Wall clock time and date at job start Wed Apr 1 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45205 * 109.46978 * 2 1 4 4 C 1.34755 * 116.99982 * 180.02562 * 3 2 1 5 5 O 1.21511 * 119.99848 * 359.97438 * 4 3 2 6 6 C 1.47402 * 119.99861 * 180.02562 * 4 3 2 7 7 C 1.40405 * 120.47924 * 179.97438 * 6 4 3 8 8 C 1.36835 * 118.48994 * 179.76721 * 7 6 4 9 9 C 1.39418 * 119.38203 * 0.50261 * 8 7 6 10 10 N 1.38421 * 119.53795 * 179.76917 * 9 8 7 11 11 C 1.46951 * 111.00549 * 179.72449 * 10 9 8 12 12 C 1.53050 * 109.36620 * 183.18472 * 11 10 9 13 13 N 1.46947 * 109.36678 * 301.59685 * 12 11 10 14 14 C 1.46904 * 111.00539 * 183.18667 * 13 12 11 15 15 H 1.09008 * 109.46730 * 55.00077 * 14 13 12 16 16 C 1.52994 * 109.47162 * 295.00479 * 14 13 12 17 17 C 1.52997 * 109.47449 * 174.99909 * 14 13 12 18 18 C 1.50701 * 109.47212 * 295.00105 * 17 14 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 14 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 14 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46890 * 120.00210 * 22 20 18 25 25 H 1.48501 * 109.47062 * 240.00257 * 22 20 18 26 26 C 1.46960 * 110.88088 * 59.31796 * 13 12 11 27 27 C 1.46960 * 110.99544 * 303.52237 * 10 9 8 28 28 N 1.32615 * 120.93132 * 359.48371 * 9 8 7 29 29 C 1.31656 * 121.64388 * 0.26042 * 28 9 8 30 30 H 1.09000 * 109.47416 * 299.99729 * 1 2 3 31 31 H 1.09005 * 109.47178 * 60.00182 * 1 2 3 32 32 H 1.09009 * 109.46984 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47416 * 240.00271 * 2 1 3 34 34 H 1.08997 * 109.47335 * 120.00124 * 2 1 3 35 35 H 1.08000 * 120.75794 * 0.02562 * 7 6 4 36 36 H 1.08002 * 120.31447 * 180.24169 * 8 7 6 37 37 H 1.08998 * 109.49134 * 63.21685 * 11 10 9 38 38 H 1.09007 * 109.50341 * 303.16369 * 11 10 9 39 39 H 1.09006 * 109.49101 * 181.62973 * 12 11 10 40 40 H 1.09001 * 109.50748 * 61.57623 * 12 11 10 41 41 H 1.09000 * 109.47476 * 179.97438 * 16 14 13 42 42 H 1.09008 * 109.46970 * 299.99452 * 16 14 13 43 43 H 1.08996 * 109.47654 * 59.99214 * 16 14 13 44 44 H 1.09002 * 109.47153 * 175.00107 * 17 14 13 45 45 H 1.09001 * 109.46832 * 55.00298 * 17 14 13 46 46 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 47 47 H 1.09002 * 109.48599 * 60.65300 * 26 13 12 48 48 H 1.09000 * 109.49267 * 180.70898 * 26 13 12 49 49 H 1.08995 * 109.49169 * 296.77575 * 27 10 9 50 50 H 1.09001 * 109.49112 * 56.82438 * 27 10 9 51 51 H 1.08000 * 119.74571 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3499 1.5456 -0.0005 5 8 4.0900 0.5820 -0.0005 6 6 3.9132 2.9077 0.0000 7 6 5.3035 3.1034 0.0000 8 6 5.7823 4.3853 -0.0044 9 6 4.8836 5.4511 0.0020 10 7 5.3644 6.7491 0.0024 11 6 4.2609 7.7196 0.0030 12 6 4.8319 9.1374 -0.0768 13 7 5.7305 9.3656 1.0633 14 6 6.2409 10.7432 1.0639 15 1 5.4036 11.4408 1.0427 16 6 7.1186 10.9623 -0.1699 17 6 7.0698 10.9794 2.3280 18 6 6.1776 10.8844 3.5388 19 1 5.1247 10.6758 3.4187 20 6 6.7056 11.0626 4.7999 21 7 7.9878 11.3160 4.9461 22 14 5.5998 10.9440 6.3007 23 1 4.2093 10.6517 5.8693 24 1 6.0824 9.8538 7.1862 25 1 5.6289 12.2316 7.0399 26 6 6.8341 8.3951 1.0628 27 6 6.2631 6.9774 1.1426 28 7 3.5745 5.2390 0.0019 29 6 3.0720 4.0221 0.0010 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 5.9798 2.2614 -0.0008 36 1 6.8464 4.5697 -0.0085 37 1 3.6821 7.6117 0.9203 38 1 3.6163 7.5382 -0.8572 39 1 4.0163 9.8601 -0.0473 40 1 5.3878 9.2541 -1.0071 41 1 7.4970 11.9846 -0.1698 42 1 7.9559 10.2647 -0.1488 43 1 6.5282 10.7940 -1.0705 44 1 7.5214 11.9706 2.2864 45 1 7.8540 10.2254 2.3944 46 1 8.3592 11.4418 5.8334 47 1 7.4129 8.5031 0.1455 48 1 7.4784 8.5767 1.9231 49 1 5.7072 6.8611 2.0728 50 1 7.0784 6.2545 1.1133 51 1 2.0008 3.8847 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276355269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:01 Heat of formation + Delta-G solvation = -47.335324 kcal Electronic energy + Delta-G solvation = -30472.780656 eV Core-core repulsion = 26371.881262 eV Total energy + Delta-G solvation = -4100.899394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.15593 -41.28333 -40.05414 -37.82573 -37.44383 -34.91880 -33.84693 -33.22349 -32.54839 -31.88934 -30.97002 -29.17712 -27.44536 -25.63861 -25.34582 -24.76850 -23.82332 -23.60316 -22.23961 -21.55477 -20.13585 -19.32150 -18.62992 -18.32819 -18.01064 -17.62196 -17.29333 -16.72443 -16.51111 -16.19033 -15.84531 -15.55396 -15.44641 -15.28152 -15.05171 -14.74691 -14.61843 -14.32010 -14.23594 -13.92036 -13.77272 -13.61224 -13.55679 -13.21145 -13.00833 -12.92857 -12.87765 -12.58504 -12.52869 -12.39218 -12.32422 -12.02850 -11.95720 -11.82523 -11.55510 -11.54536 -11.20310 -11.06744 -11.01497 -10.92101 -10.60729 -10.46448 -9.30651 -8.92819 -8.09088 -6.12941 -0.59923 0.19756 1.35588 1.40354 1.42570 1.54577 1.55756 2.31819 2.47609 2.73339 3.08222 3.27097 3.27763 3.59063 3.76200 3.77997 3.92999 3.95527 4.02479 4.05390 4.08548 4.24410 4.30595 4.34821 4.35868 4.41221 4.46495 4.58229 4.60412 4.62703 4.73870 4.80123 4.85962 4.89638 4.94436 4.96997 5.00874 5.05770 5.10431 5.14315 5.22364 5.26431 5.33183 5.39393 5.52706 5.53804 5.72861 5.92124 5.98097 6.32489 6.41015 6.52235 6.59318 6.78700 7.01267 7.52807 9.02655 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.002224 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.467870 B =12587.307537 C =13523.249066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.355 6.355 4 C 0.525 3.475 5 O -0.537 6.537 6 C -0.229 4.229 7 C 0.013 3.987 8 C -0.196 4.196 9 C 0.341 3.659 10 N -0.475 5.475 11 C 0.080 3.920 12 C 0.054 3.946 13 N -0.533 5.533 14 C 0.096 3.904 15 H 0.065 0.935 16 C -0.173 4.173 17 C 0.034 3.966 18 C -0.496 4.496 19 H 0.056 0.944 20 C -0.003 4.003 21 N -0.937 5.937 22 Si 0.951 3.049 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.061 3.939 27 C 0.073 3.927 28 N -0.544 5.544 29 C 0.195 3.805 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.066 0.934 44 H -0.008 1.008 45 H 0.003 0.997 46 H 0.258 0.742 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.041 0.959 50 H 0.110 0.890 51 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 -20.052 -14.318 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 O -0.272 6.272 4 C 0.372 3.628 5 O -0.429 6.429 6 C -0.234 4.234 7 C -0.012 4.012 8 C -0.218 4.218 9 C 0.109 3.891 10 N -0.190 5.190 11 C -0.047 4.047 12 C -0.075 4.075 13 N -0.258 5.258 14 C -0.012 4.012 15 H 0.084 0.916 16 C -0.232 4.232 17 C -0.003 4.003 18 C -0.534 4.534 19 H 0.074 0.926 20 C -0.199 4.199 21 N -0.579 5.579 22 Si 0.778 3.222 23 H -0.192 1.192 24 H -0.211 1.211 25 H -0.209 1.209 26 C -0.067 4.067 27 C -0.053 4.053 28 N -0.259 5.259 29 C 0.036 3.964 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.183 0.817 37 H 0.063 0.937 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.011 0.989 45 H 0.021 0.979 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.059 0.941 50 H 0.128 0.872 51 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.411 -19.500 -14.171 26.670 hybrid contribution 0.525 -0.573 0.977 1.249 sum -10.886 -20.073 -13.194 26.372 Atomic orbital electron populations 1.21840 0.90389 1.04436 1.03803 1.23332 0.97002 0.78659 1.02798 1.86543 1.22716 1.34139 1.83796 1.20849 0.80965 0.89202 0.71822 1.90824 1.61037 1.43119 1.47898 1.20009 0.95328 0.91376 1.16718 1.21421 0.93558 0.97931 0.88333 1.21468 1.02174 0.90945 1.07259 1.20397 0.88996 0.90905 0.88756 1.59042 1.19120 1.00488 1.40381 1.22002 0.90915 0.89346 1.02421 1.22267 0.96861 0.96021 0.92310 1.62202 1.18483 1.03107 1.41990 1.21600 0.96489 0.88629 0.94495 0.91645 1.22370 1.00387 1.01934 0.98484 1.19097 0.94426 0.94686 0.92101 1.21499 0.95431 1.44916 0.91573 0.92614 1.25787 0.96148 0.95996 1.01989 1.70084 1.13229 1.51521 1.23097 0.85604 0.79498 0.77333 0.79807 1.19194 1.21063 1.20923 1.22088 0.93353 0.90166 1.01126 1.22351 0.95790 0.98020 0.89107 1.67846 1.13623 1.25439 1.18997 1.23276 1.01263 0.85191 0.86713 0.91339 0.91111 0.88151 0.90962 0.91204 0.82154 0.81743 0.93719 0.88560 0.89708 0.93513 0.92508 0.92921 0.91554 0.98939 0.97851 0.93335 0.93315 0.91026 0.94068 0.87180 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 71.98 0.74 -0.40 16 2 C 0.06 0.73 6.20 71.98 0.45 1.17 16 3 O -0.36 -6.34 9.49 -56.66 -0.54 -6.88 16 4 C 0.53 11.24 7.89 70.24 0.55 11.79 16 5 O -0.54 -13.85 16.20 19.80 0.32 -13.53 16 6 C -0.23 -4.69 5.89 -20.00 -0.12 -4.81 16 7 C 0.01 0.25 9.65 22.47 0.22 0.46 16 8 C -0.20 -3.88 9.14 22.23 0.20 -3.68 16 9 C 0.34 8.24 6.39 133.27 0.85 9.09 16 10 N -0.47 -12.20 4.72 -701.50 -3.31 -15.51 16 11 C 0.08 2.14 4.77 86.31 0.41 2.55 16 12 C 0.05 1.51 5.25 86.31 0.45 1.97 16 13 N -0.53 -18.86 4.41 -870.48 -3.84 -22.70 16 14 C 0.10 3.71 2.30 44.91 0.10 3.81 16 15 H 0.07 2.59 8.11 -2.38 -0.02 2.57 16 16 C -0.17 -5.47 8.49 71.98 0.61 -4.86 16 17 C 0.03 1.70 4.27 29.85 0.13 1.83 16 18 C -0.50 -27.40 8.84 25.60 0.23 -27.17 16 19 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 20 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 21 N -0.94 -56.30 13.29 21.45 0.28 -56.01 16 22 Si 0.95 45.05 29.54 68.60 2.03 47.07 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 26 C 0.06 1.99 4.82 86.31 0.42 2.41 16 27 C 0.07 1.99 5.36 86.31 0.46 2.46 16 28 N -0.54 -13.22 8.66 -192.29 -1.66 -14.89 16 29 C 0.20 3.95 10.79 85.05 0.92 4.87 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.16 2.62 7.73 -2.91 -0.02 2.60 16 36 H 0.17 2.59 7.16 -2.91 -0.02 2.56 16 37 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 38 H 0.10 2.36 7.81 -2.38 -0.02 2.34 16 39 H 0.08 2.30 8.12 -2.38 -0.02 2.28 16 40 H 0.05 1.24 6.60 -2.39 -0.02 1.23 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.66 6.46 -2.38 -0.02 1.64 16 43 H 0.07 1.79 6.59 -2.39 -0.02 1.77 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.00 0.17 6.11 -2.39 -0.01 0.16 16 46 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.05 1.47 6.46 -2.39 -0.02 1.46 16 48 H 0.07 2.80 6.07 -2.39 -0.01 2.79 16 49 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.11 2.41 6.77 -2.39 -0.02 2.40 16 51 H 0.19 2.91 7.61 -2.91 -0.02 2.89 16 Total: -1.00 -67.69 404.25 1.29 -66.40 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 0.92 Total: 14.27 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 7.09 Total: 1.78 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -8.53 Total: -109.11 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.22 Total: -20.41 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.69 1.29 -66.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276355269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.062 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds