Wall clock time and date at job start Wed Apr 1 2020 05:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.46978 * 2 1 4 4 C 1.34755 * 116.99982 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.47402 * 119.99861 * 180.02562 * 4 3 2 7 7 C 1.40405 * 120.47924 * 179.97438 * 6 4 3 8 8 C 1.36835 * 118.48994 * 179.76721 * 7 6 4 9 9 C 1.39418 * 119.38203 * 0.50261 * 8 7 6 10 10 N 1.38421 * 119.53795 * 179.76917 * 9 8 7 11 11 C 1.46951 * 111.00549 * 179.72449 * 10 9 8 12 12 C 1.53050 * 109.36620 * 183.18472 * 11 10 9 13 13 N 1.46947 * 109.36678 * 301.59685 * 12 11 10 14 14 C 1.46904 * 111.00539 * 183.18667 * 13 12 11 15 15 H 1.09008 * 109.46730 * 55.00077 * 14 13 12 16 16 C 1.52994 * 109.47162 * 295.00479 * 14 13 12 17 17 C 1.52997 * 109.47449 * 174.99909 * 14 13 12 18 18 C 1.50701 * 109.47212 * 295.00105 * 17 14 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 14 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 C 1.46960 * 110.88088 * 59.31796 * 13 12 11 27 27 C 1.46960 * 110.99544 * 303.52237 * 10 9 8 28 28 N 1.32615 * 120.93132 * 359.48371 * 9 8 7 29 29 C 1.31656 * 121.64388 * 0.26042 * 28 9 8 30 30 H 1.09000 * 109.47416 * 299.99729 * 1 2 3 31 31 H 1.09005 * 109.47178 * 60.00182 * 1 2 3 32 32 H 1.09009 * 109.46984 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47416 * 240.00271 * 2 1 3 34 34 H 1.08997 * 109.47335 * 120.00124 * 2 1 3 35 35 H 1.08000 * 120.75794 * 0.02562 * 7 6 4 36 36 H 1.08002 * 120.31447 * 180.24169 * 8 7 6 37 37 H 1.08998 * 109.49134 * 63.21685 * 11 10 9 38 38 H 1.09007 * 109.50341 * 303.16369 * 11 10 9 39 39 H 1.09006 * 109.49101 * 181.62973 * 12 11 10 40 40 H 1.09001 * 109.50748 * 61.57623 * 12 11 10 41 41 H 1.09000 * 109.47476 * 179.97438 * 16 14 13 42 42 H 1.09008 * 109.46970 * 299.99452 * 16 14 13 43 43 H 1.08996 * 109.47654 * 59.99214 * 16 14 13 44 44 H 1.09002 * 109.47153 * 175.00107 * 17 14 13 45 45 H 1.09001 * 109.46832 * 55.00298 * 17 14 13 46 46 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.48599 * 60.65300 * 26 13 12 48 48 H 1.09000 * 109.49267 * 180.70898 * 26 13 12 49 49 H 1.08995 * 109.49169 * 296.77575 * 27 10 9 50 50 H 1.09001 * 109.49112 * 56.82438 * 27 10 9 51 51 H 1.08000 * 119.74571 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9132 2.9077 0.0000 7 6 5.3035 3.1034 0.0000 8 6 5.7823 4.3853 -0.0044 9 6 4.8836 5.4511 0.0020 10 7 5.3644 6.7491 0.0024 11 6 4.2609 7.7196 0.0030 12 6 4.8319 9.1374 -0.0768 13 7 5.7305 9.3656 1.0633 14 6 6.2409 10.7432 1.0639 15 1 5.4036 11.4408 1.0427 16 6 7.1186 10.9623 -0.1699 17 6 7.0698 10.9794 2.3280 18 6 6.1776 10.8844 3.5388 19 1 5.1247 10.6758 3.4187 20 6 6.7056 11.0626 4.7999 21 7 7.9878 11.3160 4.9461 22 14 5.5998 10.9440 6.3007 23 1 4.2093 10.6517 5.8693 24 1 6.0824 9.8538 7.1862 25 1 5.6289 12.2316 7.0399 26 6 6.8341 8.3951 1.0628 27 6 6.2631 6.9774 1.1426 28 7 3.5745 5.2390 0.0019 29 6 3.0720 4.0221 0.0010 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.9798 2.2614 -0.0008 36 1 6.8464 4.5697 -0.0085 37 1 3.6821 7.6117 0.9203 38 1 3.6163 7.5382 -0.8572 39 1 4.0163 9.8601 -0.0473 40 1 5.3878 9.2541 -1.0071 41 1 7.4970 11.9846 -0.1698 42 1 7.9559 10.2647 -0.1488 43 1 6.5282 10.7940 -1.0705 44 1 7.5214 11.9706 2.2864 45 1 7.8540 10.2254 2.3944 46 1 8.3592 11.4418 5.8334 47 1 7.4129 8.5031 0.1455 48 1 7.4784 8.5767 1.9231 49 1 5.7072 6.8611 2.0728 50 1 7.0784 6.2545 1.1133 51 1 2.0008 3.8847 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276355269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:02 Heat of formation + Delta-G solvation = -29.279981 kcal Electronic energy + Delta-G solvation = -30471.997718 eV Core-core repulsion = 26371.881262 eV Total energy + Delta-G solvation = -4100.116455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.23472 -40.35982 -38.88072 -36.92787 -36.25280 -33.06432 -32.90861 -32.27709 -31.48718 -30.71987 -29.83234 -27.37111 -26.30495 -24.58370 -24.29831 -23.24404 -22.74132 -22.71517 -21.33700 -20.22891 -18.78017 -18.44922 -17.66854 -17.08133 -16.87248 -16.40354 -16.19122 -15.42077 -15.16992 -14.79283 -14.58584 -14.55131 -14.40374 -14.23066 -13.89832 -13.76061 -13.44083 -13.31540 -13.21277 -12.99609 -12.80572 -12.33413 -12.17062 -12.01345 -11.92820 -11.78368 -11.64062 -11.22961 -11.14112 -10.95084 -10.89785 -10.81952 -10.61239 -10.49056 -10.37251 -10.27900 -10.04112 -9.93639 -9.69630 -9.19394 -9.00941 -8.31155 -8.29572 -7.56292 -5.93053 -3.91070 0.30383 1.04292 2.25254 2.30145 3.29677 3.35268 3.43333 3.48775 3.64137 4.15627 4.37971 4.43240 4.53483 4.53540 4.57125 4.59337 4.74981 4.75784 4.86828 5.04253 5.25019 5.26569 5.35525 5.37035 5.41866 5.44116 5.53354 5.55326 5.60455 5.64253 5.67482 5.75817 5.82408 5.91376 5.96711 6.00258 6.10078 6.11036 6.14997 6.27599 6.36764 6.47935 6.59422 6.73559 6.92197 6.98265 7.43993 7.46817 7.60992 7.69776 7.82520 7.94345 8.08221 8.53174 9.15617 9.71239 11.18671 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.002224 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.467870 B =12587.307537 C =13523.249066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.355 6.355 4 C 0.522 3.478 5 O -0.513 6.513 6 C -0.228 4.228 7 C 0.012 3.988 8 C -0.201 4.201 9 C 0.360 3.640 10 N -0.477 5.477 11 C 0.071 3.929 12 C 0.048 3.952 13 N -0.512 5.512 14 C 0.087 3.913 15 H 0.072 0.928 16 C -0.184 4.184 17 C 0.028 3.972 18 C -0.491 4.491 19 H 0.061 0.939 20 C 0.050 3.950 21 N -0.903 5.903 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.287 1.287 26 C 0.055 3.945 27 C 0.064 3.936 28 N -0.528 5.528 29 C 0.196 3.804 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.019 0.981 45 H 0.020 0.980 46 H 0.257 0.743 47 H 0.038 0.962 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.084 0.916 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.830 -18.535 -13.263 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.010 4.010 3 O -0.273 6.273 4 C 0.367 3.633 5 O -0.403 6.403 6 C -0.233 4.233 7 C -0.014 4.014 8 C -0.224 4.224 9 C 0.127 3.873 10 N -0.192 5.192 11 C -0.056 4.056 12 C -0.081 4.081 13 N -0.236 5.236 14 C -0.020 4.020 15 H 0.090 0.910 16 C -0.243 4.243 17 C -0.009 4.009 18 C -0.530 4.530 19 H 0.079 0.921 20 C -0.149 4.149 21 N -0.543 5.543 22 Si 0.717 3.283 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.073 4.073 27 C -0.061 4.061 28 N -0.243 5.243 29 C 0.036 3.964 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.122 0.878 49 H 0.081 0.919 50 H 0.103 0.897 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.022 -17.970 -13.101 24.392 hybrid contribution 0.167 -0.948 0.665 1.170 sum -9.855 -18.918 -12.436 24.691 Atomic orbital electron populations 1.21821 0.92431 1.03073 1.03730 1.23044 0.95418 0.79812 1.02712 1.86540 1.23748 1.32611 1.84353 1.20811 0.80540 0.89458 0.72458 1.90835 1.60392 1.42429 1.46603 1.19882 0.94910 0.91372 1.17166 1.21217 0.93449 0.97607 0.89086 1.21304 1.01488 0.91438 1.08174 1.20281 0.88482 0.90955 0.87582 1.59013 1.19353 1.00045 1.40759 1.22135 0.90843 0.89689 1.02927 1.22258 0.97343 0.95262 0.93205 1.62316 1.17644 1.03836 1.39845 1.21914 0.97045 0.87466 0.95621 0.91022 1.22515 1.00719 1.01921 0.99147 1.19241 0.94608 0.96862 0.90201 1.21209 0.95411 1.45951 0.90380 0.92069 1.25008 0.94888 0.95983 0.99018 1.69968 1.11651 1.50236 1.22489 0.86594 0.81136 0.77336 0.83263 1.19777 1.21358 1.21370 1.22225 0.93825 0.89131 1.02128 1.22483 0.95163 0.98899 0.89581 1.67876 1.13375 1.24493 1.18535 1.23004 1.00346 0.85837 0.87263 0.91298 0.91349 0.90155 0.91147 0.91105 0.83502 0.83551 0.91784 0.89737 0.90196 0.94569 0.92499 0.92903 0.93964 0.96229 0.96224 0.93351 0.94442 0.87802 0.91889 0.89740 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.15 0.38 -0.36 16 2 C 0.06 0.47 6.20 37.15 0.23 0.70 16 3 O -0.36 -3.43 9.49 -40.64 -0.39 -3.82 16 4 C 0.52 5.93 7.89 34.46 0.27 6.20 16 5 O -0.51 -6.89 16.20 -19.27 -0.31 -7.20 16 6 C -0.23 -2.51 5.89 -104.84 -0.62 -3.13 16 7 C 0.01 0.12 9.65 -39.27 -0.38 -0.26 16 8 C -0.20 -2.20 9.14 -39.65 -0.36 -2.56 16 9 C 0.36 4.63 6.39 -155.29 -0.99 3.63 16 10 N -0.48 -6.47 4.72 -173.08 -0.82 -7.29 16 11 C 0.07 0.99 4.77 -3.77 -0.02 0.97 16 12 C 0.05 0.71 5.25 -3.77 -0.02 0.69 16 13 N -0.51 -9.12 4.41 -226.49 -1.00 -10.12 16 14 C 0.09 1.68 2.30 -67.71 -0.16 1.53 16 15 H 0.07 1.42 8.11 -51.92 -0.42 1.00 16 16 C -0.18 -3.01 8.49 37.15 0.32 -2.70 16 17 C 0.03 0.67 4.27 -27.88 -0.12 0.55 16 18 C -0.49 -13.29 8.84 -34.44 -0.30 -13.59 16 19 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 20 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 21 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 22 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.06 0.91 4.82 -3.77 -0.02 0.89 16 27 C 0.06 0.90 5.36 -3.77 -0.02 0.88 16 28 N -0.53 -6.79 8.66 -12.13 -0.11 -6.89 16 29 C 0.20 2.14 10.79 -17.11 -0.18 1.95 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.15 1.35 7.73 -52.49 -0.41 0.94 16 36 H 0.15 1.35 7.16 -52.49 -0.38 0.97 16 37 H 0.06 0.99 8.04 -51.93 -0.42 0.58 16 38 H 0.08 1.11 7.81 -51.92 -0.41 0.70 16 39 H 0.08 1.14 8.12 -51.93 -0.42 0.72 16 40 H 0.04 0.53 6.60 -51.93 -0.34 0.18 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.86 6.46 -51.92 -0.34 0.52 16 43 H 0.04 0.62 6.59 -51.93 -0.34 0.28 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.02 0.50 6.11 -51.93 -0.32 0.18 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.04 0.59 6.46 -51.93 -0.34 0.25 16 48 H 0.10 1.96 6.07 -51.93 -0.32 1.65 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.08 0.99 6.77 -51.93 -0.35 0.64 16 51 H 0.17 1.46 7.61 -52.49 -0.40 1.06 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -31.23 404.25 -11.01 -42.24 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -8.11 Total: -0.61 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.09 Total: -3.29 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -1.18 Total: -50.09 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.70 Total: -11.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.23 -11.01 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276355269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.957 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds