Wall clock time and date at job start Wed Apr 1 2020 04:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46495 * 109.46912 * 2 1 4 4 C 1.34778 * 120.00404 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99474 * 359.97438 * 4 3 2 6 6 C 1.50695 * 120.00602 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.47282 * 175.02442 * 6 4 3 8 8 C 1.46898 * 111.00231 * 289.26772 * 7 6 4 9 9 C 1.52994 * 109.47370 * 295.66431 * 8 7 6 10 10 C 1.46908 * 111.00029 * 165.31227 * 7 6 4 11 11 C 1.50695 * 109.47075 * 189.99947 * 10 7 6 12 12 O 1.21287 * 120.00344 * 5.25317 * 11 10 7 13 13 N 1.34783 * 119.99850 * 185.24751 * 11 10 7 14 14 C 1.46496 * 119.99949 * 184.73409 * 13 11 10 15 15 C 1.50706 * 109.47039 * 269.99984 * 14 13 11 16 16 H 1.08003 * 119.99816 * 359.97438 * 15 14 13 17 17 C 1.37873 * 119.99994 * 180.02562 * 15 14 13 18 18 N 1.31518 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99960 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47166 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47380 * 119.99864 * 19 17 15 22 22 H 1.48507 * 109.47015 * 239.99715 * 19 17 15 23 23 C 1.39928 * 119.99703 * 4.73534 * 13 11 10 24 24 C 1.38869 * 120.06867 * 68.17324 * 23 13 11 25 25 C 1.38120 * 119.92476 * 179.97438 * 24 23 13 26 26 C 1.38283 * 120.06979 * 359.97438 * 25 24 23 27 27 C 1.38280 * 120.14107 * 0.04609 * 26 25 24 28 28 C 1.38107 * 120.07508 * 359.95512 * 27 26 25 29 29 H 1.09004 * 109.46953 * 299.99230 * 1 2 3 30 30 H 1.08996 * 109.47498 * 60.00200 * 1 2 3 31 31 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47123 * 240.00392 * 2 1 3 33 33 H 1.08998 * 109.47385 * 120.00327 * 2 1 3 34 34 H 0.97006 * 120.00505 * 359.97438 * 3 2 1 35 35 H 1.08999 * 109.46975 * 55.02365 * 6 4 3 36 36 H 1.09001 * 109.46985 * 295.02690 * 6 4 3 37 37 H 1.09004 * 109.46732 * 55.66972 * 8 7 6 38 38 H 1.08998 * 109.47233 * 175.65819 * 8 7 6 39 39 H 1.09003 * 109.47078 * 299.25018 * 9 8 7 40 40 H 1.08997 * 109.47287 * 59.25076 * 9 8 7 41 41 H 1.09002 * 109.46977 * 179.25156 * 9 8 7 42 42 H 1.09005 * 109.46796 * 70.00370 * 10 7 6 43 43 H 1.08994 * 109.47133 * 310.00764 * 10 7 6 44 44 H 1.09002 * 109.47085 * 30.00148 * 14 13 11 45 45 H 1.09004 * 109.47082 * 150.00409 * 14 13 11 46 46 H 0.97005 * 119.99638 * 179.97438 * 18 17 15 47 47 H 1.07992 * 120.04097 * 359.69764 * 24 23 13 48 48 H 1.07991 * 119.96229 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.92839 * 180.02562 * 26 25 24 50 50 H 1.08006 * 119.96150 * 179.97438 * 27 26 25 51 51 H 1.07999 * 120.03781 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6276 -0.0005 5 8 4.1314 0.7058 -0.0005 6 6 3.8456 3.0484 0.0001 7 7 5.3097 3.0501 0.1194 8 6 5.7287 2.6350 1.4648 9 6 5.2422 3.6613 2.4899 10 6 5.8642 4.3670 -0.2218 11 6 7.3642 4.2683 -0.3279 12 8 7.9092 3.1890 -0.2325 13 7 8.1001 5.3794 -0.5290 14 6 9.5465 5.2725 -0.7357 15 6 10.2511 5.3511 0.5942 16 1 9.6788 5.4693 1.5024 17 6 11.6265 5.2732 0.6513 18 7 12.3234 5.1298 -0.4548 19 14 12.4998 5.3699 2.2996 20 1 11.4965 5.5294 3.3828 21 1 13.2758 4.1236 2.5226 22 1 13.4215 6.5343 2.3039 23 6 7.4826 6.6350 -0.5402 24 6 6.9438 7.1559 0.6289 25 6 6.3354 8.3958 0.6145 26 6 6.2629 9.1184 -0.5623 27 6 6.7981 8.6022 -1.7282 28 6 7.4078 7.3630 -1.7205 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.3879 2.1185 -0.0004 35 1 3.4117 3.5868 0.8426 36 1 3.5564 3.5364 -0.9307 37 1 5.2989 1.6600 1.6945 38 1 6.8161 2.5706 1.5030 39 1 5.6826 4.6334 2.2679 40 1 4.1558 3.7353 2.4425 41 1 5.5417 3.3464 3.4895 42 1 5.6014 5.0844 0.5557 43 1 5.4534 4.6981 -1.1755 44 1 9.7759 4.3197 -1.2127 45 1 9.8836 6.0891 -1.3742 46 1 13.2911 5.0753 -0.4146 47 1 6.9965 6.5903 1.5474 48 1 5.9159 8.8013 1.5232 49 1 5.7870 10.0878 -0.5708 50 1 6.7395 9.1689 -2.6457 51 1 7.8259 6.9606 -2.6313 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198399637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:47 Heat of formation + Delta-G solvation = -49.268064 kcal Electronic energy + Delta-G solvation = -31388.993381 eV Core-core repulsion = 27288.010178 eV Total energy + Delta-G solvation = -4100.983204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.61225 -40.77837 -39.55699 -38.11368 -36.40153 -36.14898 -34.79223 -32.10418 -31.87198 -31.48996 -30.87515 -30.00421 -28.63578 -26.65490 -24.93162 -23.99651 -23.66240 -23.30131 -22.44280 -21.16069 -20.27984 -18.74133 -18.45792 -17.90166 -17.62625 -17.30715 -17.00927 -16.96280 -16.70487 -16.25127 -16.04254 -15.81421 -15.42805 -15.11993 -14.85645 -14.79526 -14.51044 -14.34860 -14.25990 -14.08592 -13.65952 -13.54584 -13.37699 -13.27596 -13.13872 -12.99518 -12.90987 -12.70106 -12.66544 -12.51137 -12.43684 -12.31587 -12.11296 -12.09504 -11.77008 -11.64338 -11.01246 -10.70267 -10.65693 -10.05941 -10.04632 -9.80116 -9.33838 -9.07585 -8.25545 -6.39948 0.40296 0.53873 1.31688 1.34830 1.46110 1.69112 1.74539 1.93801 2.28282 2.39497 2.89861 3.02802 3.04124 3.61862 3.83877 4.00582 4.06017 4.11497 4.16599 4.17926 4.23307 4.26201 4.28624 4.35656 4.39733 4.42495 4.48776 4.54139 4.64055 4.68988 4.77857 4.90479 4.97132 5.00862 5.05561 5.07888 5.11168 5.18986 5.26142 5.28203 5.45131 5.52748 5.57740 5.66613 5.69166 5.80238 5.87546 5.97928 6.00872 6.12178 6.65810 6.66448 6.78612 7.24859 7.36915 7.44283 8.81793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010467 B = 0.003114 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.545718 B = 8990.654895 C =10575.123513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.718 5.718 4 C 0.507 3.493 5 O -0.572 6.572 6 C 0.034 3.966 7 N -0.529 5.529 8 C 0.051 3.949 9 C -0.183 4.183 10 C 0.055 3.945 11 C 0.503 3.497 12 O -0.563 6.563 13 N -0.567 5.567 14 C 0.269 3.731 15 C -0.534 4.534 16 H 0.050 0.950 17 C 0.007 3.993 18 N -0.928 5.928 19 Si 0.967 3.033 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.267 1.267 23 C 0.126 3.874 24 C -0.136 4.136 25 C -0.101 4.101 26 C -0.118 4.118 27 C -0.102 4.102 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.418 0.582 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.070 0.930 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.121 0.879 44 H -0.001 1.001 45 H 0.021 0.979 46 H 0.267 0.733 47 H 0.110 0.890 48 H 0.154 0.846 49 H 0.160 0.840 50 H 0.152 0.848 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.219 6.326 1.745 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.374 5.374 4 C 0.293 3.707 5 O -0.450 6.450 6 C -0.096 4.096 7 N -0.252 5.252 8 C -0.077 4.077 9 C -0.241 4.241 10 C -0.075 4.075 11 C 0.292 3.708 12 O -0.440 6.440 13 N -0.296 5.296 14 C 0.148 3.852 15 C -0.573 4.573 16 H 0.068 0.932 17 C -0.192 4.192 18 N -0.568 5.568 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.192 1.192 23 C 0.036 3.964 24 C -0.156 4.156 25 C -0.119 4.119 26 C -0.136 4.136 27 C -0.120 4.120 28 C -0.161 4.161 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.255 0.745 35 H 0.119 0.881 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.017 0.983 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.128 0.872 48 H 0.171 0.829 49 H 0.178 0.822 50 H 0.169 0.831 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -27.995 4.669 1.372 28.414 hybrid contribution 1.129 0.094 0.984 1.500 sum -26.866 4.764 2.356 27.386 Atomic orbital electron populations 1.21935 0.91466 1.04088 1.03516 1.21319 0.96392 0.82641 1.00935 1.45908 1.06237 1.09738 1.75491 1.20983 0.82595 0.91766 0.75307 1.90738 1.56709 1.47729 1.49834 1.22144 0.87590 0.93661 1.06172 1.61300 1.09054 1.26357 1.28538 1.22098 1.00542 0.98761 0.86327 1.22377 1.02492 0.99439 0.99836 1.21975 0.89775 0.91404 1.04385 1.21235 0.90643 0.83016 0.75888 1.90666 1.74495 1.29146 1.49714 1.45813 1.08617 1.04900 1.70261 1.18772 0.74930 0.95374 0.96082 1.21596 0.92087 1.50289 0.93318 0.93165 1.25850 0.98113 0.94479 1.00739 1.70059 1.07219 1.50582 1.28940 0.85376 0.78395 0.78020 0.79099 1.19099 1.20705 1.19200 1.18025 0.97181 0.86519 0.94715 1.21358 1.00678 0.97622 0.95893 1.21329 0.98059 0.92654 0.99849 1.21546 0.99419 1.00855 0.91788 1.21326 0.96708 0.93770 1.00196 1.21401 1.01137 0.96925 0.96589 0.90829 0.90879 0.90128 0.93295 0.93153 0.74472 0.88062 0.85017 0.91182 0.93429 0.92775 0.89766 0.91503 0.89138 0.86112 0.98332 0.96136 0.92373 0.87211 0.82863 0.82245 0.83068 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.03 71.98 0.72 -0.34 16 2 C 0.11 1.69 6.39 86.38 0.55 2.24 16 3 N -0.72 -10.78 5.56 -463.08 -2.57 -13.36 16 4 C 0.51 12.38 7.43 87.66 0.65 13.03 16 5 O -0.57 -21.13 14.99 -3.04 -0.05 -21.18 16 6 C 0.03 0.69 5.33 85.56 0.46 1.15 16 7 N -0.53 -16.84 4.03 -905.39 -3.65 -20.49 16 8 C 0.05 1.73 5.41 86.30 0.47 2.20 16 9 C -0.18 -4.50 9.26 71.98 0.67 -3.83 16 10 C 0.05 1.71 4.09 85.55 0.35 2.06 16 11 C 0.50 22.73 7.17 87.65 0.63 23.36 16 12 O -0.56 -31.72 14.20 -3.05 -0.04 -31.76 16 13 N -0.57 -26.01 2.50 -635.29 -1.59 -27.60 16 14 C 0.27 15.35 5.08 85.64 0.43 15.78 16 15 C -0.53 -32.25 9.39 25.60 0.24 -32.01 16 16 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.01 0.42 5.46 84.65 0.46 0.88 16 18 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 19 Si 0.97 46.77 29.54 68.60 2.03 48.80 16 20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.13 4.52 4.44 38.15 0.17 4.69 16 24 C -0.14 -4.04 8.27 22.39 0.19 -3.85 16 25 C -0.10 -2.10 10.04 22.25 0.22 -1.87 16 26 C -0.12 -2.13 10.04 22.29 0.22 -1.91 16 27 C -0.10 -2.20 10.04 22.25 0.22 -1.98 16 28 C -0.14 -4.32 9.70 22.39 0.22 -4.11 16 29 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 30 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.42 2.83 8.47 -92.70 -0.79 2.05 16 35 H 0.10 1.34 5.97 -2.39 -0.01 1.32 16 36 H 0.13 1.87 7.83 -2.39 -0.02 1.85 16 37 H 0.07 2.51 6.42 -2.38 -0.02 2.50 16 38 H 0.05 2.12 6.08 -2.39 -0.01 2.11 16 39 H 0.05 1.37 6.31 -2.39 -0.02 1.36 16 40 H 0.08 1.47 6.27 -2.39 -0.01 1.46 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.09 2.38 4.37 -2.38 -0.01 2.37 16 43 H 0.12 3.15 7.87 -2.39 -0.02 3.13 16 44 H 0.00 -0.09 7.49 -2.39 -0.02 -0.11 16 45 H 0.02 1.20 7.87 -2.38 -0.02 1.18 16 46 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 47 H 0.11 3.43 7.97 -2.91 -0.02 3.41 16 48 H 0.15 2.19 8.06 -2.92 -0.02 2.16 16 49 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 50 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 51 H 0.11 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -90.64 413.11 1.43 -89.21 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.15 Total: 18.74 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.87 Total: 15.49 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -7.53 Total: -119.30 kcal Atomic # 8 Polarization: -52.85 SS G_CDS: -0.09 Total: -52.94 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -90.64 1.43 -89.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198399637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.946 kcal (2) G-P(sol) polarization free energy of solvation -90.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds