Wall clock time and date at job start Wed Apr 1 2020 04:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46972 * 2 1 4 4 C 1.35420 * 117.00033 * 179.97438 * 3 2 1 5 5 N 1.32236 * 119.80200 * 359.97438 * 4 3 2 6 6 C 1.31875 * 121.80040 * 180.02562 * 5 4 3 7 7 C 1.38359 * 121.18820 * 359.74152 * 6 5 4 8 8 C 1.38328 * 119.45470 * 0.51060 * 7 6 5 9 9 C 1.50709 * 120.82481 * 179.77547 * 8 7 6 10 10 C 1.39988 * 118.35314 * 359.50464 * 8 7 6 11 11 C 1.47520 * 120.60185 * 180.27022 * 10 8 7 12 12 O 1.21592 * 119.99913 * 89.99259 * 11 10 8 13 13 N 1.34768 * 120.00303 * 270.00211 * 11 10 8 14 14 C 1.46497 * 120.00223 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47434 * 180.02562 * 14 13 11 16 16 C 1.53045 * 109.45566 * 295.02590 * 15 14 13 17 17 C 1.53188 * 109.30915 * 178.60049 * 16 15 14 18 18 N 1.46925 * 108.76806 * 54.65808 * 17 16 15 19 19 C 1.36938 * 120.63160 * 126.40453 * 18 17 16 20 20 H 1.07992 * 120.00191 * 332.60885 * 19 18 17 21 21 C 1.38812 * 119.99820 * 152.60824 * 19 18 17 22 22 N 1.31621 * 120.00138 * 159.34183 * 21 19 18 23 23 Si 1.86808 * 120.00043 * 339.34147 * 21 19 18 24 24 H 1.48499 * 109.47013 * 92.94153 * 23 21 19 25 25 H 1.48495 * 109.47027 * 212.94494 * 23 21 19 26 26 H 1.48501 * 109.46911 * 332.94453 * 23 21 19 27 27 C 1.46927 * 118.73459 * 306.37633 * 18 17 16 28 28 C 1.53034 * 109.46402 * 174.97276 * 15 14 13 29 29 H 1.08996 * 109.47130 * 299.99894 * 1 2 3 30 30 H 1.09002 * 109.47137 * 59.99872 * 1 2 3 31 31 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46951 * 240.00618 * 2 1 3 33 33 H 1.08994 * 109.47076 * 119.99834 * 2 1 3 34 34 H 1.08007 * 119.40658 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.26736 * 180.26902 * 7 6 5 36 36 H 1.09004 * 109.46896 * 269.72484 * 9 8 7 37 37 H 1.08993 * 109.47012 * 149.72386 * 9 8 7 38 38 H 1.09000 * 109.47144 * 29.71877 * 9 8 7 39 39 H 0.96997 * 120.00092 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46967 * 299.99499 * 14 13 11 41 41 H 1.08997 * 109.47640 * 59.99631 * 14 13 11 42 42 H 1.08995 * 109.46173 * 54.99364 * 15 14 13 43 43 H 1.09001 * 109.49829 * 298.56416 * 16 15 14 44 44 H 1.08997 * 109.49924 * 58.66009 * 16 15 14 45 45 H 1.09003 * 109.60180 * 294.86244 * 17 16 15 46 46 H 1.09008 * 109.69887 * 174.50539 * 17 16 15 47 47 H 0.96998 * 119.99849 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.59196 * 293.82533 * 27 18 17 49 49 H 1.09003 * 109.70014 * 173.46708 * 27 18 17 50 50 H 1.09001 * 109.49729 * 301.33271 * 28 15 14 51 51 H 1.08996 * 109.49939 * 61.42927 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4634 0.6005 0.0026 7 6 6.0624 1.8476 -0.0026 8 6 5.2713 2.9823 0.0016 9 6 5.8911 4.3560 0.0012 10 6 3.8805 2.8230 0.0005 11 6 2.9899 3.9990 -0.0010 12 8 2.6239 4.4830 -1.0547 13 7 2.5821 4.5371 1.1653 14 6 1.6981 5.7053 1.1637 15 6 1.3893 6.1133 2.6057 16 6 0.5909 5.0015 3.2902 17 6 0.3138 5.3981 4.7437 18 7 -0.3459 6.7108 4.7579 19 6 -1.5327 6.8882 5.4177 20 1 -2.2081 6.0556 5.5473 21 6 -1.8675 8.1382 5.9199 22 7 -3.1248 8.4275 6.1807 23 14 -0.5337 9.4099 6.2256 24 1 -0.3896 10.2741 5.0266 25 1 -0.9049 10.2449 7.3960 26 1 0.7537 8.7214 6.4971 27 6 0.2923 7.8298 4.0512 28 6 0.5699 7.4058 2.6056 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 6.0820 -0.2849 0.0038 35 1 7.1389 1.9344 -0.0061 36 1 6.0397 4.6878 1.0288 37 1 5.2298 5.0528 -0.5136 38 1 6.8523 4.3207 -0.5117 39 1 2.8738 4.1509 2.0059 40 1 2.1892 6.5318 0.6500 41 1 0.7697 5.4579 0.6491 42 1 2.3226 6.2750 3.1451 43 1 -0.3537 4.8564 2.7661 44 1 1.1652 4.0753 3.2692 45 1 1.2537 5.4555 5.2926 46 1 -0.3365 4.6573 5.2091 47 1 -3.3587 9.3009 6.5320 48 1 1.2305 8.0855 4.5436 49 1 -0.3712 8.6946 4.0574 50 1 1.1293 8.1912 2.0972 51 1 -0.3745 7.2378 2.0880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000433981383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:49 Heat of formation + Delta-G solvation = -26.713184 kcal Electronic energy + Delta-G solvation = -31124.429264 eV Core-core repulsion = 27024.424113 eV Total energy + Delta-G solvation = -4100.005151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.28219 -39.47544 -38.47800 -38.00768 -35.09102 -34.26866 -32.90412 -32.38692 -31.13336 -30.43495 -30.26108 -28.52695 -27.08191 -24.73184 -23.88779 -23.62096 -22.74296 -21.97531 -21.27174 -20.66127 -19.42852 -18.39213 -17.90295 -17.42994 -16.77862 -16.67829 -16.02145 -15.56465 -15.19925 -15.06771 -14.47870 -14.45448 -14.16123 -14.15236 -13.85628 -13.57906 -13.51650 -13.29675 -13.22319 -13.04296 -12.84213 -12.81458 -12.51653 -12.32961 -12.30228 -12.01495 -11.80217 -11.78088 -11.40095 -11.05150 -10.83535 -10.63595 -10.53226 -10.48233 -10.13433 -10.00184 -9.87718 -9.78631 -9.63175 -9.42150 -9.07018 -8.87715 -8.61632 -6.97238 -5.94531 -3.30073 0.54611 0.85135 2.45273 2.63537 3.06241 3.31257 3.31769 3.47928 3.50663 3.90107 4.24897 4.49984 4.53056 4.54351 4.68496 4.75067 4.80225 4.92812 4.96684 5.04803 5.09195 5.10295 5.13048 5.16770 5.23085 5.38518 5.43110 5.43751 5.57877 5.59218 5.70744 5.76379 5.81261 5.83781 5.88938 5.94439 6.02560 6.06504 6.18136 6.27788 6.38820 6.42417 6.50093 6.63567 6.65354 6.71090 6.89373 6.97316 7.37818 7.43555 7.97117 8.10465 8.33476 8.94979 9.72764 10.10779 11.21600 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.002578 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.012195 B =10857.667576 C =11888.480417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 O -0.297 6.297 4 C 0.361 3.639 5 N -0.544 5.544 6 C 0.158 3.842 7 C -0.217 4.217 8 C 0.028 3.972 9 C -0.126 4.126 10 C -0.203 4.203 11 C 0.578 3.422 12 O -0.532 6.532 13 N -0.713 5.713 14 C 0.124 3.876 15 C -0.091 4.091 16 C -0.129 4.129 17 C 0.149 3.851 18 N -0.606 5.606 19 C -0.259 4.259 20 H 0.085 0.915 21 C 0.022 3.978 22 N -0.909 5.909 23 Si 0.883 3.117 24 H -0.288 1.288 25 H -0.304 1.304 26 H -0.271 1.271 27 C 0.127 3.873 28 C -0.126 4.126 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.164 0.836 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.051 0.949 45 H 0.020 0.980 46 H 0.062 0.938 47 H 0.262 0.738 48 H 0.024 0.976 49 H 0.073 0.927 50 H 0.056 0.944 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.725 -15.960 -13.043 28.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 O -0.203 6.203 4 C 0.181 3.819 5 N -0.268 5.268 6 C 0.002 3.998 7 C -0.237 4.237 8 C 0.020 3.980 9 C -0.182 4.182 10 C -0.210 4.210 11 C 0.363 3.637 12 O -0.408 6.408 13 N -0.364 5.364 14 C 0.001 3.999 15 C -0.110 4.110 16 C -0.168 4.168 17 C 0.023 3.977 18 N -0.330 5.330 19 C -0.387 4.387 20 H 0.102 0.898 21 C -0.177 4.177 22 N -0.552 5.552 23 Si 0.714 3.286 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.196 1.196 27 C 0.001 3.999 28 C -0.166 4.166 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.042 0.958 49 H 0.091 0.909 50 H 0.074 0.926 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.662 -16.121 -13.712 28.217 hybrid contribution 1.237 1.082 0.604 1.751 sum 19.900 -15.039 -13.108 28.178 Atomic orbital electron populations 1.21843 0.92590 1.03005 1.03854 1.22691 0.95170 0.80378 1.02517 1.86275 1.16162 1.31324 1.86539 1.19667 0.84458 0.88311 0.89435 1.67418 1.06620 1.32232 1.20535 1.22574 0.89102 0.97480 0.90653 1.21808 1.01438 0.92401 1.08084 1.20178 0.90404 0.97075 0.90368 1.20958 1.01594 0.91971 1.03683 1.19757 0.94170 0.92424 1.14602 1.17678 0.79668 0.82230 0.84171 1.90809 1.56656 1.62132 1.31234 1.46044 1.50049 1.32199 1.08120 1.21585 0.93683 0.86731 0.97949 1.21303 0.99271 0.96978 0.93406 1.22070 0.99756 0.96058 0.98902 1.20908 0.95734 0.88202 0.92870 1.44353 1.24301 1.05381 1.58941 1.18925 0.92725 0.97379 1.29703 0.89763 1.25284 0.95975 0.97583 0.98816 1.69841 1.15780 1.22048 1.47532 0.86940 0.83377 0.81535 0.76747 1.21608 1.23227 1.19641 1.21317 0.96408 0.92107 0.90063 1.21993 0.99665 0.95253 0.99643 0.91244 0.91493 0.90118 0.91513 0.91338 0.81889 0.83898 0.89540 0.90397 0.90027 0.76472 0.91562 0.91183 0.91187 0.91609 0.93050 0.96191 0.91937 0.92787 0.95835 0.90870 0.92555 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.07 0.66 6.03 37.16 0.22 0.88 16 3 O -0.30 -3.83 9.57 -17.95 -0.17 -4.00 16 4 C 0.36 4.45 7.51 -16.61 -0.12 4.33 16 5 N -0.54 -5.78 9.21 -12.98 -0.12 -5.90 16 6 C 0.16 1.21 11.17 -17.49 -0.20 1.02 16 7 C -0.22 -1.54 9.79 -39.50 -0.39 -1.93 16 8 C 0.03 0.26 5.95 -103.93 -0.62 -0.36 16 9 C -0.13 -0.93 9.69 36.01 0.35 -0.58 16 10 C -0.20 -2.46 5.66 -104.69 -0.59 -3.05 16 11 C 0.58 8.09 5.42 -12.48 -0.07 8.02 16 12 O -0.53 -9.40 17.11 5.28 0.09 -9.31 16 13 N -0.71 -8.78 5.27 -61.35 -0.32 -9.10 16 14 C 0.12 1.66 5.06 -4.04 -0.02 1.64 16 15 C -0.09 -1.31 2.19 -90.58 -0.20 -1.51 16 16 C -0.13 -2.00 5.25 -26.61 -0.14 -2.14 16 17 C 0.15 2.83 6.52 -3.71 -0.02 2.81 16 18 N -0.61 -14.17 2.77 -172.32 -0.48 -14.65 16 19 C -0.26 -7.22 10.04 -15.06 -0.15 -7.37 16 20 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 21 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 22 N -0.91 -27.93 13.97 55.49 0.78 -27.15 16 23 Si 0.88 22.32 24.35 -169.99 -4.14 18.18 16 24 H -0.29 -7.02 6.62 56.52 0.37 -6.64 16 25 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 26 H -0.27 -6.71 6.63 56.52 0.37 -6.33 16 27 C 0.13 2.70 4.20 -3.71 -0.02 2.68 16 28 C -0.13 -2.14 5.36 -26.61 -0.14 -2.28 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 33 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.16 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.73 7.19 -51.93 -0.37 0.35 16 38 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 39 H 0.40 4.24 7.63 -40.82 -0.31 3.93 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.67 7.15 -51.93 -0.37 0.30 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 1.20 7.93 -51.92 -0.41 0.79 16 47 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 48 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 49 H 0.07 1.73 4.50 -51.93 -0.23 1.50 16 50 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -34.66 405.76 -8.50 -43.16 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -8.44 Total: 0.86 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.81 Total: 1.80 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.14 Total: -56.80 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.08 Total: -13.31 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.66 -8.50 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433981383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.445 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds