Wall clock time and date at job start Wed Apr 1 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.46912 * 2 1 4 4 C 1.34778 * 120.00404 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99474 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00602 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47282 * 175.02442 * 6 4 3 8 8 C 1.46898 * 111.00231 * 289.26772 * 7 6 4 9 9 C 1.52994 * 109.47370 * 295.66431 * 8 7 6 10 10 C 1.46908 * 111.00029 * 165.31227 * 7 6 4 11 11 C 1.50695 * 109.47075 * 189.99947 * 10 7 6 12 12 O 1.21287 * 120.00344 * 5.25317 * 11 10 7 13 13 N 1.34783 * 119.99850 * 185.24751 * 11 10 7 14 14 C 1.46496 * 119.99949 * 184.73409 * 13 11 10 15 15 C 1.50706 * 109.47039 * 269.99984 * 14 13 11 16 16 H 1.08003 * 119.99816 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47380 * 119.99864 * 19 17 15 22 22 H 1.48507 * 109.47015 * 239.99715 * 19 17 15 23 23 C 1.39928 * 119.99703 * 4.73534 * 13 11 10 24 24 C 1.38869 * 120.06867 * 68.17324 * 23 13 11 25 25 C 1.38120 * 119.92476 * 179.97438 * 24 23 13 26 26 C 1.38283 * 120.06979 * 359.97438 * 25 24 23 27 27 C 1.38280 * 120.14107 * 0.04609 * 26 25 24 28 28 C 1.38107 * 120.07508 * 359.95512 * 27 26 25 29 29 H 1.09004 * 109.46953 * 299.99230 * 1 2 3 30 30 H 1.08996 * 109.47498 * 60.00200 * 1 2 3 31 31 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00392 * 2 1 3 33 33 H 1.08998 * 109.47385 * 120.00327 * 2 1 3 34 34 H 0.97006 * 120.00505 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.46975 * 55.02365 * 6 4 3 36 36 H 1.09001 * 109.46985 * 295.02690 * 6 4 3 37 37 H 1.09004 * 109.46732 * 55.66972 * 8 7 6 38 38 H 1.08998 * 109.47233 * 175.65819 * 8 7 6 39 39 H 1.09003 * 109.47078 * 299.25018 * 9 8 7 40 40 H 1.08997 * 109.47287 * 59.25076 * 9 8 7 41 41 H 1.09002 * 109.46977 * 179.25156 * 9 8 7 42 42 H 1.09005 * 109.46796 * 70.00370 * 10 7 6 43 43 H 1.08994 * 109.47133 * 310.00764 * 10 7 6 44 44 H 1.09002 * 109.47085 * 30.00148 * 14 13 11 45 45 H 1.09004 * 109.47082 * 150.00409 * 14 13 11 46 46 H 0.97005 * 119.99638 * 179.97438 * 18 17 15 47 47 H 1.07992 * 120.04097 * 359.69764 * 24 23 13 48 48 H 1.07991 * 119.96229 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.92839 * 180.02562 * 26 25 24 50 50 H 1.08006 * 119.96150 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.03781 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8456 3.0484 0.0001 7 7 5.3097 3.0501 0.1194 8 6 5.7287 2.6350 1.4648 9 6 5.2422 3.6613 2.4899 10 6 5.8642 4.3670 -0.2218 11 6 7.3642 4.2683 -0.3279 12 8 7.9092 3.1890 -0.2325 13 7 8.1001 5.3794 -0.5290 14 6 9.5465 5.2725 -0.7357 15 6 10.2511 5.3511 0.5942 16 1 9.6788 5.4693 1.5024 17 6 11.6265 5.2732 0.6513 18 7 12.3234 5.1298 -0.4548 19 14 12.4998 5.3699 2.2996 20 1 11.4965 5.5294 3.3828 21 1 13.2758 4.1236 2.5226 22 1 13.4215 6.5343 2.3039 23 6 7.4826 6.6350 -0.5402 24 6 6.9438 7.1559 0.6289 25 6 6.3354 8.3958 0.6145 26 6 6.2629 9.1184 -0.5623 27 6 6.7981 8.6022 -1.7282 28 6 7.4078 7.3630 -1.7205 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3879 2.1185 -0.0004 35 1 3.4117 3.5868 0.8426 36 1 3.5564 3.5364 -0.9307 37 1 5.2989 1.6600 1.6945 38 1 6.8161 2.5706 1.5030 39 1 5.6826 4.6334 2.2679 40 1 4.1558 3.7353 2.4425 41 1 5.5417 3.3464 3.4895 42 1 5.6014 5.0844 0.5557 43 1 5.4534 4.6981 -1.1755 44 1 9.7759 4.3197 -1.2127 45 1 9.8836 6.0891 -1.3742 46 1 13.2911 5.0753 -0.4146 47 1 6.9965 6.5903 1.5474 48 1 5.9159 8.8013 1.5232 49 1 5.7870 10.0878 -0.5708 50 1 6.7395 9.1689 -2.6457 51 1 7.8259 6.9606 -2.6313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198399637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:48 Heat of formation + Delta-G solvation = -22.726332 kcal Electronic energy + Delta-G solvation = -31387.842445 eV Core-core repulsion = 27288.010178 eV Total energy + Delta-G solvation = -4099.832268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.26705 -39.66682 -38.30469 -36.86140 -35.29982 -34.70557 -32.67638 -31.28475 -30.75152 -30.34363 -29.44000 -28.85719 -26.97972 -25.39359 -23.31995 -22.97073 -22.47665 -22.14698 -21.29738 -20.11719 -18.88223 -17.26610 -16.78197 -16.55495 -16.36408 -16.25840 -15.92718 -15.63651 -15.47363 -15.03838 -14.70832 -14.31893 -14.20338 -13.91989 -13.73865 -13.69594 -13.19368 -13.17182 -12.95462 -12.67550 -12.49096 -12.40053 -12.23240 -12.16186 -12.13270 -11.77889 -11.67987 -11.47226 -11.37626 -11.16070 -10.98489 -10.82877 -10.63345 -10.50168 -10.14170 -9.85014 -9.67028 -9.23705 -9.16232 -8.72940 -8.58130 -8.42114 -8.08253 -7.62071 -6.03620 -4.07563 1.54285 1.61279 2.64155 2.88242 3.31152 3.33681 3.38985 3.42921 3.65966 3.99916 4.20442 4.46214 4.57649 4.75002 4.79247 4.93092 4.99666 5.02666 5.10692 5.14151 5.15125 5.28003 5.31512 5.33838 5.39573 5.44791 5.48531 5.53039 5.58469 5.59161 5.65868 5.70221 5.79089 5.96411 6.03725 6.16759 6.23345 6.26526 6.53598 6.57638 6.70011 6.79585 6.90385 7.05969 7.10993 7.19721 7.38888 7.40499 7.52069 7.92127 8.21180 8.22262 8.39264 8.89751 9.05912 9.56761 11.04817 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.003114 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.545718 B = 8990.654895 C =10575.123513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 N -0.740 5.740 4 C 0.511 3.489 5 O -0.509 6.509 6 C 0.032 3.968 7 N -0.497 5.497 8 C 0.043 3.957 9 C -0.194 4.194 10 C 0.032 3.968 11 C 0.514 3.486 12 O -0.500 6.500 13 N -0.566 5.566 14 C 0.250 3.750 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.284 1.284 23 C 0.167 3.833 24 C -0.126 4.126 25 C -0.111 4.111 26 C -0.136 4.136 27 C -0.109 4.109 28 C -0.126 4.126 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.102 0.898 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.063 0.937 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.047 0.953 45 H 0.034 0.966 46 H 0.263 0.737 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.121 0.879 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.330 2.574 0.490 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.008 4.008 3 N -0.396 5.396 4 C 0.296 3.704 5 O -0.382 6.382 6 C -0.100 4.100 7 N -0.220 5.220 8 C -0.085 4.085 9 C -0.253 4.253 10 C -0.099 4.099 11 C 0.300 3.700 12 O -0.373 6.373 13 N -0.296 5.296 14 C 0.132 3.868 15 C -0.560 4.560 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.210 1.210 23 C 0.074 3.926 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.231 0.769 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.115 0.885 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -24.002 0.843 0.123 24.017 hybrid contribution 0.000 1.212 1.456 1.894 sum -24.002 2.055 1.579 24.142 Atomic orbital electron populations 1.21999 0.94599 1.03153 1.02406 1.21245 0.93965 0.83208 1.02426 1.46064 1.07199 1.08696 1.77596 1.20618 0.81828 0.91739 0.76175 1.90750 1.54885 1.45959 1.46600 1.22002 0.90673 0.94040 1.03249 1.61511 1.05801 1.26067 1.28663 1.22390 1.03780 0.97877 0.84420 1.22486 1.00553 1.01162 1.01108 1.22148 0.94472 0.90810 1.02420 1.20110 0.88130 0.84172 0.77554 1.90701 1.72841 1.26898 1.46900 1.46006 1.10447 1.02580 1.70552 1.19408 0.71204 0.98677 0.97467 1.21376 0.91474 1.50204 0.92942 0.92449 1.24909 0.97302 0.95074 0.96761 1.69939 1.06760 1.49967 1.26668 0.86444 0.79540 0.77613 0.83844 1.19821 1.20831 1.20995 1.17759 0.94609 0.87496 0.92698 1.21361 0.99772 0.96166 0.97274 1.20959 0.99609 0.94391 0.97973 1.21045 1.01483 0.99827 0.93045 1.20972 0.98304 0.95284 0.98212 1.21354 0.99993 0.95506 0.97684 0.92066 0.91998 0.90887 0.91558 0.91655 0.76885 0.91602 0.87985 0.90017 0.88158 0.92391 0.93168 0.91753 0.91535 0.88533 0.93487 0.94792 0.92754 0.86152 0.86254 0.86441 0.86121 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 10.03 37.16 0.37 -0.40 16 2 C 0.12 0.92 6.39 -4.05 -0.03 0.89 16 3 N -0.74 -6.23 5.56 -60.30 -0.33 -6.57 16 4 C 0.51 6.41 7.43 -10.99 -0.08 6.33 16 5 O -0.51 -8.96 14.99 5.55 0.08 -8.88 16 6 C 0.03 0.35 5.33 -4.98 -0.03 0.33 16 7 N -0.50 -7.83 4.03 -237.52 -0.96 -8.79 16 8 C 0.04 0.70 5.41 -3.83 -0.02 0.68 16 9 C -0.19 -2.50 9.26 37.15 0.34 -2.15 16 10 C 0.03 0.51 4.09 -4.97 -0.02 0.49 16 11 C 0.51 10.85 7.17 -10.99 -0.08 10.77 16 12 O -0.50 -12.81 14.20 5.55 0.08 -12.73 16 13 N -0.57 -12.17 2.50 -114.73 -0.29 -12.46 16 14 C 0.25 6.60 5.08 -5.19 -0.03 6.57 16 15 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 16 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 17 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 18 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 19 Si 0.90 22.25 29.54 -169.99 -5.02 17.23 16 20 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 23 C 0.17 2.96 4.44 -83.69 -0.37 2.59 16 24 C -0.13 -1.97 8.27 -39.39 -0.33 -2.29 16 25 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 26 C -0.14 -1.59 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.38 10.04 -39.61 -0.40 -1.77 16 28 C -0.13 -1.96 9.70 -39.39 -0.38 -2.34 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 2.04 8.47 -40.82 -0.35 1.70 16 35 H 0.07 0.58 5.97 -51.93 -0.31 0.27 16 36 H 0.10 0.91 7.83 -51.93 -0.41 0.51 16 37 H 0.08 1.37 6.42 -51.93 -0.33 1.04 16 38 H 0.10 2.03 6.08 -51.93 -0.32 1.71 16 39 H 0.06 0.77 6.31 -51.93 -0.33 0.44 16 40 H 0.05 0.53 6.27 -51.93 -0.33 0.20 16 41 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.93 4.37 -51.93 -0.23 0.70 16 43 H 0.10 1.32 7.87 -51.93 -0.41 0.92 16 44 H 0.05 1.39 7.49 -51.93 -0.39 1.00 16 45 H 0.03 0.91 7.87 -51.93 -0.41 0.51 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.12 1.91 7.97 -52.49 -0.42 1.49 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 51 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 413.11 15.07 6.23 6.23 Total: -1.00 -36.55 413.11 -9.72 -46.27 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.99 Total: 3.44 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: -2.26 Total: 2.37 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: -0.84 Total: -53.92 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.16 Total: -21.61 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -36.55 -9.72 -46.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198399637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.545 kcal (2) G-P(sol) polarization free energy of solvation -36.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds