Wall clock time and date at job start Wed Apr 1 2020 04:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46972 * 2 1 4 4 C 1.35420 * 117.00033 * 179.97438 * 3 2 1 5 5 N 1.32236 * 119.80200 * 359.97438 * 4 3 2 6 6 C 1.31875 * 121.80040 * 180.02562 * 5 4 3 7 7 C 1.38359 * 121.18820 * 359.74152 * 6 5 4 8 8 C 1.38328 * 119.45470 * 0.51060 * 7 6 5 9 9 C 1.50709 * 120.82481 * 179.77547 * 8 7 6 10 10 C 1.39988 * 118.35314 * 359.50464 * 8 7 6 11 11 C 1.47520 * 120.60185 * 180.27022 * 10 8 7 12 12 O 1.21592 * 119.99913 * 89.99259 * 11 10 8 13 13 N 1.34768 * 120.00303 * 270.00211 * 11 10 8 14 14 C 1.46497 * 120.00223 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47434 * 180.02562 * 14 13 11 16 16 C 1.53045 * 109.45566 * 295.02590 * 15 14 13 17 17 C 1.53188 * 109.30915 * 178.60049 * 16 15 14 18 18 N 1.46925 * 108.76806 * 54.65808 * 17 16 15 19 19 C 1.36938 * 120.63160 * 126.40453 * 18 17 16 20 20 H 1.07992 * 120.00191 * 332.60885 * 19 18 17 21 21 C 1.38812 * 119.99820 * 152.60824 * 19 18 17 22 22 N 1.31621 * 120.00138 * 159.34183 * 21 19 18 23 23 Si 1.86808 * 120.00043 * 339.34147 * 21 19 18 24 24 H 1.48499 * 109.47013 * 92.94153 * 23 21 19 25 25 H 1.48495 * 109.47027 * 212.94494 * 23 21 19 26 26 H 1.48501 * 109.46911 * 332.94453 * 23 21 19 27 27 C 1.46927 * 118.73459 * 306.37633 * 18 17 16 28 28 C 1.53034 * 109.46402 * 174.97276 * 15 14 13 29 29 H 1.08996 * 109.47130 * 299.99894 * 1 2 3 30 30 H 1.09002 * 109.47137 * 59.99872 * 1 2 3 31 31 H 1.09005 * 109.46938 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46951 * 240.00618 * 2 1 3 33 33 H 1.08994 * 109.47076 * 119.99834 * 2 1 3 34 34 H 1.08007 * 119.40658 * 179.97438 * 6 5 4 35 35 H 1.07999 * 120.26736 * 180.26902 * 7 6 5 36 36 H 1.09004 * 109.46896 * 269.72484 * 9 8 7 37 37 H 1.08993 * 109.47012 * 149.72386 * 9 8 7 38 38 H 1.09000 * 109.47144 * 29.71877 * 9 8 7 39 39 H 0.96997 * 120.00092 * 359.97438 * 13 11 10 40 40 H 1.09005 * 109.46967 * 299.99499 * 14 13 11 41 41 H 1.08997 * 109.47640 * 59.99631 * 14 13 11 42 42 H 1.08995 * 109.46173 * 54.99364 * 15 14 13 43 43 H 1.09001 * 109.49829 * 298.56416 * 16 15 14 44 44 H 1.08997 * 109.49924 * 58.66009 * 16 15 14 45 45 H 1.09003 * 109.60180 * 294.86244 * 17 16 15 46 46 H 1.09008 * 109.69887 * 174.50539 * 17 16 15 47 47 H 0.96998 * 119.99849 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.59196 * 293.82533 * 27 18 17 49 49 H 1.09003 * 109.70014 * 173.46708 * 27 18 17 50 50 H 1.09001 * 109.49729 * 301.33271 * 28 15 14 51 51 H 1.08996 * 109.49939 * 61.42927 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4733 0.0015 6 6 5.4634 0.6005 0.0026 7 6 6.0624 1.8476 -0.0026 8 6 5.2713 2.9823 0.0016 9 6 5.8911 4.3560 0.0012 10 6 3.8805 2.8230 0.0005 11 6 2.9899 3.9990 -0.0010 12 8 2.6239 4.4830 -1.0547 13 7 2.5821 4.5371 1.1653 14 6 1.6981 5.7053 1.1637 15 6 1.3893 6.1133 2.6057 16 6 0.5909 5.0015 3.2902 17 6 0.3138 5.3981 4.7437 18 7 -0.3459 6.7108 4.7579 19 6 -1.5327 6.8882 5.4177 20 1 -2.2081 6.0556 5.5473 21 6 -1.8675 8.1382 5.9199 22 7 -3.1248 8.4275 6.1807 23 14 -0.5337 9.4099 6.2256 24 1 -0.3896 10.2741 5.0266 25 1 -0.9049 10.2449 7.3960 26 1 0.7537 8.7214 6.4971 27 6 0.2923 7.8298 4.0512 28 6 0.5699 7.4058 2.6056 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 6.0820 -0.2849 0.0038 35 1 7.1389 1.9344 -0.0061 36 1 6.0397 4.6878 1.0288 37 1 5.2298 5.0528 -0.5136 38 1 6.8523 4.3207 -0.5117 39 1 2.8738 4.1509 2.0059 40 1 2.1892 6.5318 0.6500 41 1 0.7697 5.4579 0.6491 42 1 2.3226 6.2750 3.1451 43 1 -0.3537 4.8564 2.7661 44 1 1.1652 4.0753 3.2692 45 1 1.2537 5.4555 5.2926 46 1 -0.3365 4.6573 5.2091 47 1 -3.3587 9.3009 6.5320 48 1 1.2305 8.0855 4.5436 49 1 -0.3712 8.6946 4.0574 50 1 1.1293 8.1912 2.0972 51 1 -0.3745 7.2378 2.0880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000433981383.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:48 Heat of formation + Delta-G solvation = -52.019722 kcal Electronic energy + Delta-G solvation = -31125.526638 eV Core-core repulsion = 27024.424113 eV Total energy + Delta-G solvation = -4101.102524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.06264 -40.54935 -39.53295 -39.14789 -36.51073 -34.99154 -34.48849 -33.24893 -32.78170 -31.89233 -31.13824 -29.20172 -28.46838 -25.98253 -25.00350 -24.58365 -24.16110 -22.90077 -22.62603 -21.66174 -20.87623 -19.15218 -18.98267 -18.59696 -18.16400 -17.57064 -17.23604 -16.98117 -16.25441 -16.05683 -15.88478 -15.43877 -15.24635 -15.17363 -15.10516 -14.99244 -14.71020 -14.46748 -14.15322 -14.07765 -13.95542 -13.67205 -13.59092 -13.44697 -13.41173 -13.20950 -12.95556 -12.89536 -12.54971 -12.52266 -12.25637 -12.13643 -11.79093 -11.76313 -11.59439 -11.49958 -11.23745 -11.22000 -10.72682 -10.63995 -10.55394 -10.16563 -9.59180 -8.92285 -8.16245 -5.47720 -0.14420 0.18148 1.30843 1.41652 1.42564 1.51350 1.90525 2.10190 2.42466 2.61680 3.06201 3.24239 3.36867 3.67052 3.68395 3.77639 3.84553 3.86039 3.94520 4.02838 4.09310 4.10947 4.37192 4.37973 4.42260 4.43387 4.53311 4.58774 4.61271 4.67544 4.70567 4.75595 4.77392 4.81264 4.87287 4.87974 4.99694 5.05538 5.07816 5.15185 5.15923 5.18930 5.21773 5.26565 5.32866 5.45324 5.57398 5.87532 6.13003 6.14908 6.41261 6.72858 6.93429 7.09234 7.64084 8.03913 9.03955 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.002578 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.012195 B =10857.667576 C =11888.480417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.324 6.324 4 C 0.340 3.660 5 N -0.557 5.557 6 C 0.157 3.843 7 C -0.203 4.203 8 C 0.023 3.977 9 C -0.123 4.123 10 C -0.230 4.230 11 C 0.583 3.417 12 O -0.578 6.578 13 N -0.702 5.702 14 C 0.134 3.866 15 C -0.078 4.078 16 C -0.118 4.118 17 C 0.144 3.856 18 N -0.622 5.622 19 C -0.249 4.249 20 H 0.047 0.953 21 C -0.039 4.039 22 N -0.960 5.960 23 Si 0.951 3.049 24 H -0.274 1.274 25 H -0.313 1.313 26 H -0.257 1.257 27 C 0.120 3.880 28 C -0.120 4.120 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.202 0.798 35 H 0.182 0.818 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.107 0.893 39 H 0.412 0.588 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.041 0.959 46 H 0.050 0.950 47 H 0.261 0.739 48 H 0.039 0.961 49 H 0.047 0.953 50 H 0.085 0.915 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.371 -16.887 -13.553 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.231 6.231 4 C 0.161 3.839 5 N -0.282 5.282 6 C 0.001 3.999 7 C -0.222 4.222 8 C 0.015 3.985 9 C -0.180 4.180 10 C -0.236 4.236 11 C 0.368 3.632 12 O -0.458 6.458 13 N -0.353 5.353 14 C 0.011 3.989 15 C -0.097 4.097 16 C -0.157 4.157 17 C 0.019 3.981 18 N -0.346 5.346 19 C -0.379 4.379 20 H 0.065 0.935 21 C -0.234 4.234 22 N -0.607 5.607 23 Si 0.780 3.220 24 H -0.200 1.200 25 H -0.242 1.242 26 H -0.181 1.181 27 C -0.005 4.005 28 C -0.160 4.160 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.123 0.877 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.218 0.782 35 H 0.200 0.800 36 H 0.120 0.880 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.248 0.752 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.100 0.900 45 H 0.059 0.941 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.104 0.896 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 23.363 -17.085 -14.222 32.249 hybrid contribution -0.167 1.215 0.731 1.428 sum 23.196 -15.870 -13.491 31.176 Atomic orbital electron populations 1.21861 0.91929 1.04302 1.02824 1.22806 0.95667 0.79551 1.02796 1.86236 1.17112 1.32789 1.86958 1.19828 0.84467 0.88898 0.90720 1.67474 1.07941 1.31691 1.21066 1.23328 0.88373 0.99361 0.88809 1.22232 1.03128 0.91185 1.05680 1.20518 0.89402 0.98793 0.89739 1.21009 1.01995 0.90344 1.04612 1.19759 0.95189 0.91380 1.17292 1.17996 0.79225 0.82323 0.83608 1.90775 1.58480 1.63706 1.32816 1.45914 1.49305 1.31651 1.08398 1.21350 0.93229 0.87390 0.96959 1.21175 0.99399 0.95076 0.94019 1.21933 0.99561 0.97895 0.96280 1.21099 0.95839 0.85892 0.95265 1.44498 1.23523 1.07567 1.59055 1.18861 0.93796 0.96190 1.29012 0.93496 1.25957 0.97861 1.00084 0.99462 1.69985 1.17978 1.22824 1.49882 0.85842 0.80743 0.78967 0.76477 1.20032 1.24234 1.18076 1.21400 0.95948 0.90651 0.92467 1.21886 0.99858 0.97506 0.96703 0.92205 0.92480 0.87663 0.91345 0.90803 0.78174 0.80019 0.88047 0.92835 0.87487 0.75189 0.90837 0.93117 0.88877 0.93733 0.90044 0.94056 0.93160 0.93013 0.94274 0.93497 0.89631 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.07 1.28 6.03 71.98 0.43 1.72 16 3 O -0.32 -8.45 9.57 -87.15 -0.83 -9.28 16 4 C 0.34 8.15 7.51 85.13 0.64 8.79 16 5 N -0.56 -10.83 9.21 -308.00 -2.84 -13.67 16 6 C 0.16 1.85 11.17 84.72 0.95 2.80 16 7 C -0.20 -2.04 9.79 22.32 0.22 -1.82 16 8 C 0.02 0.37 5.95 -19.42 -0.12 0.25 16 9 C -0.12 -1.45 9.69 71.24 0.69 -0.76 16 10 C -0.23 -5.31 5.66 -19.91 -0.11 -5.43 16 11 C 0.58 16.02 5.42 86.69 0.47 16.49 16 12 O -0.58 -20.76 17.11 -4.01 -0.07 -20.83 16 13 N -0.70 -16.21 5.27 -466.29 -2.46 -18.66 16 14 C 0.13 3.40 5.06 86.38 0.44 3.84 16 15 C -0.08 -2.05 2.19 -10.77 -0.02 -2.07 16 16 C -0.12 -3.47 5.25 30.67 0.16 -3.31 16 17 C 0.14 5.29 6.52 86.36 0.56 5.86 16 18 N -0.62 -28.85 2.77 -699.10 -1.94 -30.78 16 19 C -0.25 -14.27 10.04 84.03 0.84 -13.42 16 20 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 21 C -0.04 -2.32 5.23 84.86 0.44 -1.88 16 22 N -0.96 -61.27 13.97 21.65 0.30 -60.97 16 23 Si 0.95 46.51 24.35 68.60 1.67 48.18 16 24 H -0.27 -12.61 6.62 99.48 0.66 -11.95 16 25 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 26 H -0.26 -11.78 6.63 99.48 0.66 -11.12 16 27 C 0.12 4.91 4.20 86.36 0.36 5.27 16 28 C -0.12 -3.84 5.36 30.67 0.16 -3.68 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.25 8.10 -2.39 -0.02 1.24 16 33 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 34 H 0.20 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.92 7.19 -2.39 -0.02 0.90 16 38 H 0.11 0.69 8.10 -2.39 -0.02 0.67 16 39 H 0.41 7.69 7.63 -92.71 -0.71 6.99 16 40 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.93 7.15 -2.39 -0.02 1.92 16 45 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.05 1.94 7.93 -2.38 -0.02 1.92 16 47 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 48 H 0.04 1.50 7.07 -2.39 -0.02 1.48 16 49 H 0.05 2.17 4.50 -2.39 -0.01 2.15 16 50 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 51 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -80.01 405.76 0.83 -79.19 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.12 Total: 15.98 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: 6.86 Total: 10.85 kcal Atomic # 7 Polarization: -117.16 SS G_CDS: -6.93 Total: -124.09 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.90 Total: -30.11 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.67 Total: 48.18 kcal Total: -80.01 0.83 -79.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000433981383.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.167 kcal (2) G-P(sol) polarization free energy of solvation -80.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds