Wall clock time and date at job start Wed Apr 1 2020 04:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47256 * 2 1 4 4 C 1.35901 * 116.99753 * 180.02562 * 3 2 1 5 5 C 1.38756 * 120.05812 * 359.96316 * 4 3 2 6 6 C 1.38119 * 119.94517 * 180.02562 * 5 4 3 7 7 C 1.38292 * 120.05627 * 0.02562 * 6 5 4 8 8 C 1.38241 * 120.10974 * 0.02627 * 7 6 5 9 9 C 1.38169 * 120.05626 * 359.95388 * 8 7 6 10 10 C 1.50703 * 120.02667 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47043 * 259.99942 * 10 9 8 12 12 C 1.34772 * 120.00101 * 180.02562 * 11 10 9 13 13 O 1.21582 * 120.00084 * 354.91508 * 12 11 10 14 14 N 1.34780 * 119.99955 * 174.92087 * 12 11 10 15 15 C 1.47079 * 120.88103 * 184.71935 * 14 12 11 16 16 C 1.53695 * 108.27951 * 128.74976 * 15 14 12 17 17 N 1.46904 * 109.25320 * 54.08167 * 16 15 14 18 18 C 1.46908 * 110.99512 * 172.60699 * 17 16 15 19 19 C 1.50702 * 109.47101 * 294.29769 * 18 17 16 20 20 H 1.07991 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99505 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00273 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99558 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47147 * 60.00225 * 23 21 19 25 25 H 1.48500 * 109.47203 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47363 * 299.99959 * 23 21 19 27 27 C 1.46895 * 111.27191 * 296.75324 * 17 16 15 28 28 C 1.47079 * 120.88366 * 4.98929 * 14 12 11 29 29 H 1.09001 * 109.47509 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46729 * 299.99836 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.99350 * 1 2 3 32 32 H 1.09004 * 109.46729 * 240.00164 * 2 1 3 33 33 H 1.08993 * 109.47377 * 120.01065 * 2 1 3 34 34 H 1.08003 * 120.02500 * 0.04031 * 5 4 3 35 35 H 1.08002 * 119.97175 * 180.29430 * 6 5 4 36 36 H 1.07995 * 119.94235 * 180.02562 * 7 6 5 37 37 H 1.08003 * 119.97107 * 179.97438 * 8 7 6 38 38 H 1.08995 * 109.47513 * 19.99817 * 10 9 8 39 39 H 1.08999 * 109.47096 * 140.00241 * 10 9 8 40 40 H 0.97006 * 119.99967 * 0.02562 * 11 10 9 41 41 H 1.09000 * 109.62326 * 248.52009 * 15 14 12 42 42 H 1.09004 * 109.62831 * 9.09760 * 15 14 12 43 43 H 1.08993 * 109.64757 * 294.07968 * 16 15 14 44 44 H 1.09004 * 109.42033 * 173.94143 * 16 15 14 45 45 H 1.08997 * 109.47111 * 54.30480 * 18 17 16 46 46 H 1.09000 * 109.46881 * 174.30001 * 18 17 16 47 47 H 0.96997 * 119.99740 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.49452 * 303.14979 * 27 17 16 49 49 H 1.08991 * 109.49759 * 183.06798 * 27 17 16 50 50 H 1.09009 * 109.62553 * 350.90004 * 28 14 12 51 51 H 1.08999 * 109.63116 * 111.47875 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.1999 0.4257 -0.0003 6 6 5.5689 0.6092 -0.0003 7 6 6.0963 1.8876 0.0000 8 6 5.2553 2.9848 0.0008 9 6 3.8851 2.8065 0.0004 10 6 2.9689 4.0030 0.0007 11 7 2.4813 4.2443 1.3610 12 6 1.6413 5.2699 1.6037 13 8 1.3610 6.0497 0.7141 14 7 1.1120 5.4310 2.8327 15 6 0.1148 6.4802 3.0935 16 6 -1.0941 5.8341 3.7887 17 7 -0.6357 5.1041 4.9783 18 6 -1.7746 4.6184 5.7691 19 6 -2.5336 5.7930 6.3306 20 1 -2.2033 6.7995 6.1207 21 6 -3.6497 5.5825 7.1124 22 7 -4.0515 4.3567 7.3684 23 14 -4.5909 7.0384 7.8078 24 1 -5.0880 7.8846 6.6932 25 1 -5.7420 6.5475 8.6073 26 1 -3.6915 7.8407 8.6752 27 6 0.2608 3.9993 4.6130 28 6 1.5207 4.5663 3.9500 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5140 0.8898 34 1 3.7885 -0.5729 -0.0003 35 1 6.2280 -0.2463 -0.0049 36 1 7.1669 2.0290 -0.0005 37 1 5.6696 3.9822 0.0014 38 1 3.5147 4.8787 -0.3502 39 1 2.1231 3.8131 -0.6601 40 1 2.7630 3.6658 2.0869 41 1 0.5475 7.2441 3.7396 42 1 -0.1997 6.9288 2.1512 43 1 -1.5842 5.1423 3.1038 44 1 -1.7982 6.6108 4.0875 45 1 -2.4348 4.0301 5.1319 46 1 -1.4102 3.9968 6.5869 47 1 -4.8369 4.2087 7.9180 48 1 -0.2482 3.3329 3.9165 49 1 0.5393 3.4453 5.5093 50 1 2.1362 3.7488 3.5742 51 1 2.0859 5.1497 4.6769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601563290.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:49 Heat of formation + Delta-G solvation = -25.477481 kcal Electronic energy + Delta-G solvation = -30894.956836 eV Core-core repulsion = 26795.005269 eV Total energy + Delta-G solvation = -4099.951566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.73572 -39.96545 -37.95804 -37.52360 -34.98821 -34.32436 -32.45935 -32.21165 -31.53320 -30.54474 -29.87286 -28.19867 -26.20562 -25.19538 -24.38077 -23.12834 -22.18949 -21.97590 -21.56177 -20.63719 -19.27645 -18.52944 -17.86332 -16.53406 -16.44043 -16.35244 -16.10718 -15.83378 -15.31539 -14.94019 -14.72031 -14.48812 -14.28696 -14.01069 -13.94964 -13.76092 -13.56518 -13.47294 -13.22670 -13.10238 -12.86643 -12.41092 -12.31289 -12.14862 -12.00803 -11.95493 -11.73595 -11.25861 -11.11633 -11.07801 -11.05584 -10.80902 -10.72652 -10.57487 -10.47656 -9.96834 -9.82100 -9.30263 -9.25936 -9.02544 -8.52195 -8.46055 -8.23753 -7.29010 -6.04730 -4.06341 0.86410 1.07757 2.84845 2.86360 3.33519 3.37354 3.40392 3.41165 3.44223 4.11031 4.31703 4.40862 4.43768 4.59933 4.61606 4.72684 4.83131 4.87893 4.93688 4.96469 5.17231 5.27713 5.30586 5.38604 5.41410 5.42719 5.46820 5.51865 5.54134 5.70084 5.77176 5.81614 5.88494 5.95282 6.00263 6.09047 6.09400 6.17031 6.24084 6.42261 6.47470 6.54935 6.61030 6.76227 7.07305 7.16173 7.24784 7.30835 7.76304 8.03378 8.10514 8.16624 8.50174 8.78873 9.00844 9.58123 11.06121 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015153 B = 0.002352 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.376068 B =11901.583969 C =12773.267022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.306 6.306 4 C 0.150 3.850 5 C -0.214 4.214 6 C -0.073 4.073 7 C -0.162 4.162 8 C -0.061 4.061 9 C -0.142 4.142 10 C 0.192 3.808 11 N -0.742 5.742 12 C 0.709 3.291 13 O -0.598 6.598 14 N -0.625 5.625 15 C 0.134 3.866 16 C 0.051 3.949 17 N -0.535 5.535 18 C 0.195 3.805 19 C -0.509 4.509 20 H 0.064 0.936 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.276 1.276 27 C 0.042 3.958 28 C 0.120 3.880 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.394 0.606 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.024 0.976 44 H 0.096 0.904 45 H -0.010 1.010 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.026 0.974 49 H 0.079 0.921 50 H 0.068 0.932 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.299 -10.530 -15.678 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.219 6.219 4 C 0.103 3.897 5 C -0.232 4.232 6 C -0.091 4.091 7 C -0.180 4.180 8 C -0.079 4.079 9 C -0.143 4.143 10 C 0.068 3.932 11 N -0.400 5.400 12 C 0.410 3.590 13 O -0.477 6.477 14 N -0.362 5.362 15 C 0.011 3.989 16 C -0.078 4.078 17 N -0.260 5.260 18 C 0.070 3.930 19 C -0.548 4.548 20 H 0.082 0.918 21 C -0.146 4.146 22 N -0.539 5.539 23 Si 0.727 3.273 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.088 4.088 28 C -0.004 4.004 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.115 0.885 45 H 0.008 0.992 46 H 0.049 0.951 47 H 0.071 0.929 48 H 0.044 0.956 49 H 0.097 0.903 50 H 0.086 0.914 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 19.007 -9.599 -15.953 26.607 hybrid contribution -0.786 -0.692 0.397 1.119 sum 18.222 -10.290 -15.557 26.075 Atomic orbital electron populations 1.21785 0.92369 1.02940 1.04015 1.22824 0.96256 0.81676 1.01211 1.86185 1.18436 1.29418 1.87835 1.18887 0.82738 0.93428 0.94626 1.21266 0.94427 0.98061 1.09484 1.20996 0.94300 0.97437 0.96384 1.21060 0.99984 0.92357 1.04647 1.20988 0.91485 0.99505 0.95947 1.19303 0.94199 0.92092 1.08717 1.19744 0.96024 0.93760 0.83626 1.45248 1.51397 1.32901 1.10452 1.15798 0.79038 0.81361 0.82754 1.90876 1.65970 1.46278 1.44610 1.47384 1.44606 1.36673 1.07578 1.21815 0.87836 0.88891 1.00365 1.22451 0.95465 0.98897 0.90998 1.62076 1.20745 1.24150 1.19030 1.19711 0.85854 0.95746 0.91709 1.21112 1.09862 0.93101 1.30678 0.91804 1.24989 0.97335 0.95863 0.96384 1.69945 1.25454 1.19716 1.38737 0.86549 0.79203 0.82490 0.79105 1.20217 1.21403 1.20125 1.22365 0.93847 0.93695 0.98891 1.21739 0.96976 0.93193 0.88501 0.90290 0.91146 0.91446 0.92122 0.91942 0.85375 0.85749 0.85701 0.85043 0.90995 0.90792 0.76936 0.91235 0.89397 0.95762 0.88549 0.99183 0.95138 0.92854 0.95584 0.90267 0.91397 0.90731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 37.16 0.38 -0.83 16 2 C 0.06 0.44 5.46 37.16 0.20 0.64 16 3 O -0.31 -3.30 9.37 -19.43 -0.18 -3.49 16 4 C 0.15 1.49 6.66 -39.22 -0.26 1.23 16 5 C -0.21 -1.73 9.04 -39.43 -0.36 -2.09 16 6 C -0.07 -0.52 10.04 -39.61 -0.40 -0.91 16 7 C -0.16 -1.16 10.04 -39.56 -0.40 -1.56 16 8 C -0.06 -0.50 9.67 -39.61 -0.38 -0.88 16 9 C -0.14 -1.41 5.26 -104.47 -0.55 -1.96 16 10 C 0.19 2.28 5.47 -5.19 -0.03 2.25 16 11 N -0.74 -9.72 5.46 -66.42 -0.36 -10.09 16 12 C 0.71 11.77 8.31 -86.92 -0.72 11.05 16 13 O -0.60 -11.89 15.83 5.29 0.08 -11.81 16 14 N -0.63 -10.13 3.00 -177.91 -0.53 -10.67 16 15 C 0.13 2.31 6.61 -3.37 -0.02 2.29 16 16 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 17 N -0.53 -11.27 4.62 -235.46 -1.09 -12.36 16 18 C 0.19 4.98 4.72 -4.97 -0.02 4.96 16 19 C -0.51 -14.05 8.41 -34.44 -0.29 -14.34 16 20 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 21 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 22 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 23 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 28 C 0.12 1.70 6.59 -3.60 -0.02 1.68 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 33 H 0.06 0.43 7.66 -51.93 -0.40 0.03 16 34 H 0.13 0.82 6.30 -52.48 -0.33 0.48 16 35 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.13 0.88 8.04 -52.48 -0.42 0.46 16 38 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 39 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 40 H 0.39 4.56 5.96 -40.82 -0.24 4.32 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.54 7.09 -51.93 -0.37 1.17 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.10 2.02 6.67 -51.93 -0.35 1.67 16 45 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 46 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 50 H 0.07 0.78 5.63 -51.92 -0.29 0.49 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -33.24 409.04 -11.40 -44.63 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.19 Total: 2.20 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.01 Total: 4.69 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -1.25 Total: -58.85 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.10 Total: -15.30 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.24 -11.40 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601563290.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.155 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds