Wall clock time and date at job start Wed Apr 1 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45200 * 109.46963 * 2 1 4 4 C 1.34630 * 117.00323 * 180.02562 * 3 2 1 5 5 O 1.21339 * 119.99516 * 0.02562 * 4 3 2 6 6 C 1.48674 * 120.00231 * 180.02562 * 4 3 2 7 7 N 1.30696 * 119.02955 * 0.02562 * 6 4 3 8 8 C 1.35302 * 120.56892 * 179.97438 * 7 6 4 9 9 N 1.31848 * 120.59771 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99910 * 354.84159 * 9 8 7 11 11 C 1.53004 * 109.46612 * 117.54847 * 10 9 8 12 12 C 1.50701 * 115.55271 * 39.73467 * 11 10 9 13 13 H 1.07995 * 119.99724 * 264.83867 * 12 11 10 14 14 C 1.37882 * 119.99694 * 84.83215 * 12 11 10 15 15 N 1.31504 * 120.00221 * 4.86453 * 14 12 11 16 16 Si 1.86799 * 119.99502 * 184.86436 * 14 12 11 17 17 H 1.48498 * 109.47298 * 60.00002 * 16 14 12 18 18 H 1.48495 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47151 * 299.99845 * 16 14 12 20 20 C 1.52995 * 117.49704 * 254.02264 * 11 10 9 21 21 C 1.52998 * 60.00099 * 252.51289 * 20 11 10 22 22 C 1.46853 * 118.80393 * 359.97438 * 8 7 6 23 23 C 1.35064 * 118.24342 * 0.02562 * 22 8 7 24 24 C 1.50706 * 120.36614 * 180.02562 * 23 22 8 25 25 C 1.53002 * 109.47012 * 359.97438 * 24 23 22 26 26 C 1.52994 * 109.47242 * 119.99905 * 24 23 22 27 27 C 1.53000 * 109.46552 * 239.99733 * 24 23 22 28 28 N 1.36064 * 119.02947 * 179.97438 * 6 4 3 29 29 H 0.97006 * 119.41341 * 0.05011 * 28 6 4 30 30 H 1.08996 * 109.47405 * 59.99763 * 1 2 3 31 31 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47287 * 299.99530 * 1 2 3 33 33 H 1.09004 * 109.47143 * 240.00811 * 2 1 3 34 34 H 1.08996 * 109.47405 * 120.00237 * 2 1 3 35 35 H 1.09001 * 109.46965 * 237.54600 * 10 9 8 36 36 H 1.09000 * 109.47181 * 357.54811 * 10 9 8 37 37 H 0.97003 * 119.99979 * 184.99740 * 15 14 12 38 38 H 1.08998 * 117.49930 * 0.02562 * 20 11 10 39 39 H 1.08999 * 117.49845 * 145.02977 * 20 11 10 40 40 H 1.08995 * 117.50127 * 252.50896 * 21 20 11 41 41 H 1.09001 * 117.51738 * 107.48207 * 21 20 11 42 42 H 1.08004 * 120.87801 * 180.27630 * 22 8 7 43 43 H 1.08991 * 109.47299 * 60.00259 * 25 24 23 44 44 H 1.09003 * 109.46713 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.46996 * 299.99730 * 25 24 23 46 46 H 1.08998 * 109.47472 * 59.99273 * 26 24 23 47 47 H 1.08998 * 109.46942 * 179.97438 * 26 24 23 48 48 H 1.09006 * 109.46838 * 299.99641 * 26 24 23 49 49 H 1.08994 * 109.47601 * 59.99982 * 27 24 23 50 50 H 1.09003 * 109.46983 * 180.02562 * 27 24 23 51 51 H 1.09004 * 109.47035 * 299.99534 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5455 -0.0005 5 8 4.0877 0.5832 -0.0015 6 6 3.9168 2.9194 0.0000 7 7 3.1032 3.9422 0.0015 8 6 3.5865 5.2059 0.0026 9 7 2.7662 6.2382 0.0046 10 6 1.3211 6.0256 -0.1083 11 6 0.6300 6.5376 1.1571 12 6 1.1765 7.8238 1.7211 13 1 1.9150 7.7972 2.5086 14 6 0.7336 9.0343 1.2317 15 7 -0.2336 9.0695 0.3414 16 14 1.5076 10.6244 1.8333 17 1 2.9587 10.6190 1.5178 18 1 0.8582 11.7771 1.1591 19 1 1.3208 10.7412 3.3020 20 6 0.1101 5.4952 2.1490 21 6 -0.8742 6.2910 1.2894 22 6 5.0411 5.4071 0.0026 23 6 5.8373 4.3161 0.0010 24 6 7.3368 4.4671 0.0015 25 6 7.6996 5.9535 0.0032 26 6 7.9163 3.7987 1.2497 27 6 7.9166 3.8025 -1.2487 28 7 5.2685 3.0748 0.0000 29 1 5.8384 2.2898 -0.0011 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.9408 6.5672 -0.9745 36 1 1.1186 4.9613 -0.2277 37 1 -0.4958 9.9143 -0.0567 38 1 0.2608 4.4447 1.9003 39 1 0.1633 5.7395 3.2099 40 1 -1.4684 7.0588 1.7848 41 1 -1.3715 5.7643 0.4749 42 1 5.4632 6.4013 0.0079 43 1 7.2865 6.4273 0.8936 44 1 8.7841 6.0627 0.0031 45 1 7.2868 6.4293 -0.8863 46 1 7.6577 2.7398 1.2481 47 1 9.0008 3.9075 1.2498 48 1 7.5031 4.2722 2.1404 49 1 7.5037 4.2786 -2.1380 50 1 9.0011 3.9113 -1.2482 51 1 7.6580 2.7436 -1.2503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343045748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:16 Heat of formation + Delta-G solvation = 3.410870 kcal Electronic energy + Delta-G solvation = -31429.973368 eV Core-core repulsion = 27331.274494 eV Total energy + Delta-G solvation = -4098.698874 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.35359 -40.18509 -37.47226 -37.05501 -36.47526 -34.65169 -32.48875 -31.69278 -31.58843 -30.74469 -27.75245 -27.59438 -26.09651 -25.77959 -24.99655 -23.41275 -22.58988 -21.09953 -20.86092 -19.83725 -18.89029 -18.58187 -17.94257 -17.08530 -16.93313 -16.72228 -15.82072 -15.18695 -15.03936 -14.48892 -14.45152 -14.26898 -14.05422 -13.92711 -13.88205 -13.51629 -13.11610 -12.99037 -12.68081 -12.58095 -12.33665 -12.18793 -12.08772 -11.95745 -11.81416 -11.64856 -11.48983 -11.36073 -11.20881 -11.06139 -11.02382 -10.78136 -10.75572 -10.64529 -10.33497 -10.01205 -9.96045 -9.81322 -9.28133 -8.97037 -8.30787 -8.13254 -7.83189 -6.97220 -5.80252 -3.81547 0.63525 1.67016 1.81102 2.39506 3.18809 3.45511 3.48710 3.53432 3.93014 4.10696 4.12866 4.47694 4.61033 4.65933 4.71136 4.72888 4.84706 4.91037 5.02093 5.26845 5.27116 5.36256 5.41973 5.45717 5.49410 5.52369 5.55017 5.58407 5.60919 5.63045 5.72309 5.77634 5.81321 5.98475 6.02373 6.06326 6.09246 6.27488 6.45939 6.55286 6.74360 6.83203 6.92470 6.95348 7.09484 7.22855 7.28409 7.32539 7.60062 7.75677 8.08948 8.14962 8.61154 8.87461 9.15300 9.80402 11.29518 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007619 B = 0.004239 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3674.177668 B = 6603.757334 C = 9796.216978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.316 6.316 4 C 0.538 3.462 5 O -0.502 6.502 6 C 0.365 3.635 7 N -0.468 5.468 8 C 0.275 3.725 9 N -0.427 5.427 10 C 0.082 3.918 11 C 0.051 3.949 12 C -0.463 4.463 13 H 0.052 0.948 14 C 0.072 3.928 15 N -0.886 5.886 16 Si 0.886 3.114 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.281 1.281 20 C -0.214 4.214 21 C -0.149 4.149 22 C -0.167 4.167 23 C 0.127 3.873 24 C -0.021 4.021 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.143 4.143 28 N -0.623 5.623 29 H 0.415 0.585 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.256 0.744 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.156 0.844 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.150 -18.054 -3.111 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.230 6.230 4 C 0.378 3.622 5 O -0.389 6.389 6 C 0.086 3.914 7 N -0.197 5.197 8 C -0.002 4.002 9 N -0.143 5.143 10 C -0.048 4.048 11 C 0.050 3.950 12 C -0.501 4.501 13 H 0.071 0.929 14 C -0.129 4.129 15 N -0.525 5.525 16 Si 0.714 3.286 17 H -0.202 1.202 18 H -0.216 1.216 19 H -0.206 1.206 20 C -0.251 4.251 21 C -0.187 4.187 22 C -0.197 4.197 23 C 0.023 3.977 24 C -0.022 4.022 25 C -0.202 4.202 26 C -0.201 4.201 27 C -0.201 4.201 28 N -0.249 5.249 29 H 0.252 0.748 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.173 0.827 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.083 0.917 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.012 -16.962 -3.135 21.606 hybrid contribution 1.024 -0.218 0.254 1.077 sum 14.036 -17.180 -2.882 22.371 Atomic orbital electron populations 1.21820 0.91919 1.02976 1.04431 1.23222 0.96055 0.79192 1.02740 1.86719 1.21414 1.32599 1.82225 1.20372 0.81928 0.87032 0.72883 1.90839 1.60760 1.41331 1.45922 1.20457 0.81102 0.92268 0.97594 1.69330 1.34958 1.00066 1.15299 1.21240 0.92585 0.85119 1.01264 1.73402 1.06603 1.25561 1.08728 1.21748 0.85852 0.97662 0.99579 1.18788 0.91758 0.93419 0.91053 1.20170 1.22040 0.88478 1.19458 0.92944 1.24861 0.94167 0.98422 0.95486 1.69996 1.27577 1.25844 1.29054 0.86774 0.79852 0.83395 0.78607 1.20181 1.21581 1.20646 1.23040 1.09416 0.95579 0.97050 1.22464 0.94697 1.01027 1.00530 1.22150 0.91126 0.98659 1.07742 1.20003 0.94253 0.83318 1.00165 1.19601 0.87565 0.98186 0.96875 1.21966 1.01748 0.92936 1.03541 1.21922 1.01241 1.00211 0.96769 1.21922 1.01252 1.00223 0.96690 1.41347 1.04908 1.08824 1.69843 0.74770 0.91046 0.90042 0.90904 0.90864 0.90813 0.90470 0.94217 0.93384 0.91758 0.91046 0.89832 0.92222 0.82696 0.91221 0.91656 0.91343 0.92633 0.91434 0.91663 0.91767 0.91444 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.29 37.15 0.38 -0.89 16 2 C 0.06 0.60 6.19 37.15 0.23 0.83 16 3 O -0.32 -4.34 10.01 -40.31 -0.40 -4.75 16 4 C 0.54 7.38 8.00 35.04 0.28 7.66 16 5 O -0.50 -6.64 16.16 -19.14 -0.31 -6.95 16 6 C 0.37 5.47 7.67 -155.28 -1.19 4.28 16 7 N -0.47 -8.81 8.57 -8.93 -0.08 -8.89 16 8 C 0.28 5.61 7.60 -155.84 -1.18 4.42 16 9 N -0.43 -10.39 9.94 -59.17 -0.59 -10.98 16 10 C 0.08 2.08 6.41 -4.04 -0.03 2.05 16 11 C 0.05 1.36 1.85 -155.66 -0.29 1.08 16 12 C -0.46 -13.57 8.16 -34.44 -0.28 -13.85 16 13 H 0.05 1.57 7.82 -52.49 -0.41 1.16 16 14 C 0.07 2.10 5.43 -17.82 -0.10 2.00 16 15 N -0.89 -26.47 12.65 55.43 0.70 -25.77 16 16 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 C -0.21 -5.20 9.88 -26.73 -0.26 -5.46 16 21 C -0.15 -3.80 9.18 -26.73 -0.25 -4.04 16 22 C -0.17 -2.66 9.22 -37.23 -0.34 -3.00 16 23 C 0.13 1.55 5.46 -81.62 -0.45 1.10 16 24 C -0.02 -0.18 0.88 -155.66 -0.14 -0.32 16 25 C -0.14 -1.22 7.14 37.16 0.27 -0.95 16 26 C -0.14 -1.06 8.38 37.15 0.31 -0.75 16 27 C -0.14 -1.01 8.38 37.16 0.31 -0.70 16 28 N -0.62 -7.48 5.11 -6.88 -0.04 -7.51 16 29 H 0.42 3.96 6.97 -40.82 -0.28 3.67 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 36 H 0.04 0.96 6.54 -51.93 -0.34 0.62 16 37 H 0.26 7.36 8.32 -40.82 -0.34 7.02 16 38 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16 39 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 40 H 0.08 2.26 8.14 -51.93 -0.42 1.84 16 41 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 42 H 0.16 2.35 5.95 -52.48 -0.31 2.04 16 43 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16 46 H 0.05 0.38 7.60 -51.93 -0.39 -0.02 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 51 H 0.05 0.36 7.60 -51.93 -0.39 -0.03 16 LS Contribution 421.34 15.07 6.35 6.35 Total: -1.00 -34.29 421.34 -10.50 -44.79 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -8.39 Total: 2.80 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -2.72 Total: -6.55 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.00 Total: -53.15 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -0.71 Total: -11.70 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.29 -10.50 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343045748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.201 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds