Wall clock time and date at job start Wed Apr 1 2020 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42907 * 109.46792 * 2 1 4 4 C 1.35424 * 116.99666 * 179.97438 * 3 2 1 5 5 N 1.32239 * 119.80043 * 0.02562 * 4 3 2 6 6 C 1.31880 * 121.79774 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.40502 * 179.97438 * 6 5 4 8 8 C 1.38356 * 121.18679 * 0.02562 * 6 5 4 9 9 C 1.38337 * 119.45915 * 359.97438 * 8 6 5 10 10 C 1.39986 * 118.34896 * 359.97438 * 9 8 6 11 11 C 1.47520 * 120.59470 * 179.97438 * 10 9 8 12 12 O 1.21595 * 119.99824 * 179.97438 * 11 10 9 13 13 N 1.34775 * 120.00202 * 0.02562 * 11 10 9 14 14 C 1.46503 * 120.00141 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.50007 * 305.06674 * 15 14 13 17 17 C 1.53042 * 109.49987 * 184.99990 * 15 14 13 18 18 C 1.53038 * 109.54046 * 178.68590 * 17 15 14 19 19 C 1.53195 * 109.31199 * 61.36334 * 18 17 15 20 20 N 1.46924 * 108.77780 * 305.36600 * 19 18 17 21 21 C 1.36930 * 120.63354 * 233.58535 * 20 19 18 22 22 H 1.07999 * 120.00605 * 152.79678 * 21 20 19 23 23 C 1.38817 * 120.00025 * 332.80655 * 21 20 19 24 24 N 1.31613 * 120.00543 * 159.75390 * 23 21 20 25 25 Si 1.86805 * 119.99557 * 339.74584 * 23 21 20 26 26 H 1.48494 * 109.46748 * 94.90036 * 25 23 21 27 27 H 1.48503 * 109.46930 * 214.89560 * 25 23 21 28 28 H 1.48501 * 109.47210 * 334.89782 * 25 23 21 29 29 C 1.46927 * 118.73827 * 53.60842 * 20 19 18 30 30 H 1.09003 * 109.47390 * 59.99660 * 1 2 3 31 31 H 1.08994 * 109.46684 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46937 * 299.99450 * 1 2 3 33 33 H 1.09004 * 109.46937 * 240.00549 * 2 1 3 34 34 H 1.08988 * 109.47071 * 119.99999 * 2 1 3 35 35 H 1.09004 * 109.46668 * 90.00276 * 7 6 5 36 36 H 1.08998 * 109.47219 * 209.99650 * 7 6 5 37 37 H 1.09002 * 109.47219 * 330.00153 * 7 6 5 38 38 H 1.07999 * 120.26850 * 179.97438 * 8 6 5 39 39 H 1.08003 * 120.82366 * 179.97438 * 9 8 6 40 40 H 0.97001 * 120.00243 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.47018 * 300.00349 * 14 13 11 42 42 H 1.09008 * 109.46862 * 59.99652 * 14 13 11 43 43 H 1.08994 * 109.45727 * 298.70815 * 17 15 14 44 44 H 1.08996 * 109.45787 * 58.67844 * 17 15 14 45 45 H 1.08995 * 109.50222 * 181.31938 * 18 17 15 46 46 H 1.09004 * 109.49294 * 301.38417 * 18 17 15 47 47 H 1.08995 * 109.58493 * 65.15758 * 19 18 17 48 48 H 1.09000 * 109.58529 * 185.58126 * 19 18 17 49 49 H 0.96996 * 120.00406 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.58716 * 186.60274 * 29 20 19 51 51 H 1.09004 * 109.58699 * 66.17499 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6004 0.0005 7 6 6.3265 -0.6350 0.0011 8 6 6.0625 1.8476 0.0011 9 6 5.2713 2.9823 0.0011 10 6 3.8805 2.8230 0.0000 11 6 2.9900 3.9991 0.0005 12 8 1.7835 3.8481 -0.0009 13 7 3.5137 5.2409 0.0016 14 6 2.6294 6.4089 0.0016 15 6 3.4715 7.6862 0.0035 16 1 4.1636 7.6644 0.8452 17 6 2.5526 8.9037 0.1292 18 6 3.3961 10.1801 0.1642 19 6 4.1846 10.3024 -1.1436 20 7 4.9610 9.0714 -1.3446 21 6 6.3115 9.1263 -1.5640 22 1 6.9387 8.2933 -1.2828 23 6 6.8746 10.2528 -2.1479 24 7 8.1605 10.4947 -2.0059 25 14 5.8071 11.4253 -3.1355 26 1 5.3540 12.5372 -2.2617 27 1 6.5936 11.9753 -4.2688 28 1 4.6254 10.6955 -3.6610 29 6 4.2608 7.7803 -1.3061 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 6.5346 -0.9333 -1.0265 36 1 7.2642 -0.4230 0.5148 37 1 5.8049 -1.4424 0.5152 38 1 7.1390 1.9344 0.0015 39 1 5.7156 3.9668 0.0020 40 1 4.4762 5.3614 0.0024 41 1 2.0010 6.3888 -0.8889 42 1 1.9997 6.3879 0.8911 43 1 1.8768 8.9383 -0.7253 44 1 1.9720 8.8270 1.0485 45 1 2.7426 11.0451 0.2773 46 1 4.0890 10.1353 1.0045 47 1 3.4936 10.4386 -1.9754 48 1 4.8607 11.1553 -1.0842 49 1 8.5540 11.2816 -2.4141 50 1 4.9872 6.9691 -1.3540 51 1 3.5759 7.7107 -2.1513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276779564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:16 Heat of formation + Delta-G solvation = -24.613896 kcal Electronic energy + Delta-G solvation = -30753.310699 eV Core-core repulsion = 26653.396581 eV Total energy + Delta-G solvation = -4099.914119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13248 -39.31788 -38.35594 -37.98640 -34.92933 -33.61102 -32.92703 -32.45287 -31.14626 -30.93419 -30.65292 -28.27245 -25.92531 -25.26782 -24.04321 -23.28852 -22.51830 -22.00045 -21.50214 -20.47164 -19.42834 -18.57400 -17.67176 -16.98062 -16.68731 -16.54091 -15.52287 -15.39215 -15.27369 -14.85674 -14.66833 -14.45036 -14.24524 -14.12438 -13.89726 -13.48833 -13.30297 -13.24904 -13.18351 -12.84864 -12.68636 -12.58547 -12.50094 -12.45393 -12.17956 -12.08082 -11.69315 -11.64389 -11.49537 -10.90812 -10.83797 -10.60600 -10.53452 -10.24412 -10.14014 -10.12041 -9.93548 -9.67984 -9.63306 -9.45111 -8.97559 -8.65289 -8.60710 -7.00770 -5.98396 -3.34301 0.46428 1.02691 2.78673 2.84288 3.19075 3.30524 3.47042 3.49892 3.64835 3.84857 4.38672 4.50465 4.59959 4.68357 4.80950 4.81125 4.83999 4.93297 5.07779 5.14830 5.17926 5.19209 5.22286 5.23130 5.28399 5.41156 5.46554 5.59947 5.62228 5.62582 5.64287 5.77145 5.79472 5.84202 5.89153 6.02206 6.09505 6.12721 6.13935 6.29111 6.36954 6.46987 6.55590 6.56700 6.67973 6.70267 6.95389 7.07143 7.48580 7.62356 7.91767 8.28012 8.30658 8.89941 9.68661 10.06848 11.17417 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002524 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.829033 B =11088.787734 C =12608.650948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.378 3.622 5 N -0.549 5.549 6 C 0.191 3.809 7 C -0.108 4.108 8 C -0.218 4.218 9 C -0.003 4.003 10 C -0.216 4.216 11 C 0.563 3.437 12 O -0.522 6.522 13 N -0.723 5.723 14 C 0.130 3.870 15 C -0.120 4.120 16 H 0.078 0.922 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.124 3.876 20 N -0.606 5.606 21 C -0.261 4.261 22 H 0.085 0.915 23 C 0.023 3.977 24 N -0.909 5.909 25 Si 0.883 3.117 26 H -0.289 1.289 27 H -0.304 1.304 28 H -0.270 1.270 29 C 0.156 3.844 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.400 0.600 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.025 0.975 48 H 0.071 0.929 49 H 0.263 0.737 50 H 0.059 0.941 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 -20.484 6.208 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.198 3.802 5 N -0.274 5.274 6 C 0.053 3.947 7 C -0.166 4.166 8 C -0.239 4.239 9 C -0.029 4.029 10 C -0.222 4.222 11 C 0.349 3.651 12 O -0.399 6.399 13 N -0.376 5.376 14 C 0.006 3.994 15 C -0.140 4.140 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.173 4.173 19 C -0.001 4.001 20 N -0.329 5.329 21 C -0.389 4.389 22 H 0.102 0.898 23 C -0.176 4.176 24 N -0.552 5.552 25 Si 0.714 3.286 26 H -0.217 1.217 27 H -0.232 1.232 28 H -0.195 1.195 29 C 0.030 3.970 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.236 0.764 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.043 0.957 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -9.891 -21.115 6.149 24.113 hybrid contribution 0.500 1.502 -0.613 1.697 sum -9.391 -19.613 5.536 22.439 Atomic orbital electron populations 1.21787 0.92842 1.02480 1.03761 1.22677 0.95178 0.81351 1.02208 1.86538 1.15516 1.29717 1.85573 1.19740 0.84533 0.88318 0.87620 1.67283 1.06013 1.32500 1.21618 1.21183 0.88763 0.95392 0.89335 1.20825 0.98041 0.94078 1.03608 1.21768 1.01817 0.92124 1.08163 1.21723 0.91182 1.00194 0.89758 1.20024 0.94237 0.92408 1.15522 1.17731 0.87709 0.82538 0.77099 1.90815 1.14185 1.85902 1.49010 1.45941 1.10778 1.05383 1.75457 1.21428 0.92504 0.83436 1.01992 1.21953 0.97734 0.92683 1.01662 0.90366 1.21340 0.97173 0.94392 1.00966 1.21997 0.98587 0.96330 1.00426 1.21352 0.94233 0.90566 0.93990 1.44332 1.05304 0.99876 1.83408 1.18886 0.80653 1.04564 1.34769 0.89754 1.25263 0.95274 0.98103 0.98922 1.69822 1.11394 1.28062 1.45889 0.86937 0.80375 0.80878 0.80410 1.21699 1.23232 1.19462 1.20929 0.94276 0.88896 0.92885 0.91468 0.90507 0.91518 0.91696 0.91729 0.89741 0.89995 0.90258 0.83713 0.83397 0.76409 0.91452 0.91723 0.92297 0.92731 0.92686 0.91723 0.95677 0.91134 0.92765 0.92292 0.95785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.64 6.03 37.16 0.22 0.87 16 3 O -0.27 -3.86 8.22 -39.73 -0.33 -4.19 16 4 C 0.38 5.22 7.51 -16.61 -0.12 5.10 16 5 N -0.55 -6.59 9.11 -9.21 -0.08 -6.67 16 6 C 0.19 1.85 6.78 -82.53 -0.56 1.29 16 7 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 8 C -0.22 -1.98 9.71 -39.50 -0.38 -2.36 16 9 C 0.00 -0.03 9.64 -38.89 -0.37 -0.41 16 10 C -0.22 -2.88 5.90 -104.69 -0.62 -3.49 16 11 C 0.56 8.51 7.77 -12.48 -0.10 8.41 16 12 O -0.52 -9.56 15.19 -16.49 -0.25 -9.81 16 13 N -0.72 -9.66 5.29 -61.35 -0.32 -9.98 16 14 C 0.13 1.81 5.07 -4.04 -0.02 1.79 16 15 C -0.12 -1.81 2.37 -90.50 -0.21 -2.03 16 16 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 17 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 18 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 19 C 0.12 2.64 4.19 -3.71 -0.02 2.63 16 20 N -0.61 -13.85 2.77 -172.32 -0.48 -14.33 16 21 C -0.26 -7.03 10.04 -15.06 -0.15 -7.18 16 22 H 0.08 2.39 8.05 -52.49 -0.42 1.97 16 23 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 24 N -0.91 -27.34 13.97 55.49 0.78 -26.56 16 25 Si 0.88 22.19 24.35 -169.99 -4.14 18.06 16 26 H -0.29 -7.04 6.70 56.52 0.38 -6.66 16 27 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 28 H -0.27 -6.67 6.45 56.52 0.36 -6.31 16 29 C 0.16 2.90 5.60 -3.71 -0.02 2.87 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.06 0.63 8.10 -51.94 -0.42 0.21 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.35 8.07 -51.93 -0.42 -0.07 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.15 1.25 6.52 -52.48 -0.34 0.91 16 40 H 0.40 4.70 5.81 -40.82 -0.24 4.46 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.03 0.54 6.98 -51.93 -0.36 0.18 16 48 H 0.07 1.66 4.50 -51.93 -0.23 1.42 16 49 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.06 1.05 7.14 -51.93 -0.37 0.68 16 51 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 402.19 15.07 6.06 6.06 Total: -1.00 -34.06 402.19 -9.11 -43.17 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.34 Total: 1.48 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.00 Total: 2.77 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.11 Total: -57.55 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -0.58 Total: -13.99 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.06 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.06 -9.11 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276779564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.559 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds