Wall clock time and date at job start Wed Apr 1 2020 05:29:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 O 1.45200 * 109.46963 * 2 1
4 4 C 1.34630 * 117.00323 * 180.02562 * 3 2 1
5 5 O 1.21339 * 119.99516 * 0.02562 * 4 3 2
6 6 C 1.48674 * 120.00231 * 180.02562 * 4 3 2
7 7 N 1.30696 * 119.02955 * 0.02562 * 6 4 3
8 8 C 1.35302 * 120.56892 * 179.97438 * 7 6 4
9 9 N 1.31848 * 120.59771 * 180.02562 * 8 7 6
10 10 C 1.46499 * 119.99910 * 354.84159 * 9 8 7
11 11 C 1.53004 * 109.46612 * 117.54847 * 10 9 8
12 12 C 1.50701 * 115.55271 * 39.73467 * 11 10 9
13 13 H 1.07995 * 119.99724 * 264.83867 * 12 11 10
14 14 C 1.37882 * 119.99694 * 84.83215 * 12 11 10
15 15 N 1.31504 * 120.00221 * 4.86453 * 14 12 11
16 16 Si 1.86799 * 119.99502 * 184.86436 * 14 12 11
17 17 H 1.48498 * 109.47298 * 60.00002 * 16 14 12
18 18 H 1.48495 * 109.47088 * 180.02562 * 16 14 12
19 19 H 1.48508 * 109.47151 * 299.99845 * 16 14 12
20 20 C 1.52995 * 117.49704 * 254.02264 * 11 10 9
21 21 C 1.52998 * 60.00099 * 252.51289 * 20 11 10
22 22 C 1.46853 * 118.80393 * 359.97438 * 8 7 6
23 23 C 1.35064 * 118.24342 * 0.02562 * 22 8 7
24 24 C 1.50706 * 120.36614 * 180.02562 * 23 22 8
25 25 C 1.53002 * 109.47012 * 359.97438 * 24 23 22
26 26 C 1.52994 * 109.47242 * 119.99905 * 24 23 22
27 27 C 1.53000 * 109.46552 * 239.99733 * 24 23 22
28 28 N 1.36064 * 119.02947 * 179.97438 * 6 4 3
29 29 H 0.97006 * 119.41341 * 0.05011 * 28 6 4
30 30 H 1.08996 * 109.47405 * 59.99763 * 1 2 3
31 31 H 1.09003 * 109.47316 * 179.97438 * 1 2 3
32 32 H 1.08996 * 109.47287 * 299.99530 * 1 2 3
33 33 H 1.09004 * 109.47143 * 240.00811 * 2 1 3
34 34 H 1.08996 * 109.47405 * 120.00237 * 2 1 3
35 35 H 1.09001 * 109.46965 * 237.54600 * 10 9 8
36 36 H 1.09000 * 109.47181 * 357.54811 * 10 9 8
37 37 H 0.97003 * 119.99979 * 184.99740 * 15 14 12
38 38 H 1.08998 * 117.49930 * 0.02562 * 20 11 10
39 39 H 1.08999 * 117.49845 * 145.02977 * 20 11 10
40 40 H 1.08995 * 117.50127 * 252.50896 * 21 20 11
41 41 H 1.09001 * 117.51738 * 107.48207 * 21 20 11
42 42 H 1.08004 * 120.87801 * 180.27630 * 22 8 7
43 43 H 1.08991 * 109.47299 * 60.00259 * 25 24 23
44 44 H 1.09003 * 109.46713 * 180.02562 * 25 24 23
45 45 H 1.09003 * 109.46996 * 299.99730 * 25 24 23
46 46 H 1.08998 * 109.47472 * 59.99273 * 26 24 23
47 47 H 1.08998 * 109.46942 * 179.97438 * 26 24 23
48 48 H 1.09006 * 109.46838 * 299.99641 * 26 24 23
49 49 H 1.08994 * 109.47601 * 59.99982 * 27 24 23
50 50 H 1.09003 * 109.46983 * 180.02562 * 27 24 23
51 51 H 1.09004 * 109.47035 * 299.99534 * 27 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3486 1.5455 -0.0005
5 8 4.0877 0.5832 -0.0015
6 6 3.9168 2.9194 0.0000
7 7 3.1032 3.9422 0.0015
8 6 3.5865 5.2059 0.0026
9 7 2.7662 6.2382 0.0046
10 6 1.3211 6.0256 -0.1083
11 6 0.6300 6.5376 1.1571
12 6 1.1765 7.8238 1.7211
13 1 1.9150 7.7972 2.5086
14 6 0.7336 9.0343 1.2317
15 7 -0.2336 9.0695 0.3414
16 14 1.5076 10.6244 1.8333
17 1 2.9587 10.6190 1.5178
18 1 0.8582 11.7771 1.1591
19 1 1.3208 10.7412 3.3020
20 6 0.1101 5.4952 2.1490
21 6 -0.8742 6.2910 1.2894
22 6 5.0411 5.4071 0.0026
23 6 5.8373 4.3161 0.0010
24 6 7.3368 4.4671 0.0015
25 6 7.6996 5.9535 0.0032
26 6 7.9163 3.7987 1.2497
27 6 7.9166 3.8025 -1.2487
28 7 5.2685 3.0748 0.0000
29 1 5.8384 2.2898 -0.0011
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 -0.0005
32 1 -0.3634 0.5137 0.8900
33 1 1.8933 -0.5137 -0.8901
34 1 1.8933 -0.5138 0.8899
35 1 0.9408 6.5672 -0.9745
36 1 1.1186 4.9613 -0.2277
37 1 -0.4958 9.9143 -0.0567
38 1 0.2608 4.4447 1.9003
39 1 0.1633 5.7395 3.2099
40 1 -1.4684 7.0588 1.7848
41 1 -1.3715 5.7643 0.4749
42 1 5.4632 6.4013 0.0079
43 1 7.2865 6.4273 0.8936
44 1 8.7841 6.0627 0.0031
45 1 7.2868 6.4293 -0.8863
46 1 7.6577 2.7398 1.2481
47 1 9.0008 3.9075 1.2498
48 1 7.5031 4.2722 2.1404
49 1 7.5037 4.2786 -2.1380
50 1 9.0011 3.9113 -1.2482
51 1 7.6580 2.7436 -1.2503
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000343045748.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:16
Heat of formation + Delta-G solvation = 3.410870 kcal
Electronic energy + Delta-G solvation = -31429.973368 eV
Core-core repulsion = 27331.274494 eV
Total energy + Delta-G solvation = -4098.698874 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-41.35359 -40.18509 -37.47226 -37.05501 -36.47526 -34.65169 -32.48875 -31.69278
-31.58843 -30.74469 -27.75245 -27.59438 -26.09651 -25.77959 -24.99655 -23.41275
-22.58988 -21.09953 -20.86092 -19.83725 -18.89029 -18.58187 -17.94257 -17.08530
-16.93313 -16.72228 -15.82072 -15.18695 -15.03936 -14.48892 -14.45152 -14.26898
-14.05422 -13.92711 -13.88205 -13.51629 -13.11610 -12.99037 -12.68081 -12.58095
-12.33665 -12.18793 -12.08772 -11.95745 -11.81416 -11.64856 -11.48983 -11.36073
-11.20881 -11.06139 -11.02382 -10.78136 -10.75572 -10.64529 -10.33497 -10.01205
-9.96045 -9.81322 -9.28133 -8.97037 -8.30787 -8.13254 -7.83189 -6.97220
-5.80252 -3.81547 0.63525 1.67016 1.81102 2.39506 3.18809 3.45511
3.48710 3.53432 3.93014 4.10696 4.12866 4.47694 4.61033 4.65933
4.71136 4.72888 4.84706 4.91037 5.02093 5.26845 5.27116 5.36256
5.41973 5.45717 5.49410 5.52369 5.55017 5.58407 5.60919 5.63045
5.72309 5.77634 5.81321 5.98475 6.02373 6.06326 6.09246 6.27488
6.45939 6.55286 6.74360 6.83203 6.92470 6.95348 7.09484 7.22855
7.28409 7.32539 7.60062 7.75677 8.08948 8.14962 8.61154 8.87461
9.15300 9.80402 11.29518
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007619 B = 0.004239 C = 0.002858
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3674.177668 B = 6603.757334 C = 9796.216978
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.062 3.938
3 O -0.316 6.316
4 C 0.538 3.462
5 O -0.502 6.502
6 C 0.365 3.635
7 N -0.468 5.468
8 C 0.275 3.725
9 N -0.427 5.427
10 C 0.082 3.918
11 C 0.051 3.949
12 C -0.463 4.463
13 H 0.052 0.948
14 C 0.072 3.928
15 N -0.886 5.886
16 Si 0.886 3.114
17 H -0.276 1.276
18 H -0.290 1.290
19 H -0.281 1.281
20 C -0.214 4.214
21 C -0.149 4.149
22 C -0.167 4.167
23 C 0.127 3.873
24 C -0.021 4.021
25 C -0.144 4.144
26 C -0.144 4.144
27 C -0.143 4.143
28 N -0.623 5.623
29 H 0.415 0.585
30 H 0.070 0.930
31 H 0.081 0.919
32 H 0.072 0.928
33 H 0.073 0.927
34 H 0.074 0.926
35 H 0.077 0.923
36 H 0.040 0.960
37 H 0.256 0.744
38 H 0.064 0.936
39 H 0.071 0.929
40 H 0.083 0.917
41 H 0.059 0.941
42 H 0.156 0.844
43 H 0.069 0.931
44 H 0.064 0.936
45 H 0.068 0.932
46 H 0.055 0.945
47 H 0.067 0.933
48 H 0.064 0.936
49 H 0.063 0.937
50 H 0.067 0.933
51 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.150 -18.054 -3.111 23.149
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.012 4.012
3 O -0.230 6.230
4 C 0.378 3.622
5 O -0.389 6.389
6 C 0.086 3.914
7 N -0.197 5.197
8 C -0.002 4.002
9 N -0.143 5.143
10 C -0.048 4.048
11 C 0.050 3.950
12 C -0.501 4.501
13 H 0.071 0.929
14 C -0.129 4.129
15 N -0.525 5.525
16 Si 0.714 3.286
17 H -0.202 1.202
18 H -0.216 1.216
19 H -0.206 1.206
20 C -0.251 4.251
21 C -0.187 4.187
22 C -0.197 4.197
23 C 0.023 3.977
24 C -0.022 4.022
25 C -0.202 4.202
26 C -0.201 4.201
27 C -0.201 4.201
28 N -0.249 5.249
29 H 0.252 0.748
30 H 0.090 0.910
31 H 0.100 0.900
32 H 0.091 0.909
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.095 0.905
36 H 0.058 0.942
37 H 0.066 0.934
38 H 0.082 0.918
39 H 0.090 0.910
40 H 0.102 0.898
41 H 0.078 0.922
42 H 0.173 0.827
43 H 0.088 0.912
44 H 0.083 0.917
45 H 0.087 0.913
46 H 0.074 0.926
47 H 0.086 0.914
48 H 0.083 0.917
49 H 0.082 0.918
50 H 0.086 0.914
51 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 13.012 -16.962 -3.135 21.606
hybrid contribution 1.024 -0.218 0.254 1.077
sum 14.036 -17.180 -2.882 22.371
Atomic orbital electron populations
1.21820 0.91919 1.02976 1.04431 1.23222 0.96055 0.79192 1.02740
1.86719 1.21414 1.32599 1.82225 1.20372 0.81928 0.87032 0.72883
1.90839 1.60760 1.41331 1.45922 1.20457 0.81102 0.92268 0.97594
1.69330 1.34958 1.00066 1.15299 1.21240 0.92585 0.85119 1.01264
1.73402 1.06603 1.25561 1.08728 1.21748 0.85852 0.97662 0.99579
1.18788 0.91758 0.93419 0.91053 1.20170 1.22040 0.88478 1.19458
0.92944 1.24861 0.94167 0.98422 0.95486 1.69996 1.27577 1.25844
1.29054 0.86774 0.79852 0.83395 0.78607 1.20181 1.21581 1.20646
1.23040 1.09416 0.95579 0.97050 1.22464 0.94697 1.01027 1.00530
1.22150 0.91126 0.98659 1.07742 1.20003 0.94253 0.83318 1.00165
1.19601 0.87565 0.98186 0.96875 1.21966 1.01748 0.92936 1.03541
1.21922 1.01241 1.00211 0.96769 1.21922 1.01252 1.00223 0.96690
1.41347 1.04908 1.08824 1.69843 0.74770 0.91046 0.90042 0.90904
0.90864 0.90813 0.90470 0.94217 0.93384 0.91758 0.91046 0.89832
0.92222 0.82696 0.91221 0.91656 0.91343 0.92633 0.91434 0.91663
0.91767 0.91444 0.92640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.28 10.29 37.15 0.38 -0.89 16
2 C 0.06 0.60 6.19 37.15 0.23 0.83 16
3 O -0.32 -4.34 10.01 -40.31 -0.40 -4.75 16
4 C 0.54 7.38 8.00 35.04 0.28 7.66 16
5 O -0.50 -6.64 16.16 -19.14 -0.31 -6.95 16
6 C 0.37 5.47 7.67 -155.28 -1.19 4.28 16
7 N -0.47 -8.81 8.57 -8.93 -0.08 -8.89 16
8 C 0.28 5.61 7.60 -155.84 -1.18 4.42 16
9 N -0.43 -10.39 9.94 -59.17 -0.59 -10.98 16
10 C 0.08 2.08 6.41 -4.04 -0.03 2.05 16
11 C 0.05 1.36 1.85 -155.66 -0.29 1.08 16
12 C -0.46 -13.57 8.16 -34.44 -0.28 -13.85 16
13 H 0.05 1.57 7.82 -52.49 -0.41 1.16 16
14 C 0.07 2.10 5.43 -17.82 -0.10 2.00 16
15 N -0.89 -26.47 12.65 55.43 0.70 -25.77 16
16 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16
17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
18 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16
19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
20 C -0.21 -5.20 9.88 -26.73 -0.26 -5.46 16
21 C -0.15 -3.80 9.18 -26.73 -0.25 -4.04 16
22 C -0.17 -2.66 9.22 -37.23 -0.34 -3.00 16
23 C 0.13 1.55 5.46 -81.62 -0.45 1.10 16
24 C -0.02 -0.18 0.88 -155.66 -0.14 -0.32 16
25 C -0.14 -1.22 7.14 37.16 0.27 -0.95 16
26 C -0.14 -1.06 8.38 37.15 0.31 -0.75 16
27 C -0.14 -1.01 8.38 37.16 0.31 -0.70 16
28 N -0.62 -7.48 5.11 -6.88 -0.04 -7.51 16
29 H 0.42 3.96 6.97 -40.82 -0.28 3.67 16
30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
35 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16
36 H 0.04 0.96 6.54 -51.93 -0.34 0.62 16
37 H 0.26 7.36 8.32 -40.82 -0.34 7.02 16
38 H 0.06 1.47 8.08 -51.93 -0.42 1.05 16
39 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16
40 H 0.08 2.26 8.14 -51.93 -0.42 1.84 16
41 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16
42 H 0.16 2.35 5.95 -52.48 -0.31 2.04 16
43 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16
44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
45 H 0.07 0.61 7.54 -51.93 -0.39 0.22 16
46 H 0.05 0.38 7.60 -51.93 -0.39 -0.02 16
47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
50 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16
51 H 0.05 0.36 7.60 -51.93 -0.39 -0.03 16
LS Contribution 421.34 15.07 6.35 6.35
Total: -1.00 -34.29 421.34 -10.50 -44.79
By element:
Atomic # 1 Polarization: 11.19 SS G_CDS: -8.39 Total: 2.80 kcal
Atomic # 6 Polarization: -3.83 SS G_CDS: -2.72 Total: -6.55 kcal
Atomic # 7 Polarization: -53.15 SS G_CDS: 0.00 Total: -53.15 kcal
Atomic # 8 Polarization: -10.98 SS G_CDS: -0.71 Total: -11.70 kcal
Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal
Total LS contribution 6.35 Total: 6.35 kcal
Total: -34.29 -10.50 -44.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000343045748.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.201 kcal
(2) G-P(sol) polarization free energy of solvation -34.294 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.907 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.411 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds