Wall clock time and date at job start Wed Apr 1 2020 04:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42907 * 109.46792 * 2 1 4 4 C 1.35424 * 116.99666 * 179.97438 * 3 2 1 5 5 N 1.32239 * 119.80043 * 0.02562 * 4 3 2 6 6 C 1.31880 * 121.79774 * 179.97438 * 5 4 3 7 7 C 1.50705 * 119.40502 * 179.97438 * 6 5 4 8 8 C 1.38356 * 121.18679 * 0.02562 * 6 5 4 9 9 C 1.38337 * 119.45915 * 359.97438 * 8 6 5 10 10 C 1.39986 * 118.34896 * 359.97438 * 9 8 6 11 11 C 1.47520 * 120.59470 * 179.97438 * 10 9 8 12 12 O 1.21595 * 119.99824 * 179.97438 * 11 10 9 13 13 N 1.34775 * 120.00202 * 0.02562 * 11 10 9 14 14 C 1.46503 * 120.00141 * 179.97438 * 13 11 10 15 15 C 1.52992 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08995 * 109.50007 * 305.06674 * 15 14 13 17 17 C 1.53042 * 109.49987 * 184.99990 * 15 14 13 18 18 C 1.53038 * 109.54046 * 178.68590 * 17 15 14 19 19 C 1.53195 * 109.31199 * 61.36334 * 18 17 15 20 20 N 1.46924 * 108.77780 * 305.36600 * 19 18 17 21 21 C 1.36930 * 120.63354 * 233.58535 * 20 19 18 22 22 H 1.07999 * 120.00605 * 152.79678 * 21 20 19 23 23 C 1.38817 * 120.00025 * 332.80655 * 21 20 19 24 24 N 1.31613 * 120.00543 * 159.75390 * 23 21 20 25 25 Si 1.86805 * 119.99557 * 339.74584 * 23 21 20 26 26 H 1.48494 * 109.46748 * 94.90036 * 25 23 21 27 27 H 1.48503 * 109.46930 * 214.89560 * 25 23 21 28 28 H 1.48501 * 109.47210 * 334.89782 * 25 23 21 29 29 C 1.46927 * 118.73827 * 53.60842 * 20 19 18 30 30 H 1.09003 * 109.47390 * 59.99660 * 1 2 3 31 31 H 1.08994 * 109.46684 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46937 * 299.99450 * 1 2 3 33 33 H 1.09004 * 109.46937 * 240.00549 * 2 1 3 34 34 H 1.08988 * 109.47071 * 119.99999 * 2 1 3 35 35 H 1.09004 * 109.46668 * 90.00276 * 7 6 5 36 36 H 1.08998 * 109.47219 * 209.99650 * 7 6 5 37 37 H 1.09002 * 109.47219 * 330.00153 * 7 6 5 38 38 H 1.07999 * 120.26850 * 179.97438 * 8 6 5 39 39 H 1.08003 * 120.82366 * 179.97438 * 9 8 6 40 40 H 0.97001 * 120.00243 * 359.97438 * 13 11 10 41 41 H 1.09004 * 109.47018 * 300.00349 * 14 13 11 42 42 H 1.09008 * 109.46862 * 59.99652 * 14 13 11 43 43 H 1.08994 * 109.45727 * 298.70815 * 17 15 14 44 44 H 1.08996 * 109.45787 * 58.67844 * 17 15 14 45 45 H 1.08995 * 109.50222 * 181.31938 * 18 17 15 46 46 H 1.09004 * 109.49294 * 301.38417 * 18 17 15 47 47 H 1.08995 * 109.58493 * 65.15758 * 19 18 17 48 48 H 1.09000 * 109.58529 * 185.58126 * 19 18 17 49 49 H 0.96996 * 120.00406 * 179.97438 * 24 23 21 50 50 H 1.08998 * 109.58716 * 186.60274 * 29 20 19 51 51 H 1.09004 * 109.58699 * 66.17499 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3474 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0005 6 6 5.4635 0.6004 0.0005 7 6 6.3265 -0.6350 0.0011 8 6 6.0625 1.8476 0.0011 9 6 5.2713 2.9823 0.0011 10 6 3.8805 2.8230 0.0000 11 6 2.9900 3.9991 0.0005 12 8 1.7835 3.8481 -0.0009 13 7 3.5137 5.2409 0.0016 14 6 2.6294 6.4089 0.0016 15 6 3.4715 7.6862 0.0035 16 1 4.1636 7.6644 0.8452 17 6 2.5526 8.9037 0.1292 18 6 3.3961 10.1801 0.1642 19 6 4.1846 10.3024 -1.1436 20 7 4.9610 9.0714 -1.3446 21 6 6.3115 9.1263 -1.5640 22 1 6.9387 8.2933 -1.2828 23 6 6.8746 10.2528 -2.1479 24 7 8.1605 10.4947 -2.0059 25 14 5.8071 11.4253 -3.1355 26 1 5.3540 12.5372 -2.2617 27 1 6.5936 11.9753 -4.2688 28 1 4.6254 10.6955 -3.6610 29 6 4.2608 7.7803 -1.3061 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 6.5346 -0.9333 -1.0265 36 1 7.2642 -0.4230 0.5148 37 1 5.8049 -1.4424 0.5152 38 1 7.1390 1.9344 0.0015 39 1 5.7156 3.9668 0.0020 40 1 4.4762 5.3614 0.0024 41 1 2.0010 6.3888 -0.8889 42 1 1.9997 6.3879 0.8911 43 1 1.8768 8.9383 -0.7253 44 1 1.9720 8.8270 1.0485 45 1 2.7426 11.0451 0.2773 46 1 4.0890 10.1353 1.0045 47 1 3.4936 10.4386 -1.9754 48 1 4.8607 11.1553 -1.0842 49 1 8.5540 11.2816 -2.4141 50 1 4.9872 6.9691 -1.3540 51 1 3.5759 7.7107 -2.1513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276779564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:15 Heat of formation + Delta-G solvation = -47.518819 kcal Electronic energy + Delta-G solvation = -30754.303931 eV Core-core repulsion = 26653.396581 eV Total energy + Delta-G solvation = -4100.907351 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.03165 -40.48334 -39.42454 -39.22093 -36.32363 -34.85625 -34.19276 -33.29118 -32.76347 -32.05089 -31.85289 -29.08048 -27.38349 -26.85752 -24.87360 -24.20926 -23.66657 -23.30693 -22.87837 -21.58014 -20.82304 -19.48898 -18.84461 -18.47708 -17.88611 -17.43558 -17.25644 -16.63028 -16.48994 -15.82869 -15.66265 -15.52125 -15.37848 -15.22378 -15.07170 -15.05833 -14.83567 -14.24485 -14.13976 -13.97547 -13.91318 -13.62791 -13.52884 -13.31721 -13.27085 -13.17998 -13.03055 -12.83623 -12.55162 -12.46859 -12.17059 -12.10725 -11.69660 -11.69486 -11.56222 -11.36372 -11.26735 -11.16416 -10.98695 -10.68032 -10.62792 -10.11374 -9.48019 -8.91510 -8.15055 -5.45843 -0.40555 0.19780 1.29916 1.41749 1.49720 1.82064 1.95149 2.12637 2.42491 2.72686 3.06870 3.08804 3.32073 3.66145 3.70548 3.85297 3.86897 3.96819 4.01893 4.03894 4.10812 4.20132 4.25138 4.30191 4.39609 4.42389 4.54334 4.64645 4.67507 4.79114 4.79502 4.80328 4.82324 4.84801 4.90246 4.91619 4.98618 4.99731 5.09131 5.14052 5.15712 5.18762 5.26314 5.29895 5.42991 5.46940 5.58418 5.88083 6.14276 6.20570 6.47842 6.72105 6.93027 7.19400 7.64143 8.05506 9.04395 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.002524 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.829033 B =11088.787734 C =12608.650948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.296 6.296 4 C 0.358 3.642 5 N -0.559 5.559 6 C 0.186 3.814 7 C -0.106 4.106 8 C -0.212 4.212 9 C -0.002 4.002 10 C -0.242 4.242 11 C 0.562 3.438 12 O -0.562 6.562 13 N -0.716 5.716 14 C 0.139 3.861 15 C -0.103 4.103 16 H 0.076 0.924 17 C -0.099 4.099 18 C -0.126 4.126 19 C 0.115 3.885 20 N -0.619 5.619 21 C -0.243 4.243 22 H 0.061 0.939 23 C -0.035 4.035 24 N -0.956 5.956 25 Si 0.941 3.059 26 H -0.278 1.278 27 H -0.315 1.315 28 H -0.263 1.263 29 C 0.152 3.848 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.408 0.592 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.029 0.971 48 H 0.046 0.954 49 H 0.260 0.740 50 H 0.060 0.940 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.251 -21.448 6.839 24.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.202 6.202 4 C 0.178 3.822 5 N -0.285 5.285 6 C 0.049 3.951 7 C -0.162 4.162 8 C -0.232 4.232 9 C -0.027 4.027 10 C -0.248 4.248 11 C 0.350 3.650 12 O -0.442 6.442 13 N -0.368 5.368 14 C 0.015 3.985 15 C -0.124 4.124 16 H 0.095 0.905 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.010 4.010 20 N -0.344 5.344 21 C -0.372 4.372 22 H 0.079 0.921 23 C -0.229 4.229 24 N -0.602 5.602 25 Si 0.771 3.229 26 H -0.205 1.205 27 H -0.244 1.244 28 H -0.188 1.188 29 C 0.027 3.973 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.195 0.805 39 H 0.182 0.818 40 H 0.245 0.755 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.078 0.922 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -10.637 -22.087 6.793 25.439 hybrid contribution 0.789 1.656 -0.778 1.993 sum -9.848 -20.430 6.016 23.464 Atomic orbital electron populations 1.21806 0.91574 1.04089 1.02855 1.22866 0.96183 0.80218 1.02463 1.86506 1.16254 1.31600 1.85822 1.19979 0.84684 0.89016 0.88502 1.67358 1.07035 1.31948 1.22125 1.21923 0.88358 0.97239 0.87627 1.20954 0.98249 0.92354 1.04691 1.22169 1.03310 0.91281 1.06457 1.21977 0.90117 1.01665 0.88988 1.20019 0.95221 0.91632 1.17968 1.18024 0.87469 0.83262 0.76224 1.90782 1.15834 1.86480 1.51069 1.45877 1.11177 1.04935 1.74843 1.21301 0.92230 0.82827 1.02124 1.21741 0.97532 0.93764 0.99327 0.90536 1.21362 0.96870 0.92613 1.02821 1.21903 0.98604 0.98730 0.97302 1.21435 0.93995 0.88970 0.96554 1.44483 1.04224 1.02031 1.83626 1.18905 0.82528 1.03188 1.32602 0.92146 1.25838 0.96228 1.00312 1.00570 1.69938 1.13168 1.29193 1.47917 0.85989 0.78741 0.79465 0.78668 1.20494 1.24385 1.18761 1.21098 0.94393 0.86958 0.94817 0.92418 0.87598 0.92279 0.91470 0.91300 0.88515 0.87537 0.90223 0.80464 0.81750 0.75467 0.92008 0.90926 0.91620 0.89808 0.90046 0.92502 0.95276 0.93597 0.93089 0.92199 0.95639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 10.28 71.98 0.74 -1.75 16 2 C 0.06 1.22 6.03 71.98 0.43 1.66 16 3 O -0.30 -8.80 8.22 -66.38 -0.55 -9.35 16 4 C 0.36 10.00 7.51 85.13 0.64 10.64 16 5 N -0.56 -13.08 9.11 -296.05 -2.70 -15.78 16 6 C 0.19 3.25 6.78 42.58 0.29 3.54 16 7 C -0.11 -0.98 10.16 71.24 0.72 -0.26 16 8 C -0.21 -3.34 9.71 22.32 0.22 -3.12 16 9 C 0.00 -0.04 9.64 22.72 0.22 0.18 16 10 C -0.24 -6.44 5.90 -19.91 -0.12 -6.56 16 11 C 0.56 17.04 7.77 86.69 0.67 17.71 16 12 O -0.56 -20.95 15.19 16.80 0.26 -20.70 16 13 N -0.72 -18.47 5.29 -466.27 -2.46 -20.94 16 14 C 0.14 3.62 5.07 86.38 0.44 4.06 16 15 C -0.10 -2.90 2.37 -10.72 -0.03 -2.93 16 16 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 17 C -0.10 -2.59 5.17 30.62 0.16 -2.43 16 18 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 19 C 0.12 4.71 4.19 86.36 0.36 5.07 16 20 N -0.62 -27.76 2.77 -699.09 -1.94 -29.70 16 21 C -0.24 -13.18 10.04 84.04 0.84 -12.34 16 22 H 0.06 3.51 8.05 -2.91 -0.02 3.48 16 23 C -0.03 -1.99 5.24 84.86 0.44 -1.55 16 24 N -0.96 -58.88 13.97 21.65 0.30 -58.58 16 25 Si 0.94 46.27 24.35 68.60 1.67 47.94 16 26 H -0.28 -12.99 6.70 99.48 0.67 -12.32 16 27 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 28 H -0.26 -12.44 6.45 99.48 0.64 -11.80 16 29 C 0.15 5.43 5.60 86.36 0.48 5.91 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.35 8.11 -2.38 -0.02 1.33 16 34 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.11 0.49 8.07 -2.39 -0.02 0.47 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.17 2.50 6.52 -2.91 -0.02 2.49 16 40 H 0.41 9.11 5.81 -92.71 -0.54 8.57 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.83 8.14 -2.38 -0.02 1.82 16 43 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.03 1.18 6.98 -2.39 -0.02 1.16 16 48 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 49 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 50 H 0.06 2.08 7.14 -2.39 -0.02 2.07 16 51 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -76.06 402.19 1.57 -74.49 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.29 Total: 18.54 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.71 Total: 14.07 kcal Atomic # 7 Polarization: -118.19 SS G_CDS: -6.80 Total: -124.99 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.29 Total: -30.04 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.67 Total: 47.94 kcal Total: -76.06 1.57 -74.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276779564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.968 kcal (2) G-P(sol) polarization free energy of solvation -76.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds