Wall clock time and date at job start Wed Apr 1 2020 04:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42897 * 109.47015 * 2 1 4 4 C 1.35901 * 116.99881 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05460 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94075 * 180.02562 * 5 4 3 7 7 C 1.38284 * 120.05925 * 359.97438 * 6 5 4 8 8 C 1.38251 * 120.11191 * 0.02562 * 7 6 5 9 9 C 1.38169 * 120.05232 * 359.97438 * 8 7 6 10 10 C 1.50702 * 120.02689 * 179.97438 * 9 8 7 11 11 N 1.46494 * 109.47240 * 260.02310 * 10 9 8 12 12 C 1.34778 * 119.99812 * 180.02562 * 11 10 9 13 13 O 1.21581 * 120.00036 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99764 * 179.97438 * 12 11 10 15 15 C 1.46501 * 120.00233 * 180.02562 * 14 12 11 16 16 C 1.53038 * 109.45924 * 275.02955 * 15 14 12 17 17 C 1.53199 * 109.31280 * 178.59806 * 16 15 14 18 18 N 1.46919 * 108.76330 * 54.65334 * 17 16 15 19 19 C 1.36938 * 120.62888 * 126.40623 * 18 17 16 20 20 H 1.07992 * 120.00157 * 332.60789 * 19 18 17 21 21 C 1.38818 * 119.99962 * 152.60536 * 19 18 17 22 22 N 1.31613 * 119.99800 * 159.34480 * 21 19 18 23 23 Si 1.86797 * 119.99913 * 339.34548 * 21 19 18 24 24 H 1.48506 * 109.46932 * 92.94478 * 23 21 19 25 25 H 1.48499 * 109.47165 * 212.93925 * 23 21 19 26 26 H 1.48501 * 109.47416 * 332.94320 * 23 21 19 27 27 C 1.46923 * 118.74293 * 306.38360 * 18 17 16 28 28 C 1.53044 * 109.46271 * 154.96971 * 15 14 12 29 29 H 1.08992 * 109.47441 * 59.99922 * 1 2 3 30 30 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46678 * 299.99339 * 1 2 3 32 32 H 1.09008 * 109.46553 * 240.00325 * 2 1 3 33 33 H 1.09003 * 109.47283 * 120.00562 * 2 1 3 34 34 H 1.07999 * 120.03143 * 0.02562 * 5 4 3 35 35 H 1.08000 * 119.96854 * 179.71631 * 6 5 4 36 36 H 1.07998 * 119.94480 * 179.97438 * 7 6 5 37 37 H 1.07990 * 119.97558 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.47044 * 20.02625 * 10 9 8 39 39 H 1.09006 * 109.47057 * 140.01886 * 10 9 8 40 40 H 0.96997 * 120.00214 * 359.97438 * 11 10 9 41 41 H 0.97006 * 120.00472 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.45831 * 34.99985 * 15 14 12 43 43 H 1.08999 * 109.49657 * 298.55982 * 16 15 14 44 44 H 1.09000 * 109.49986 * 58.65900 * 16 15 14 45 45 H 1.09000 * 109.59732 * 294.86804 * 17 16 15 46 46 H 1.08995 * 109.70123 * 174.50642 * 17 16 15 47 47 H 0.97001 * 119.99955 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.58767 * 293.82884 * 27 18 17 49 49 H 1.08995 * 109.71129 * 173.46813 * 27 18 17 50 50 H 1.08993 * 109.49753 * 301.33880 * 28 15 14 51 51 H 1.09003 * 109.49401 * 61.43927 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 -0.0005 5 6 4.2000 0.4257 -0.0016 6 6 5.5689 0.6094 -0.0016 7 6 6.0963 1.8878 -0.0011 8 6 5.2552 2.9850 -0.0001 9 6 3.8851 2.8066 0.0000 10 6 2.9688 4.0031 0.0017 11 7 2.4822 4.2435 1.3624 12 6 1.6422 5.2690 1.6063 13 8 1.2881 5.9942 0.6969 14 7 1.1941 5.4899 2.8580 15 6 0.2807 6.6041 3.1231 16 6 1.0892 7.8848 3.3431 17 6 0.1297 9.0543 3.5852 18 7 -0.7662 8.7082 4.6970 19 6 -0.8935 9.5417 5.7760 20 1 -0.0777 10.1919 6.0552 21 6 -2.0711 9.5509 6.5109 22 7 -2.0742 10.0133 7.7431 23 14 -3.6513 8.9070 5.7508 24 1 -3.8151 7.4709 6.0915 25 1 -4.8053 9.6763 6.2817 26 1 -3.5899 9.0618 4.2752 27 6 -1.5235 7.4510 4.6289 28 6 -0.5456 6.2994 4.3747 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5139 0.8899 34 1 3.7887 -0.5729 -0.0024 35 1 6.2281 -0.2461 0.0022 36 1 7.1669 2.0293 -0.0007 37 1 5.6694 3.9823 0.0008 38 1 3.5144 4.8790 -0.3492 39 1 2.1225 3.8136 -0.6587 40 1 2.7638 3.6643 2.0876 41 1 1.4758 4.9106 3.5833 42 1 -0.3862 6.7375 2.2713 43 1 1.7382 7.7609 4.2100 44 1 1.6953 8.0886 2.4604 45 1 -0.4580 9.2374 2.6857 46 1 0.6979 9.9493 3.8388 47 1 -2.8972 10.0201 8.2565 48 1 -2.2460 7.5032 3.8144 49 1 -2.0462 7.2852 5.5709 50 1 -1.1031 5.3747 4.2263 51 1 0.1190 6.1907 5.2318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609340818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:06 Heat of formation + Delta-G solvation = -44.031920 kcal Electronic energy + Delta-G solvation = -30433.412594 eV Core-core repulsion = 26332.656447 eV Total energy + Delta-G solvation = -4100.756147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.48732 -40.95076 -39.32310 -38.51570 -36.26536 -35.74458 -34.08025 -32.96684 -32.36401 -31.96900 -31.37821 -30.45926 -27.38530 -26.27834 -24.98444 -24.50510 -23.53889 -22.65286 -22.22366 -21.86374 -21.18890 -19.61320 -19.08109 -18.64645 -17.69482 -17.14813 -17.12891 -16.94965 -16.48697 -16.25608 -15.93912 -15.69739 -15.47362 -15.34711 -15.18779 -14.83594 -14.59402 -14.46854 -14.30798 -14.21917 -13.84205 -13.76526 -13.63555 -13.42207 -13.40675 -12.92089 -12.62389 -12.58617 -12.53652 -12.35734 -12.27018 -12.01634 -11.77377 -11.69912 -11.66146 -11.55734 -11.40740 -11.28632 -10.70973 -10.30688 -9.92670 -9.72798 -9.15956 -8.96217 -8.15525 -5.47709 0.23301 0.46977 1.30024 1.43415 1.52454 1.78584 2.20248 2.25664 2.42290 2.79041 3.06290 3.29893 3.43207 3.63873 3.79350 3.83703 4.00498 4.01033 4.03908 4.21150 4.24363 4.29477 4.33337 4.35880 4.38140 4.49291 4.55707 4.64059 4.64945 4.69110 4.73984 4.87834 4.90582 4.91081 4.93166 5.02632 5.05242 5.08243 5.16894 5.19003 5.36456 5.41079 5.45462 5.51080 5.58311 5.59026 5.85529 5.87473 6.03855 6.13722 6.45504 6.91095 7.13244 7.61821 7.62799 8.02799 9.04260 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.002129 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.615492 B =13148.321865 C =14068.971997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.330 6.330 4 C 0.134 3.866 5 C -0.217 4.217 6 C -0.072 4.072 7 C -0.163 4.163 8 C -0.066 4.066 9 C -0.156 4.156 10 C 0.198 3.802 11 N -0.725 5.725 12 C 0.702 3.298 13 O -0.635 6.635 14 N -0.727 5.727 15 C 0.180 3.820 16 C -0.127 4.127 17 C 0.147 3.853 18 N -0.619 5.619 19 C -0.248 4.248 20 H 0.053 0.947 21 C -0.034 4.034 22 N -0.955 5.955 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.311 1.311 26 H -0.266 1.266 27 C 0.122 3.878 28 C -0.126 4.126 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.406 0.594 41 H 0.408 0.592 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.262 0.738 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.088 0.912 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.638 -28.035 -17.488 36.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.244 6.244 4 C 0.088 3.912 5 C -0.236 4.236 6 C -0.090 4.090 7 C -0.181 4.181 8 C -0.084 4.084 9 C -0.157 4.157 10 C 0.074 3.926 11 N -0.380 5.380 12 C 0.402 3.598 13 O -0.517 6.517 14 N -0.382 5.382 15 C 0.074 3.926 16 C -0.167 4.167 17 C 0.022 3.978 18 N -0.344 5.344 19 C -0.377 4.377 20 H 0.071 0.929 21 C -0.229 4.229 22 N -0.602 5.602 23 Si 0.773 3.227 24 H -0.195 1.195 25 H -0.240 1.240 26 H -0.191 1.191 27 C -0.004 4.004 28 C -0.165 4.165 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.158 0.842 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.241 0.759 41 H 0.244 0.756 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.049 0.951 49 H 0.077 0.923 50 H 0.106 0.894 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 15.065 -27.205 -18.212 36.038 hybrid contribution -0.732 -0.339 0.669 1.047 sum 14.334 -27.543 -17.543 35.663 Atomic orbital electron populations 1.21804 0.92487 1.03946 1.02691 1.23011 0.96185 0.80882 1.02448 1.86145 1.19027 1.31051 1.88184 1.19042 0.82776 0.93875 0.95488 1.21503 0.94729 0.98312 1.09020 1.21370 0.94359 0.98307 0.94932 1.21375 1.01053 0.92116 1.03559 1.21173 0.91031 1.00575 0.95639 1.19197 0.94457 0.91408 1.10628 1.19653 0.95570 0.94700 0.82645 1.44982 1.50018 1.31809 1.11227 1.16096 0.79294 0.81250 0.83160 1.90889 1.64101 1.51435 1.45262 1.45093 1.51094 1.33914 1.08101 1.20505 0.89944 0.84995 0.97146 1.22208 0.98247 0.95345 1.00930 1.21007 0.91446 0.96227 0.89136 1.44514 1.50902 1.19296 1.19645 1.18862 0.97905 1.17928 1.03015 0.92891 1.25883 1.00548 1.00046 0.96376 1.69958 1.28153 1.52621 1.09419 0.85957 0.80044 0.77537 0.79201 1.19469 1.23987 1.19079 1.21367 0.93954 0.85729 0.99315 1.22153 0.98645 0.98683 0.97064 0.92510 0.88126 0.92572 0.90821 0.90721 0.83676 0.83169 0.83570 0.84178 0.91426 0.92842 0.75872 0.75571 0.91658 0.91913 0.91900 0.95378 0.92252 0.92907 0.95100 0.92254 0.89392 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.28 71.98 0.74 -0.90 16 2 C 0.05 0.54 5.46 71.98 0.39 0.94 16 3 O -0.33 -5.92 9.37 -92.44 -0.87 -6.79 16 4 C 0.13 2.21 6.66 22.51 0.15 2.36 16 5 C -0.22 -2.57 9.04 22.37 0.20 -2.37 16 6 C -0.07 -0.69 10.04 22.25 0.22 -0.46 16 7 C -0.16 -1.70 10.04 22.28 0.22 -1.47 16 8 C -0.07 -0.89 9.67 22.26 0.22 -0.67 16 9 C -0.16 -2.67 5.26 -19.77 -0.10 -2.77 16 10 C 0.20 4.30 5.46 85.63 0.47 4.77 16 11 N -0.72 -15.91 5.55 -482.31 -2.68 -18.59 16 12 C 0.70 20.52 8.53 179.05 1.53 22.04 16 13 O -0.64 -24.41 16.00 -3.97 -0.06 -24.47 16 14 N -0.73 -18.97 5.08 -457.69 -2.33 -21.30 16 15 C 0.18 5.78 2.42 45.02 0.11 5.89 16 16 C -0.13 -4.42 5.65 30.67 0.17 -4.25 16 17 C 0.15 6.08 6.52 86.37 0.56 6.64 16 18 N -0.62 -29.69 2.77 -699.11 -1.94 -31.62 16 19 C -0.25 -14.20 10.04 84.03 0.84 -13.35 16 20 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 21 C -0.03 -1.98 5.23 84.86 0.44 -1.54 16 22 N -0.96 -60.19 13.97 21.65 0.30 -59.89 16 23 Si 0.94 46.86 24.35 68.60 1.67 48.53 16 24 H -0.27 -12.32 6.62 99.48 0.66 -11.67 16 25 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 26 H -0.27 -12.91 6.63 99.48 0.66 -12.25 16 27 C 0.12 5.15 4.20 86.36 0.36 5.51 16 28 C -0.13 -4.08 5.55 30.67 0.17 -3.91 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 33 H 0.07 0.61 7.67 -2.39 -0.02 0.59 16 34 H 0.15 1.11 6.30 -2.91 -0.02 1.09 16 35 H 0.15 0.63 8.06 -2.91 -0.02 0.61 16 36 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 37 H 0.14 1.56 8.04 -2.92 -0.02 1.54 16 38 H 0.07 1.51 8.00 -2.39 -0.02 1.49 16 39 H 0.05 1.39 7.86 -2.38 -0.02 1.37 16 40 H 0.41 6.93 8.48 -92.71 -0.79 6.15 16 41 H 0.41 8.07 8.62 -92.70 -0.80 7.27 16 42 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 2.47 7.93 -2.39 -0.02 2.45 16 47 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 48 H 0.03 1.30 7.08 -2.39 -0.02 1.28 16 49 H 0.06 2.72 4.50 -2.39 -0.01 2.70 16 50 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -75.98 404.81 0.07 -75.91 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.74 Total: 21.77 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 6.70 Total: 16.45 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -6.64 Total: -131.40 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.93 Total: -31.26 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -75.98 0.07 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609340818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.878 kcal (2) G-P(sol) polarization free energy of solvation -75.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds