 14 12 3 16 16 N 1.46500 * 109.47315 * 144.26768 * 14 12 3 17 17 C 1.34780 * 120.00315 * 205.00190 * 16 14 12 18 18 O 1.21583 * 119.99727 * 359.97438 * 17 16 14 19 19 N 1.34777 * 120.00103 * 179.97438 * 17 16 14 20 20 C 1.46495 * 119.99829 * 179.97438 * 19 17 16 21 21 C 1.50694 * 109.47218 * 180.02562 * 20 19 17 22 22 C 1.38237 * 120.00298 * 269.73365 * 21 20 19 23 23 C 1.38234 * 120.00303 * 179.76445 * 22 21 20 24 24 C 1.38235 * 119.99669 * 0.50642 * 23 22 21 25 25 C 1.38230 * 120.00269 * 359.74134 * 24 23 22 26 26 C 1.38233 * 119.99733 * 0.02562 * 25 24 23 27 27 C 1.53004 * 109.47375 * 264.26491 * 14 12 3 28 28 C 1.53000 * 109.47564 * 177.28612 * 27 14 12 29 29 C 1.53002 * 109.46824 * 57.28882 * 27 14 12 30 30 H 1.08999 * 109.46692 * 308.55301 * 1 2 3 31 31 H 1.09000 * 109.47290 * 68.56175 * 1 2 3 32 32 H 1.09007 * 109.46775 * 188.55845 * 1 2 3 33 33 H 1.09001 * 109.47230 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47348 * 120.00417 * 2 1 3 35 35 H 0.96994 * 120.00343 * 179.97438 * 7 6 4 36 36 H 0.96999 * 119.99944 * 24.99578 * 16 14 12 37 37 H 0.96997 * 119.99716 * 0.02562 * 19 17 16 38 38 H 1.08996 * 109.47486 * 300.00336 * 20 19 17 39 39 H 1.09006 * 109.46861 * 60.00476 * 20 19 17 40 40 H 1.08004 * 120.00002 * 359.97438 * 22 21 20 41 41 H 1.08000 * 119.99927 * 180.22659 * 23 22 21 42 42 H 1.08003 * 120.00159 * 179.72728 * 24 23 22 43 43 H 1.08002 * 120.00376 * 179.97438 * 25 24 23 44 44 H 1.08005 * 119.99763 * 179.97438 * 26 25 24 45 45 H 1.08999 * 109.46893 * 297.29024 * 27 14 12 46 46 H 1.09000 * 109.46874 * 300.00731 * 28 27 14 47 47 H 1.08999 * 109.46648 * 60.00105 * 28 27 14 48 48 H 1.08998 * 109.47285 * 179.97438 * 28 27 14 49 49 H 1.09003 * 109.46772 * 186.15021 * 29 27 14 50 50 H 1.09005 * 109.47133 * 306.14818 * 29 27 14 51 51 H 1.08996 * 109.47212 * 66.14750 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1662 2.0560 1.1843 5 1 2.7711 2.9497 1.2246 6 6 1.5377 1.5899 2.3325 7 7 1.0851 0.3571 2.3796 8 14 1.3361 2.7159 3.8094 9 1 0.0488 3.4482 3.7014 10 1 1.3419 1.9058 5.0539 11 1 2.4574 3.6889 3.8467 12 6 2.3222 1.9886 -1.1641 13 8 2.6312 3.1614 -1.1737 14 6 2.2781 1.2105 -2.4539 15 1 1.6021 0.3625 -2.3438 16 7 1.8000 2.0793 -3.5323 17 6 1.2048 1.5429 -4.6161 18 8 1.0650 0.3380 -4.6990 19 7 0.7645 2.3423 -5.6079 20 6 0.1180 1.7592 -6.7861 21 6 -0.2771 2.8586 -7.7380 22 6 -1.5247 3.4453 -7.6368 23 6 -1.8853 4.4572 -8.5069 24 6 -1.0022 4.8752 -9.4848 25 6 0.2434 4.2851 -9.5893 26 6 0.6058 3.2765 -8.7161 27 6 3.6815 0.7033 -2.7920 28 6 3.6250 -0.1433 -4.0651 29 6 4.2079 -0.1491 -1.6357 30 1 -0.3633 0.6405 0.8037 31 1 -0.3634 0.3756 -0.9566 32 1 -0.3633 -1.0163 0.1529 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.6467 0.0317 3.1813 36 1 1.9117 3.0405 -3.4662 37 1 0.8763 3.3035 -5.5418 38 1 0.8117 1.0809 -7.2829 39 1 -0.7706 1.2084 -6.4777 40 1 -2.2165 3.1154 -6.8759 41 1 -2.8586 4.9180 -8.4255 42 1 -1.2855 5.6627 -10.1674 43 1 0.9332 4.6114 -10.3536 44 1 1.5789 2.8152 -8.7980 45 1 4.3464 1.5525 -2.9495 46 1 2.9599 -0.9924 -3.9076 47 1 3.2499 0.4640 -4.8889 48 1 4.6248 -0.5042 -4.3062 49 1 5.2463 -0.4197 -1.8272 50 1 4.1458 0.4193 -0.7076 51 1 3.6068 -1.0541 -1.5484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127940700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:46 Heat of formation + Delta-G solvation = -40.834808 kcal Electronic energy + Delta-G solvation = -31487.149723 eV Core-core repulsion = 27386.532213 eV Total energy + Delta-G solvation = -4100.617510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.71368 -40.56256 -39.90619 -37.40420 -36.89271 -35.75332 -34.40587 -33.60730 -32.12128 -31.79470 -31.28754 -28.92993 -27.92824 -26.92420 -25.97996 -23.87543 -23.47305 -22.32141 -22.08222 -21.92727 -20.49903 -19.66898 -18.81389 -17.91085 -17.80869 -17.22397 -16.97893 -16.49095 -16.19912 -16.04136 -15.91472 -15.74376 -15.59940 -15.06809 -14.77855 -14.60016 -14.42098 -14.25934 -13.83958 -13.73309 -13.59345 -13.52544 -13.45337 -13.31847 -13.28258 -13.07437 -12.79608 -12.70273 -12.35942 -12.15138 -12.08234 -11.98662 -11.94232 -11.90307 -11.86168 -11.53256 -11.25598 -10.78694 -10.44369 -10.19628 -9.83662 -9.78162 -9.75101 -9.67332 -8.19695 -5.88529 0.28643 0.49404 1.35456 1.43029 1.52328 1.65410 2.01771 2.17815 2.28613 2.84830 3.02642 3.11751 3.39255 3.68216 3.83727 3.93702 3.95700 3.97728 4.15435 4.29700 4.31492 4.39711 4.40450 4.49165 4.59972 4.69718 4.72529 4.79103 4.81004 4.84640 4.88651 5.00268 5.04333 5.06569 5.08686 5.15531 5.16021 5.35898 5.40756 5.42535 5.47256 5.52451 5.55011 5.61794 5.63541 5.66199 5.74851 5.95320 6.08702 6.13744 6.55736 7.04690 7.16637 7.48144 7.58479 8.00533 8.66087 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014700 B = 0.002550 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.324484 B =10978.471712 C =11822.688243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.111 3.889 3 N -0.439 5.439 4 C -0.339 4.339 5 H 0.074 0.926 6 C 0.007 3.993 7 N -0.870 5.870 8 Si 0.980 3.020 9 H -0.279 1.279 10 H -0.271 1.271 11 H -0.275 1.275 12 C 0.435 3.565 13 O -0.628 6.628 14 C 0.168 3.832 15 H 0.091 0.909 16 N -0.724 5.724 17 C 0.706 3.294 18 O -0.614 6.614 19 N -0.732 5.732 20 C 0.186 3.814 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.128 4.128 26 C -0.107 4.107 27 C -0.091 4.091 28 C -0.117 4.117 29 C -0.147 4.147 30 H 0.049 0.951 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.272 0.728 36 H 0.404 0.596 37 H 0.405 0.595 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.125 0.875 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.131 0.869 45 H 0.065 0.935 46 H 0.052 0.948 47 H 0.046 0.954 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.038 0.962 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 2.458 -20.380 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 N -0.156 5.156 4 C -0.467 4.467 5 H 0.092 0.908 6 C -0.195 4.195 7 N -0.509 5.509 8 Si 0.805 3.195 9 H -0.205 1.205 10 H -0.195 1.195 11 H -0.200 1.200 12 C 0.224 3.776 13 O -0.516 6.516 14 C 0.059 3.941 15 H 0.109 0.891 16 N -0.379 5.379 17 C 0.406 3.594 18 O -0.495 6.495 19 N -0.388 5.388 20 C 0.063 3.937 21 C -0.115 4.115 22 C -0.130 4.130 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.111 4.111 28 C -0.175 4.175 29 C -0.205 4.205 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.240 0.760 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.143 0.857 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.057 0.943 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.902 1.734 -20.268 20.548 hybrid contribution -0.166 1.394 1.147 1.813 sum -3.068 3.129 -19.121 19.617 Atomic orbital electron populations 1.21880 0.96668 1.01318 0.98440 1.21947 0.94590 0.82578 1.02058 1.43914 1.54758 1.12509 1.04456 1.19539 1.30941 1.09640 0.86558 0.90759 1.25866 0.95343 0.97291 1.01036 1.70125 1.37503 1.13686 1.29569 0.85134 0.78432 0.78401 0.77548 1.20519 1.19538 1.20013 1.20455 0.84112 0.87468 0.85592 1.90453 1.56018 1.17982 1.87153 1.20590 0.97435 0.92192 0.83927 0.89138 1.44831 1.63443 1.10720 1.18935 1.15889 0.78113 0.85303 0.80083 1.90891 1.64138 1.13650 1.80796 1.45068 1.64229 1.09951 1.19531 1.19980 0.97254 0.93301 0.83183 1.19820 0.95427 0.98602 0.97696 1.21292 0.95989 0.96427 0.99300 1.21445 1.00790 0.97061 0.95475 1.21557 0.93850 0.99841 0.98226 1.21464 0.97292 0.96300 0.99530 1.21296 0.99429 0.97167 0.94690 1.21365 0.93903 0.98702 0.97172 1.21686 1.01283 0.99162 0.95332 1.21925 1.01986 0.99644 0.96970 0.93246 0.96467 0.91890 0.92480 0.87324 0.91708 0.76050 0.75946 0.90954 0.91641 0.85697 0.84262 0.83841 0.83929 0.85103 0.91658 0.92896 0.93482 0.91595 0.90420 0.94284 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 9.36 71.98 0.67 -4.79 16 2 C 0.11 5.00 4.35 86.38 0.38 5.37 16 3 N -0.44 -22.21 1.98 -635.55 -1.26 -23.47 16 4 C -0.34 -18.67 9.36 84.04 0.79 -17.88 16 5 H 0.07 4.40 7.39 -2.91 -0.02 4.38 16 6 C 0.01 0.37 5.00 84.93 0.42 0.80 16 7 N -0.87 -43.04 7.88 21.66 0.17 -42.87 16 8 Si 0.98 41.77 29.59 68.60 2.03 43.80 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.44 21.09 5.62 87.66 0.49 21.58 16 13 O -0.63 -34.08 15.91 -3.05 -0.05 -34.13 16 14 C 0.17 6.64 1.79 44.25 0.08 6.72 16 15 H 0.09 3.77 5.42 -2.38 -0.01 3.76 16 16 N -0.72 -25.32 4.99 -461.40 -2.30 -27.62 16 17 C 0.71 22.88 7.03 179.05 1.26 24.14 16 18 O -0.61 -23.08 13.47 -3.98 -0.05 -23.13 16 19 N -0.73 -17.86 5.55 -482.32 -2.68 -20.54 16 20 C 0.19 3.98 5.80 85.63 0.50 4.47 16 21 C -0.11 -2.05 5.25 -19.87 -0.10 -2.15 16 22 C -0.11 -1.88 9.70 22.27 0.22 -1.67 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.12 -1.47 10.05 22.27 0.22 -1.24 16 25 C -0.13 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 27 C -0.09 -3.15 2.69 -10.79 -0.03 -3.18 16 28 C -0.12 -3.58 7.75 71.98 0.56 -3.03 16 29 C -0.15 -4.99 7.89 71.98 0.57 -4.42 16 30 H 0.05 2.40 6.28 -2.39 -0.01 2.39 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 33 H 0.06 2.33 3.85 -2.39 -0.01 2.32 16 34 H 0.11 5.27 5.84 -2.39 -0.01 5.26 16 35 H 0.27 12.69 8.31 -92.71 -0.77 11.92 16 36 H 0.40 13.78 7.96 -92.71 -0.74 13.04 16 37 H 0.41 8.51 8.48 -92.71 -0.79 7.72 16 38 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 39 H 0.07 1.51 8.08 -2.38 -0.02 1.49 16 40 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 42 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.14 1.24 8.06 -2.91 -0.02 1.22 16 44 H 0.13 1.80 8.06 -2.91 -0.02 1.77 16 45 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.05 1.72 7.70 -2.39 -0.02 1.70 16 47 H 0.05 1.49 5.70 -2.39 -0.01 1.48 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.04 1.57 6.16 -2.38 -0.01 1.56 16 51 H 0.06 2.09 6.91 -2.39 -0.02 2.08 16 Total: -1.00 -64.89 399.32 1.98 -62.91 By element: Atomic # 1 Polarization: 45.41 SS G_CDS: -0.56 Total: 44.85 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.68 Total: 20.20 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -6.07 Total: -114.49 kcal Atomic # 8 Polarization: -57.16 SS G_CDS: -0.10 Total: -57.26 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -64.89 1.98 -62.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127940700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.070 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds