Wall clock time and date at job start Wed Apr 1 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21276 * 120.00391 * 2 1 4 4 N 1.34782 * 119.99685 * 180.02562 * 2 1 3 5 5 C 1.46503 * 119.99475 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.46627 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.46867 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46867 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46867 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47332 * 180.02562 * 9 8 7 11 11 O 1.21287 * 119.99499 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00377 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99928 * 359.97438 * 12 10 9 14 14 C 1.50698 * 109.46886 * 270.00390 * 13 12 10 15 15 H 1.07994 * 120.00600 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99702 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00197 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 120.00061 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46778 * 89.99805 * 18 16 14 20 20 H 1.48499 * 109.47209 * 209.99860 * 18 16 14 21 21 H 1.48496 * 109.46893 * 329.99803 * 18 16 14 22 22 C 1.46504 * 119.99689 * 179.97438 * 12 10 9 23 23 C 1.50707 * 109.46935 * 90.00167 * 22 12 10 24 24 C 1.38227 * 119.62059 * 95.01845 * 23 22 12 25 25 C 1.38627 * 119.15702 * 179.74122 * 24 23 22 26 26 C 1.38669 * 118.42389 * 0.47826 * 25 24 23 27 27 C 1.38186 * 119.16143 * 359.49762 * 26 25 24 28 28 N 1.31856 * 119.61137 * 274.99275 * 23 22 12 29 29 H 1.08999 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46805 * 300.00136 * 1 2 3 31 31 H 1.08996 * 109.47145 * 59.99952 * 1 2 3 32 32 H 0.96994 * 120.00383 * 0.02562 * 4 2 1 33 33 H 1.08990 * 109.47137 * 60.00678 * 5 4 2 34 34 H 1.09001 * 109.47446 * 299.99627 * 5 4 2 35 35 H 1.09005 * 109.47287 * 60.00052 * 6 5 4 36 36 H 1.09000 * 109.47519 * 300.00134 * 6 5 4 37 37 H 1.08996 * 109.47417 * 59.99792 * 7 6 5 38 38 H 1.09001 * 109.47245 * 299.99536 * 7 6 5 39 39 H 1.09000 * 109.47425 * 60.00432 * 8 7 6 40 40 H 1.09001 * 109.46809 * 299.99803 * 8 7 6 41 41 H 1.08996 * 109.47417 * 59.99792 * 9 8 7 42 42 H 1.09001 * 109.47245 * 299.99536 * 9 8 7 43 43 H 1.08998 * 109.47243 * 30.00215 * 13 12 10 44 44 H 1.08997 * 109.46980 * 150.00484 * 13 12 10 45 45 H 0.96992 * 120.00111 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.47679 * 329.99634 * 22 12 10 47 47 H 1.09003 * 109.46652 * 209.99594 * 22 12 10 48 48 H 1.07998 * 120.41916 * 359.95342 * 24 23 22 49 49 H 1.08008 * 120.78688 * 180.22921 * 25 24 23 50 50 H 1.08002 * 120.42244 * 179.78279 * 26 25 24 51 51 H 1.07996 * 119.61757 * 180.25243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1559 -2.6098 -0.0023 7 6 5.6859 -2.6098 -0.0022 8 6 6.1958 -4.0524 -0.0027 9 6 7.7258 -4.0524 -0.0033 10 6 8.2282 -5.4732 -0.0045 11 8 7.4399 -6.3950 -0.0043 12 7 9.5532 -5.7195 -0.0046 13 6 10.5052 -4.6060 -0.0042 14 6 10.8315 -4.2236 -1.4249 15 1 10.3757 -4.7569 -2.2460 16 6 11.7120 -3.1928 -1.6765 17 7 11.9972 -2.8594 -2.9163 18 14 12.5010 -2.2708 -0.2563 19 1 13.7745 -2.9360 0.1191 20 1 12.7763 -0.8706 -0.6672 21 1 11.5794 -2.2729 0.9080 22 6 10.0415 -7.1008 -0.0052 23 6 10.2088 -7.5738 -1.4262 24 6 11.4463 -7.4828 -2.0353 25 6 11.5907 -7.9258 -3.3410 26 6 10.4777 -8.4367 -3.9915 27 6 9.2726 -8.4967 -3.3179 28 7 9.1731 -8.0702 -2.0739 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6959 -2.0073 -0.0013 33 1 4.0095 -0.6537 0.8888 34 1 4.0089 -0.6532 -0.8911 35 1 3.7922 -3.1231 -0.8925 36 1 3.7929 -3.1243 0.8875 37 1 6.0492 -2.0967 0.8881 38 1 6.0492 -2.0953 -0.8918 39 1 5.8326 -4.5659 -0.8929 40 1 5.8324 -4.5665 0.8871 41 1 8.0895 -3.5387 0.8866 42 1 8.0888 -3.5384 -0.8934 43 1 10.0650 -3.7517 0.5100 44 1 11.4178 -4.9084 0.5093 45 1 12.6163 -2.1340 -3.0933 46 1 9.3236 -7.7402 0.5085 47 1 11.0017 -7.1468 0.5086 48 1 12.2908 -7.0750 -1.4997 49 1 12.5464 -7.8704 -3.8410 50 1 10.5529 -8.7876 -5.0101 51 1 8.4021 -8.8971 -3.8161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264132958.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:09 Heat of formation + Delta-G solvation = -58.243773 kcal Electronic energy + Delta-G solvation = -29946.088666 eV Core-core repulsion = 25844.716246 eV Total energy + Delta-G solvation = -4101.372420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.85912 -39.75354 -38.85202 -36.40568 -35.20264 -34.26917 -32.73492 -31.95660 -31.65868 -31.09173 -29.65452 -28.18399 -26.87973 -25.31814 -23.02529 -22.71182 -22.21265 -21.54758 -21.12219 -20.42937 -18.25565 -17.15940 -16.97475 -16.52877 -16.28402 -16.19722 -16.07219 -15.65458 -15.42829 -15.27823 -15.08251 -14.48153 -14.16707 -13.80026 -13.52034 -13.39706 -13.06212 -12.94643 -12.87481 -12.77304 -12.65967 -12.43125 -12.37148 -12.03224 -11.85822 -11.80324 -11.62635 -11.29935 -11.01529 -10.97758 -10.91909 -10.86677 -10.57909 -10.33431 -10.26694 -10.09058 -9.65676 -9.34297 -9.30058 -9.04993 -8.91355 -8.75180 -8.44418 -7.75704 -6.22600 -4.23704 1.58878 1.83943 2.41814 3.01019 3.14383 3.22504 3.25069 3.42504 3.83750 4.24171 4.45329 4.54904 4.70927 4.79570 4.85884 4.86331 5.06380 5.07415 5.07995 5.21060 5.27416 5.33140 5.36945 5.45038 5.50200 5.53681 5.63224 5.69581 5.73396 5.81043 5.88713 5.94564 6.02164 6.04335 6.13048 6.19317 6.21690 6.25671 6.29621 6.41396 6.54811 6.61910 6.64596 6.66925 6.69694 7.19793 7.26059 7.32134 7.42526 7.99198 8.13658 8.40301 8.56946 8.84437 9.00633 9.36894 10.89796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009677 B = 0.002397 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.770731 B =11679.842949 C =13384.545668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.550 6.550 4 N -0.731 5.731 5 C 0.114 3.886 6 C -0.129 4.129 7 C -0.118 4.118 8 C -0.098 4.098 9 C -0.138 4.138 10 C 0.519 3.481 11 O -0.551 6.551 12 N -0.591 5.591 13 C 0.207 3.793 14 C -0.533 4.533 15 H 0.077 0.923 16 C 0.077 3.923 17 N -0.890 5.890 18 Si 0.868 3.132 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.264 1.264 22 C 0.172 3.828 23 C 0.121 3.879 24 C -0.128 4.128 25 C -0.079 4.079 26 C -0.179 4.179 27 C 0.086 3.914 28 N -0.461 5.461 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.401 0.599 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.027 0.973 45 H 0.265 0.735 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.133 0.867 49 H 0.128 0.872 50 H 0.125 0.875 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 -3.905 4.891 13.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.293 3.707 3 O -0.427 6.427 4 N -0.383 5.383 5 C -0.009 4.009 6 C -0.167 4.167 7 C -0.156 4.156 8 C -0.136 4.136 9 C -0.177 4.177 10 C 0.308 3.692 11 O -0.430 6.430 12 N -0.322 5.322 13 C 0.085 3.915 14 C -0.572 4.572 15 H 0.095 0.905 16 C -0.127 4.127 17 N -0.528 5.528 18 Si 0.695 3.305 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.188 1.188 22 C 0.048 3.952 23 C -0.019 4.019 24 C -0.148 4.148 25 C -0.105 4.105 26 C -0.199 4.199 27 C -0.072 4.072 28 N -0.170 5.170 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.075 0.925 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.151 0.849 49 H 0.146 0.854 50 H 0.143 0.857 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.041 -3.526 5.229 14.486 hybrid contribution 1.435 0.426 -0.201 1.510 sum -11.606 -3.100 5.028 13.023 Atomic orbital electron populations 1.21849 0.91797 1.04151 1.05259 1.20837 0.90629 0.83572 0.75664 1.90738 1.70816 1.31478 1.49690 1.46206 1.07916 1.08704 1.75475 1.21468 0.79021 0.97821 1.02610 1.21793 0.97115 0.94959 1.02805 1.21529 0.93454 0.97819 1.02801 1.21287 0.94077 0.95289 1.02973 1.21655 0.96190 0.94896 1.04984 1.20524 0.81915 0.91320 0.75428 1.90634 1.55076 1.46543 1.50743 1.47902 1.06273 1.06033 1.72041 1.19866 0.88236 0.84862 0.98498 1.21345 1.27018 1.17626 0.91165 0.90457 1.24870 0.95991 0.96499 0.95302 1.69893 1.34839 1.29391 1.18635 0.86978 0.80412 0.79903 0.83213 1.20063 1.20984 1.18838 1.20084 1.00249 0.84152 0.90756 1.21569 0.88763 0.94083 0.97440 1.21916 0.98990 0.98141 0.95789 1.21474 0.98843 0.95644 0.94546 1.22022 0.94525 1.02511 1.00846 1.22607 0.96675 0.96947 0.90947 1.67535 1.31829 1.08816 1.08859 0.90606 0.88818 0.88789 0.76490 0.91417 0.91299 0.91186 0.91325 0.91667 0.91281 0.91462 0.91775 0.89730 0.87771 0.94562 0.95464 0.92466 0.89264 0.89726 0.84900 0.85440 0.85677 0.83687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.39 36.01 0.37 -0.60 16 2 C 0.51 5.21 7.94 -10.98 -0.09 5.13 16 3 O -0.55 -8.42 17.10 5.56 0.10 -8.33 16 4 N -0.73 -6.30 5.56 -60.29 -0.33 -6.63 16 5 C 0.11 1.16 5.67 -4.04 -0.02 1.14 16 6 C -0.13 -1.22 5.33 -26.73 -0.14 -1.36 16 7 C -0.12 -1.37 5.21 -26.73 -0.14 -1.51 16 8 C -0.10 -1.41 4.50 -26.73 -0.12 -1.53 16 9 C -0.14 -2.35 4.25 -27.88 -0.12 -2.47 16 10 C 0.52 10.44 7.67 -10.99 -0.08 10.36 16 11 O -0.55 -12.13 15.56 5.55 0.09 -12.04 16 12 N -0.59 -11.82 2.44 -176.43 -0.43 -12.25 16 13 C 0.21 4.34 4.08 -5.20 -0.02 4.32 16 14 C -0.53 -13.36 9.69 -34.44 -0.33 -13.69 16 15 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 16 C 0.08 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.89 -25.15 13.96 55.43 0.77 -24.38 16 18 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.26 -5.47 6.54 56.52 0.37 -5.10 16 22 C 0.17 3.12 5.76 -5.19 -0.03 3.09 16 23 C 0.12 2.32 6.36 -82.58 -0.53 1.79 16 24 C -0.13 -2.31 9.58 -39.44 -0.38 -2.69 16 25 C -0.08 -1.30 10.18 -39.28 -0.40 -1.70 16 26 C -0.18 -2.77 10.11 -39.44 -0.40 -3.16 16 27 C 0.09 1.45 11.18 -17.55 -0.20 1.26 16 28 N -0.46 -9.15 10.27 -9.47 -0.10 -9.24 16 29 H 0.07 0.24 7.91 -51.93 -0.41 -0.17 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.40 2.25 8.31 -40.82 -0.34 1.91 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 40 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.08 1.32 7.40 -51.93 -0.38 0.93 16 42 H 0.10 1.97 8.00 -51.93 -0.42 1.56 16 43 H 0.04 0.74 5.50 -51.93 -0.29 0.46 16 44 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 45 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 1.63 7.42 -51.93 -0.39 1.24 16 47 H 0.08 1.30 7.79 -51.93 -0.40 0.90 16 48 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 49 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 50 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 426.08 15.07 6.42 6.42 Total: -1.00 -34.40 426.08 -9.39 -43.79 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -8.51 Total: 7.89 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.72 Total: 0.26 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.50 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.18 Total: -20.37 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.40 -9.39 -43.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264132958.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.453 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds