Wall clock time and date at job start Wed Apr 1 2020 04:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47015 * 2 1 4 4 C 1.35901 * 116.99881 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05460 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94075 * 180.02562 * 5 4 3 7 7 C 1.38284 * 120.05925 * 359.97438 * 6 5 4 8 8 C 1.38251 * 120.11191 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05232 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.02689 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47240 * 260.02310 * 10 9 8 12 12 C 1.34778 * 119.99812 * 180.02562 * 11 10 9 13 13 O 1.21581 * 120.00036 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99764 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00233 * 180.02562 * 14 12 11 16 16 C 1.53038 * 109.45924 * 275.02955 * 15 14 12 17 17 C 1.53199 * 109.31280 * 178.59806 * 16 15 14 18 18 N 1.46919 * 108.76330 * 54.65334 * 17 16 15 19 19 C 1.36938 * 120.62888 * 126.40623 * 18 17 16 20 20 H 1.07992 * 120.00157 * 332.60789 * 19 18 17 21 21 C 1.38818 * 119.99962 * 152.60536 * 19 18 17 22 22 N 1.31613 * 119.99800 * 159.34480 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 339.34548 * 21 19 18 24 24 H 1.48506 * 109.46932 * 92.94478 * 23 21 19 25 25 H 1.48499 * 109.47165 * 212.93925 * 23 21 19 26 26 H 1.48501 * 109.47416 * 332.94320 * 23 21 19 27 27 C 1.46923 * 118.74293 * 306.38360 * 18 17 16 28 28 C 1.53044 * 109.46271 * 154.96971 * 15 14 12 29 29 H 1.08992 * 109.47441 * 59.99922 * 1 2 3 30 30 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46678 * 299.99339 * 1 2 3 32 32 H 1.09008 * 109.46553 * 240.00325 * 2 1 3 33 33 H 1.09003 * 109.47283 * 120.00562 * 2 1 3 34 34 H 1.07999 * 120.03143 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.96854 * 179.71631 * 6 5 4 36 36 H 1.07998 * 119.94480 * 179.97438 * 7 6 5 37 37 H 1.07990 * 119.97558 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.47044 * 20.02625 * 10 9 8 39 39 H 1.09006 * 109.47057 * 140.01886 * 10 9 8 40 40 H 0.96997 * 120.00214 * 359.97438 * 11 10 9 41 41 H 0.97006 * 120.00472 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.45831 * 34.99985 * 15 14 12 43 43 H 1.08999 * 109.49657 * 298.55982 * 16 15 14 44 44 H 1.09000 * 109.49986 * 58.65900 * 16 15 14 45 45 H 1.09000 * 109.59732 * 294.86804 * 17 16 15 46 46 H 1.08995 * 109.70123 * 174.50642 * 17 16 15 47 47 H 0.97001 * 119.99955 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58767 * 293.82884 * 27 18 17 49 49 H 1.08995 * 109.71129 * 173.46813 * 27 18 17 50 50 H 1.08993 * 109.49753 * 301.33880 * 28 15 14 51 51 H 1.09003 * 109.49401 * 61.43927 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0016 7 6 6.0963 1.8878 -0.0011 8 6 5.2552 2.9850 -0.0001 9 6 3.8851 2.8066 0.0000 10 6 2.9688 4.0031 0.0017 11 7 2.4822 4.2435 1.3624 12 6 1.6422 5.2690 1.6063 13 8 1.2881 5.9942 0.6969 14 7 1.1941 5.4899 2.8580 15 6 0.2807 6.6041 3.1231 16 6 1.0892 7.8848 3.3431 17 6 0.1297 9.0543 3.5852 18 7 -0.7662 8.7082 4.6970 19 6 -0.8935 9.5417 5.7760 20 1 -0.0777 10.1919 6.0552 21 6 -2.0711 9.5509 6.5109 22 7 -2.0742 10.0133 7.7431 23 14 -3.6513 8.9070 5.7508 24 1 -3.8151 7.4709 6.0915 25 1 -4.8053 9.6763 6.2817 26 1 -3.5899 9.0618 4.2752 27 6 -1.5235 7.4510 4.6289 28 6 -0.5456 6.2994 4.3747 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.7887 -0.5729 -0.0024 35 1 6.2281 -0.2461 0.0022 36 1 7.1669 2.0293 -0.0007 37 1 5.6694 3.9823 0.0008 38 1 3.5144 4.8790 -0.3492 39 1 2.1225 3.8136 -0.6587 40 1 2.7638 3.6643 2.0876 41 1 1.4758 4.9106 3.5833 42 1 -0.3862 6.7375 2.2713 43 1 1.7382 7.7609 4.2100 44 1 1.6953 8.0886 2.4604 45 1 -0.4580 9.2374 2.6857 46 1 0.6979 9.9493 3.8388 47 1 -2.8972 10.0201 8.2565 48 1 -2.2460 7.5032 3.8144 49 1 -2.0462 7.2852 5.5709 50 1 -1.1031 5.3747 4.2263 51 1 0.1190 6.1907 5.2318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609340818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:07 Heat of formation + Delta-G solvation = -20.413216 kcal Electronic energy + Delta-G solvation = -30432.388410 eV Core-core repulsion = 26332.656447 eV Total energy + Delta-G solvation = -4099.731963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.78597 -39.82740 -38.04403 -37.66206 -35.08307 -34.34933 -32.49089 -32.11206 -31.46003 -30.36775 -30.12212 -29.64205 -26.30532 -24.66645 -24.45812 -22.86823 -22.17735 -21.88345 -21.52990 -20.63674 -19.59467 -18.69120 -18.15440 -16.89704 -16.57431 -16.49522 -16.26424 -15.86917 -15.22399 -15.15946 -14.84045 -14.41523 -14.14344 -14.07117 -14.00368 -13.73559 -13.67095 -13.24166 -13.14797 -12.99961 -12.87937 -12.63349 -12.40882 -12.30573 -12.11869 -11.93552 -11.80074 -11.71501 -11.19013 -11.15197 -10.91437 -10.76715 -10.48299 -10.21849 -10.16123 -9.98119 -9.72056 -9.43297 -9.34930 -9.10541 -8.61511 -8.59597 -8.54198 -6.94797 -5.91947 -3.27173 0.79829 1.00705 2.76241 2.84731 3.34004 3.39809 3.42023 3.51708 3.55877 4.24948 4.35888 4.43362 4.47666 4.53396 4.56113 4.64663 4.76399 4.84516 4.90323 5.01038 5.08402 5.24400 5.30547 5.35185 5.37634 5.39443 5.45667 5.48524 5.66309 5.71484 5.75949 5.88195 5.89791 6.02661 6.10856 6.11088 6.20310 6.23667 6.35212 6.40335 6.47399 6.50778 6.63177 6.71602 6.71831 6.87125 6.95411 6.98978 7.14705 7.99885 8.18048 8.36300 8.79498 8.97653 9.75414 10.13688 11.24125 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002129 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.615492 B =13148.321865 C =14068.971997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.306 6.306 4 C 0.148 3.852 5 C -0.214 4.214 6 C -0.073 4.073 7 C -0.161 4.161 8 C -0.060 4.060 9 C -0.141 4.141 10 C 0.193 3.807 11 N -0.743 5.743 12 C 0.704 3.296 13 O -0.592 6.592 14 N -0.740 5.740 15 C 0.170 3.830 16 C -0.141 4.141 17 C 0.151 3.849 18 N -0.607 5.607 19 C -0.257 4.257 20 H 0.086 0.914 21 C 0.021 3.979 22 N -0.909 5.909 23 Si 0.881 3.119 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.130 3.870 28 C -0.140 4.140 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.393 0.607 41 H 0.391 0.609 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.025 0.975 46 H 0.065 0.935 47 H 0.262 0.738 48 H 0.027 0.973 49 H 0.076 0.924 50 H 0.058 0.942 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.474 -24.712 -16.446 33.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.219 6.219 4 C 0.102 3.898 5 C -0.233 4.233 6 C -0.092 4.092 7 C -0.179 4.179 8 C -0.079 4.079 9 C -0.142 4.142 10 C 0.069 3.931 11 N -0.399 5.399 12 C 0.404 3.596 13 O -0.470 6.470 14 N -0.394 5.394 15 C 0.065 3.935 16 C -0.181 4.181 17 C 0.024 3.976 18 N -0.330 5.330 19 C -0.385 4.385 20 H 0.103 0.897 21 C -0.177 4.177 22 N -0.553 5.553 23 Si 0.712 3.288 24 H -0.217 1.217 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.003 3.997 28 C -0.180 4.180 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.226 0.774 41 H 0.224 0.776 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.083 0.917 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.856 -23.801 -17.159 32.448 hybrid contribution -0.498 -1.346 0.402 1.490 sum 13.358 -25.146 -16.756 33.039 Atomic orbital electron populations 1.21780 0.92464 1.02871 1.03931 1.22818 0.96174 0.81798 1.01238 1.86175 1.18528 1.29282 1.87945 1.18873 0.82642 0.93435 0.94848 1.21257 0.94441 0.98014 1.09572 1.20999 0.94301 0.97456 0.96404 1.21078 1.00054 0.92349 1.04463 1.21012 0.91506 0.99566 0.95816 1.19310 0.94203 0.92081 1.08593 1.19739 0.96001 0.93764 0.83598 1.45110 1.51419 1.32950 1.10400 1.15963 0.79119 0.80982 0.83553 1.90914 1.62494 1.49707 1.43922 1.45446 1.51712 1.34467 1.07749 1.20827 0.89977 0.84619 0.98039 1.22392 0.98974 0.95901 1.00872 1.20903 0.91440 0.95046 0.90187 1.44410 1.50131 1.18698 1.19801 1.18937 0.98928 1.18298 1.02373 0.89655 1.25288 0.97601 0.98676 0.96158 1.69837 1.27490 1.49936 1.07994 0.86970 0.84479 0.77120 0.80237 1.21667 1.23169 1.19443 1.21296 0.92989 0.85270 1.00103 1.22347 0.99305 0.99450 0.96870 0.91379 0.90342 0.91300 0.92081 0.92019 0.85424 0.85743 0.85654 0.84970 0.91001 0.90707 0.77376 0.77570 0.90003 0.92014 0.92215 0.95684 0.91660 0.92822 0.95487 0.90577 0.92338 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.05 0.35 5.46 37.16 0.20 0.55 16 3 O -0.31 -2.88 9.37 -19.43 -0.18 -3.06 16 4 C 0.15 1.32 6.66 -39.22 -0.26 1.06 16 5 C -0.21 -1.54 9.04 -39.43 -0.36 -1.89 16 6 C -0.07 -0.47 10.04 -39.61 -0.40 -0.86 16 7 C -0.16 -1.06 10.04 -39.56 -0.40 -1.46 16 8 C -0.06 -0.46 9.67 -39.60 -0.38 -0.84 16 9 C -0.14 -1.28 5.26 -104.47 -0.55 -1.82 16 10 C 0.19 2.11 5.46 -5.20 -0.03 2.08 16 11 N -0.74 -8.56 5.55 -66.42 -0.37 -8.93 16 12 C 0.70 10.68 8.53 -86.92 -0.74 9.94 16 13 O -0.59 -11.45 16.00 5.29 0.08 -11.37 16 14 N -0.74 -10.42 5.08 -58.63 -0.30 -10.72 16 15 C 0.17 2.88 2.42 -67.89 -0.16 2.72 16 16 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 17 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 18 N -0.61 -14.65 2.77 -172.32 -0.48 -15.12 16 19 C -0.26 -7.25 10.04 -15.06 -0.15 -7.40 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 22 N -0.91 -28.01 13.97 55.49 0.78 -27.23 16 23 Si 0.88 22.57 24.35 -169.99 -4.14 18.43 16 24 H -0.29 -7.07 6.62 56.52 0.37 -6.70 16 25 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 26 H -0.27 -6.84 6.63 56.52 0.38 -6.47 16 27 C 0.13 2.85 4.20 -3.71 -0.02 2.83 16 28 C -0.14 -2.44 5.55 -26.61 -0.15 -2.59 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.31 7.66 -51.92 -0.40 -0.08 16 33 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 34 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 35 H 0.12 0.52 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 37 H 0.13 0.84 8.04 -52.49 -0.42 0.42 16 38 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 39 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 40 H 0.39 3.71 8.48 -40.82 -0.35 3.37 16 41 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 42 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.03 0.60 7.08 -51.93 -0.37 0.23 16 49 H 0.08 1.81 4.50 -51.93 -0.23 1.57 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 404.81 15.07 6.10 6.10 Total: -1.00 -34.49 404.81 -10.09 -44.58 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.32 Total: 4.58 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -3.27 Total: 2.74 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: -0.37 Total: -62.01 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.10 Total: -14.43 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.14 Total: 18.43 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.49 -10.09 -44.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.166 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds