Wall clock time and date at job start Wed Apr 1 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45200 * 109.46963 * 2 1 4 4 C 1.34630 * 117.00323 * 180.02562 * 3 2 1 5 5 O 1.21339 * 119.99516 * 0.02562 * 4 3 2 6 6 C 1.48674 * 120.00231 * 180.02562 * 4 3 2 7 7 N 1.30696 * 119.02955 * 0.02562 * 6 4 3 8 8 C 1.35302 * 120.56892 * 179.97438 * 7 6 4 9 9 N 1.31848 * 120.59771 * 180.02562 * 8 7 6 10 10 C 1.46499 * 119.99910 * 354.84159 * 9 8 7 11 11 C 1.53004 * 109.46612 * 117.54847 * 10 9 8 12 12 C 1.50701 * 115.55271 * 39.73467 * 11 10 9 13 13 H 1.07995 * 119.99724 * 264.83867 * 12 11 10 14 14 C 1.37882 * 119.99694 * 84.83215 * 12 11 10 15 15 N 1.31504 * 120.00221 * 4.86453 * 14 12 11 16 16 Si 1.86799 * 119.99502 * 184.86436 * 14 12 11 17 17 H 1.48498 * 109.47298 * 60.00002 * 16 14 12 18 18 H 1.48495 * 109.47088 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.47151 * 299.99845 * 16 14 12 20 20 C 1.52995 * 117.49704 * 254.02264 * 11 10 9 21 21 C 1.52998 * 60.00099 * 252.51289 * 20 11 10 22 22 C 1.46853 * 118.80393 * 359.97438 * 8 7 6 23 23 C 1.35064 * 118.24342 * 0.02562 * 22 8 7 24 24 C 1.50706 * 120.36614 * 180.02562 * 23 22 8 25 25 C 1.53002 * 109.47012 * 359.97438 * 24 23 22 26 26 C 1.52994 * 109.47242 * 119.99905 * 24 23 22 27 27 C 1.53000 * 109.46552 * 239.99733 * 24 23 22 28 28 N 1.36064 * 119.02947 * 179.97438 * 6 4 3 29 29 H 0.97006 * 119.41341 * 0.05011 * 28 6 4 30 30 H 1.08996 * 109.47405 * 59.99763 * 1 2 3 31 31 H 1.09003 * 109.47316 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47287 * 299.99530 * 1 2 3 33 33 H 1.09004 * 109.47143 * 240.00811 * 2 1 3 34 34 H 1.08996 * 109.47405 * 120.00237 * 2 1 3 35 35 H 1.09001 * 109.46965 * 237.54600 * 10 9 8 36 36 H 1.09000 * 109.47181 * 357.54811 * 10 9 8 37 37 H 0.97003 * 119.99979 * 184.99740 * 15 14 12 38 38 H 1.08998 * 117.49930 * 0.02562 * 20 11 10 39 39 H 1.08999 * 117.49845 * 145.02977 * 20 11 10 40 40 H 1.08995 * 117.50127 * 252.50896 * 21 20 11 41 41 H 1.09001 * 117.51738 * 107.48207 * 21 20 11 42 42 H 1.08004 * 120.87801 * 180.27630 * 22 8 7 43 43 H 1.08991 * 109.47299 * 60.00259 * 25 24 23 44 44 H 1.09003 * 109.46713 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.46996 * 299.99730 * 25 24 23 46 46 H 1.08998 * 109.47472 * 59.99273 * 26 24 23 47 47 H 1.08998 * 109.46942 * 179.97438 * 26 24 23 48 48 H 1.09006 * 109.46838 * 299.99641 * 26 24 23 49 49 H 1.08994 * 109.47601 * 59.99982 * 27 24 23 50 50 H 1.09003 * 109.46983 * 180.02562 * 27 24 23 51 51 H 1.09004 * 109.47035 * 299.99534 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3486 1.5455 -0.0005 5 8 4.0877 0.5832 -0.0015 6 6 3.9168 2.9194 0.0000 7 7 3.1032 3.9422 0.0015 8 6 3.5865 5.2059 0.0026 9 7 2.7662 6.2382 0.0046 10 6 1.3211 6.0256 -0.1083 11 6 0.6300 6.5376 1.1571 12 6 1.1765 7.8238 1.7211 13 1 1.9150 7.7972 2.5086 14 6 0.7336 9.0343 1.2317 15 7 -0.2336 9.0695 0.3414 16 14 1.5076 10.6244 1.8333 17 1 2.9587 10.6190 1.5178 18 1 0.8582 11.7771 1.1591 19 1 1.3208 10.7412 3.3020 20 6 0.1101 5.4952 2.1490 21 6 -0.8742 6.2910 1.2894 22 6 5.0411 5.4071 0.0026 23 6 5.8373 4.3161 0.0010 24 6 7.3368 4.4671 0.0015 25 6 7.6996 5.9535 0.0032 26 6 7.9163 3.7987 1.2497 27 6 7.9166 3.8025 -1.2487 28 7 5.2685 3.0748 0.0000 29 1 5.8384 2.2898 -0.0011 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.9408 6.5672 -0.9745 36 1 1.1186 4.9613 -0.2277 37 1 -0.4958 9.9143 -0.0567 38 1 0.2608 4.4447 1.9003 39 1 0.1633 5.7395 3.2099 40 1 -1.4684 7.0588 1.7848 41 1 -1.3715 5.7643 0.4749 42 1 5.4632 6.4013 0.0079 43 1 7.2865 6.4273 0.8936 44 1 8.7841 6.0627 0.0031 45 1 7.2868 6.4293 -0.8863 46 1 7.6577 2.7398 1.2481 47 1 9.0008 3.9075 1.2498 48 1 7.5031 4.2722 2.1404 49 1 7.5037 4.2786 -2.1380 50 1 9.0011 3.9113 -1.2482 51 1 7.6580 2.7436 -1.2503 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343045748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:15 Heat of formation + Delta-G solvation = -16.336672 kcal Electronic energy + Delta-G solvation = -31430.829686 eV Core-core repulsion = 27331.274494 eV Total energy + Delta-G solvation = -4099.555191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55682 -41.28370 -38.83951 -38.17801 -37.96835 -36.09351 -33.90060 -33.63228 -32.55101 -32.04758 -28.64610 -28.16258 -27.87133 -27.00751 -26.82882 -24.44737 -23.62039 -22.90241 -22.30352 -21.03249 -20.79203 -19.74507 -19.01283 -18.52382 -17.95526 -17.84799 -17.64722 -16.65005 -16.30724 -16.24008 -15.67404 -15.41117 -15.21394 -14.98612 -14.83571 -14.78350 -14.58041 -14.21151 -13.99015 -13.66381 -13.54635 -13.26440 -13.05921 -12.94378 -12.89522 -12.77735 -12.58832 -12.57602 -12.53344 -12.39606 -12.35507 -12.26407 -12.01210 -11.96722 -11.75548 -11.61304 -11.45700 -11.20197 -11.02708 -11.00541 -10.36271 -9.95135 -9.83548 -8.47022 -8.01084 -6.07819 -0.62753 0.41928 0.70407 1.18645 1.39915 1.43817 1.50784 2.05324 2.49232 2.71518 2.79544 3.09397 3.28319 3.50194 3.58012 3.85089 3.91765 3.97452 3.98947 4.00402 4.18059 4.28563 4.31794 4.40301 4.55115 4.62318 4.68937 4.74972 4.75293 4.82205 4.88211 4.88476 4.91241 4.96186 4.98100 5.00213 5.01175 5.05949 5.11173 5.21920 5.26325 5.29244 5.30715 5.36917 5.40028 5.56442 5.60580 5.69664 5.83013 5.96889 6.21025 6.48078 6.80700 6.89897 7.30294 7.55789 9.08239 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007619 B = 0.004239 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3674.177668 B = 6603.757334 C = 9796.216978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.336 6.336 4 C 0.542 3.458 5 O -0.492 6.492 6 C 0.381 3.619 7 N -0.518 5.518 8 C 0.299 3.701 9 N -0.511 5.511 10 C 0.107 3.893 11 C 0.022 3.978 12 C -0.473 4.473 13 H 0.035 0.965 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.946 3.054 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.190 4.190 21 C -0.148 4.148 22 C -0.209 4.209 23 C 0.170 3.830 24 C -0.019 4.019 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.142 4.142 28 N -0.598 5.598 29 H 0.434 0.566 30 H 0.062 0.938 31 H 0.112 0.888 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.036 0.964 36 H 0.040 0.960 37 H 0.256 0.744 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.157 0.843 43 H 0.055 0.945 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.052 0.948 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.483 -20.848 -2.863 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.249 6.249 4 C 0.382 3.618 5 O -0.378 6.378 6 C 0.102 3.898 7 N -0.247 5.247 8 C 0.023 3.977 9 N -0.229 5.229 10 C -0.023 4.023 11 C 0.021 3.979 12 C -0.511 4.511 13 H 0.053 0.947 14 C -0.174 4.174 15 N -0.553 5.553 16 Si 0.772 3.228 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.227 4.227 21 C -0.186 4.186 22 C -0.239 4.239 23 C 0.063 3.937 24 C -0.020 4.020 25 C -0.204 4.204 26 C -0.201 4.201 27 C -0.200 4.200 28 N -0.223 5.223 29 H 0.275 0.725 30 H 0.081 0.919 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.175 0.825 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.111 0.889 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.378 -19.831 -2.877 25.880 hybrid contribution 0.263 0.279 0.163 0.417 sum 16.641 -19.552 -2.714 25.818 Atomic orbital electron populations 1.21870 0.91024 1.04630 1.03390 1.23597 0.96799 0.77427 1.04083 1.86720 1.21123 1.35232 1.81838 1.20051 0.82298 0.86225 0.73252 1.90846 1.60661 1.40682 1.45594 1.20893 0.81814 0.92563 0.94490 1.69296 1.36230 1.00183 1.19032 1.21757 0.93916 0.85266 0.96756 1.73374 1.05364 1.27196 1.16997 1.21213 0.87635 0.96457 0.97012 1.18983 0.92360 0.93730 0.92783 1.20279 1.21567 0.90081 1.19169 0.94692 1.25550 0.94677 1.01376 0.95755 1.70109 1.28622 1.26415 1.30131 0.85815 0.78888 0.79701 0.78397 1.20062 1.20792 1.19838 1.22945 1.07487 0.95869 0.96411 1.22330 0.94225 1.00966 1.01096 1.22132 0.89424 1.00253 1.12054 1.20658 0.96166 0.82091 0.94798 1.19820 0.84229 0.98981 0.98933 1.22002 1.03375 0.92510 1.02535 1.21959 1.02777 1.00364 0.94998 1.21953 1.02749 1.00375 0.94890 1.41564 1.04464 1.09819 1.66443 0.72513 0.91925 0.86992 0.92095 0.89340 0.89542 0.94552 0.94200 0.93494 0.90130 0.91150 0.91910 0.91121 0.82543 0.92577 0.88985 0.92219 0.91575 0.88871 0.92923 0.92616 0.88931 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.29 71.98 0.74 -1.54 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.34 -8.80 10.01 -55.39 -0.55 -9.35 16 4 C 0.54 13.77 8.00 70.61 0.56 14.34 16 5 O -0.49 -11.37 16.16 20.35 0.33 -11.04 16 6 C 0.38 10.92 7.67 137.12 1.05 11.97 16 7 N -0.52 -19.77 8.57 -182.18 -1.56 -21.33 16 8 C 0.30 12.66 7.60 136.49 1.04 13.70 16 9 N -0.51 -26.50 9.94 -341.12 -3.39 -29.89 16 10 C 0.11 5.84 6.41 86.38 0.55 6.40 16 11 C 0.02 1.26 1.85 -52.93 -0.10 1.16 16 12 C -0.47 -29.00 8.16 25.60 0.21 -28.79 16 13 H 0.03 2.20 7.82 -2.91 -0.02 2.17 16 14 C 0.02 1.50 5.43 84.66 0.46 1.96 16 15 N -0.91 -56.90 12.65 21.45 0.27 -56.62 16 16 Si 0.95 47.67 29.54 68.60 2.03 49.70 16 17 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 18 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 19 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 20 C -0.19 -9.50 9.88 30.59 0.30 -9.20 16 21 C -0.15 -7.87 9.18 30.59 0.28 -7.59 16 22 C -0.21 -6.71 9.22 23.79 0.22 -6.49 16 23 C 0.17 3.80 5.46 41.10 0.22 4.03 16 24 C -0.02 -0.26 0.88 -52.93 -0.05 -0.30 16 25 C -0.15 -2.15 7.14 71.98 0.51 -1.63 16 26 C -0.14 -1.52 8.38 71.98 0.60 -0.92 16 27 C -0.14 -1.39 8.38 71.98 0.60 -0.79 16 28 N -0.60 -12.76 5.11 -175.69 -0.90 -13.66 16 29 H 0.43 6.44 6.97 -92.70 -0.65 5.80 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.04 2.06 6.54 -2.39 -0.02 2.04 16 37 H 0.26 15.25 8.32 -92.71 -0.77 14.48 16 38 H 0.08 3.72 8.08 -2.39 -0.02 3.70 16 39 H 0.07 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.06 3.55 8.14 -2.39 -0.02 3.53 16 41 H 0.07 3.52 8.14 -2.39 -0.02 3.50 16 42 H 0.16 4.94 5.95 -2.91 -0.02 4.92 16 43 H 0.06 0.99 7.53 -2.39 -0.02 0.97 16 44 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 0.99 7.54 -2.39 -0.02 0.97 16 46 H 0.07 0.58 7.60 -2.39 -0.02 0.56 16 47 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.07 0.53 7.60 -2.39 -0.02 0.51 16 Total: -1.00 -79.71 421.34 4.17 -75.54 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.28 Total: 19.01 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 7.67 Total: -2.34 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -5.58 Total: -121.51 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.23 Total: -20.39 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -79.71 4.17 -75.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343045748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.201 kcal (2) G-P(sol) polarization free energy of solvation -79.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds