Wall clock time and date at job start Wed Apr 1 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46911 * 2 1 4 4 N 1.41601 * 113.99703 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00031 * 269.99455 * 4 3 2 6 6 C 1.50699 * 109.47073 * 254.99951 * 5 4 3 7 7 C 1.38235 * 119.99765 * 269.72329 * 6 5 4 8 8 C 1.38241 * 119.99391 * 179.76559 * 7 6 5 9 9 C 1.38236 * 120.00069 * 0.51152 * 8 7 6 10 10 C 1.38231 * 119.99973 * 359.74763 * 9 8 7 11 11 C 1.38233 * 120.00242 * 359.97438 * 10 9 8 12 12 C 1.34783 * 120.00095 * 89.99194 * 4 3 2 13 13 O 1.21585 * 119.99991 * 179.97438 * 12 4 3 14 14 N 1.34779 * 119.99707 * 0.02562 * 12 4 3 15 15 C 1.46504 * 119.99730 * 179.97438 * 14 12 4 16 16 C 1.53081 * 109.43848 * 84.79387 * 15 14 12 17 17 C 1.53190 * 109.29209 * 181.23616 * 16 15 14 18 18 N 1.46921 * 108.89311 * 305.57883 * 17 16 15 19 19 C 1.36940 * 120.63187 * 233.51481 * 18 17 16 20 20 H 1.08001 * 120.00319 * 152.61971 * 19 18 17 21 21 C 1.38813 * 119.99903 * 332.62203 * 19 18 17 22 22 N 1.31624 * 120.00070 * 159.34992 * 21 19 18 23 23 Si 1.86800 * 120.00077 * 339.35529 * 21 19 18 24 24 H 1.48494 * 109.47321 * 92.87851 * 23 21 19 25 25 H 1.48501 * 109.47194 * 212.88430 * 23 21 19 26 26 H 1.48509 * 109.46983 * 332.87654 * 23 21 19 27 27 C 1.46923 * 118.74178 * 53.54201 * 18 17 16 28 28 C 1.53035 * 109.45960 * 204.99782 * 15 14 12 29 29 H 1.09001 * 109.47530 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47087 * 300.00714 * 1 2 3 31 31 H 1.09001 * 109.47303 * 60.00100 * 1 2 3 32 32 H 1.08991 * 109.46870 * 239.99343 * 2 1 3 33 33 H 1.09004 * 109.46721 * 119.99174 * 2 1 3 34 34 H 1.08996 * 109.46912 * 15.00296 * 5 4 3 35 35 H 1.09007 * 109.47003 * 134.99802 * 5 4 3 36 36 H 1.07994 * 120.00436 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.99456 * 180.23186 * 8 7 6 38 38 H 1.08001 * 120.00020 * 179.72047 * 9 8 7 39 39 H 1.08001 * 120.00226 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.00287 * 179.97438 * 11 10 9 41 41 H 0.96998 * 120.00063 * 359.97438 * 14 12 4 42 42 H 1.08998 * 109.46073 * 324.97324 * 15 14 12 43 43 H 1.08992 * 109.38800 * 61.36034 * 16 15 14 44 44 H 1.09002 * 109.61927 * 301.25313 * 16 15 14 45 45 H 1.08999 * 109.58729 * 185.71870 * 17 16 15 46 46 H 1.09004 * 109.58886 * 65.43758 * 17 16 15 47 47 H 0.97001 * 119.99914 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59094 * 66.17180 * 27 18 17 49 49 H 1.09001 * 109.59077 * 186.46452 * 27 18 17 50 50 H 1.09002 * 109.49848 * 58.67960 * 28 15 14 51 51 H 1.09002 * 109.52425 * 298.59433 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 4.1486 1.5169 1.2679 6 6 4.6082 2.9299 1.5189 7 6 5.8440 3.3465 1.0604 8 6 6.2635 4.6442 1.2864 9 6 5.4518 5.5220 1.9802 10 6 4.2183 5.1038 2.4434 11 6 3.7963 3.8079 2.2123 12 6 4.0892 1.5123 -1.1681 13 8 5.3013 1.6088 -1.1686 14 7 3.4169 1.4596 -2.3350 15 6 4.1466 1.5180 -3.6041 16 6 4.6269 0.1142 -3.9806 17 6 5.4157 0.1839 -5.2920 18 7 4.5839 0.8343 -6.3135 19 6 4.3582 0.2269 -7.5199 20 1 3.4546 0.4407 -8.0715 21 6 5.2908 -0.6637 -8.0338 22 7 4.9301 -1.5402 -8.9471 23 14 7.0576 -0.6183 -7.4291 24 1 7.2212 -1.5759 -6.3060 25 1 7.9702 -0.9955 -8.5382 26 1 7.3860 0.7528 -6.9625 27 6 3.9992 2.1490 -6.0165 28 6 3.2230 2.0571 -4.6988 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.4941 1.1981 2.0790 35 1 5.0145 0.8564 1.2188 36 1 6.4799 2.6595 0.5219 37 1 7.2274 4.9707 0.9249 38 1 5.7814 6.5345 2.1608 39 1 3.5843 5.7895 2.9857 40 1 2.8328 3.4810 2.5745 41 1 2.4499 1.3831 -2.3346 42 1 5.0076 2.1779 -3.4978 43 1 3.7652 -0.5408 -4.1088 44 1 5.2679 -0.2774 -3.1908 45 1 5.6731 -0.8239 -5.6176 46 1 6.3269 0.7626 -5.1400 47 1 5.5817 -2.1627 -9.3059 48 1 4.7936 2.8893 -5.9217 49 1 3.3237 2.4389 -6.8213 50 1 2.8650 3.0475 -4.4177 51 1 2.3740 1.3849 -4.8228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838341679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:55 Heat of formation + Delta-G solvation = 29.271703 kcal Electronic energy + Delta-G solvation = -31530.171742 eV Core-core repulsion = 27432.594278 eV Total energy + Delta-G solvation = -4097.577464 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.41401 -39.16583 -38.07931 -37.36838 -34.78885 -34.00560 -32.32451 -31.71001 -30.98545 -30.42493 -30.34695 -29.65015 -26.40537 -24.67710 -23.27438 -22.83045 -22.67733 -22.20437 -21.42448 -20.42971 -19.78730 -18.68684 -17.51904 -16.90323 -16.58591 -16.01560 -15.75058 -15.38641 -15.18063 -15.14862 -15.02364 -14.38579 -14.23854 -14.15987 -13.74134 -13.54208 -13.42519 -13.19531 -12.96570 -12.87539 -12.72927 -12.52746 -12.37524 -12.28606 -11.99195 -11.87793 -11.77033 -11.41572 -11.11705 -11.03915 -10.83432 -10.68263 -10.58090 -10.19873 -10.10836 -10.00573 -9.79991 -9.49009 -9.24545 -8.99769 -8.93307 -8.69213 -8.56612 -6.98220 -5.94174 -3.30041 0.99513 1.32175 1.82910 3.06421 3.32609 3.35698 3.51497 3.55590 3.71089 4.49364 4.55150 4.62257 4.63383 4.65561 4.77065 4.87781 4.95652 4.97300 5.00939 5.06667 5.18657 5.25910 5.32441 5.42408 5.44766 5.46607 5.48548 5.53053 5.68833 5.72243 5.84160 5.84211 5.96494 6.05349 6.13428 6.16917 6.27746 6.31872 6.33119 6.42115 6.43366 6.49957 6.58350 6.65438 6.69337 6.76627 6.86579 6.89587 7.01096 7.95492 7.97983 8.33263 8.52846 8.94573 9.73014 10.10610 11.21664 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.002900 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.191062 B = 9653.722326 C =10874.906097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.018 3.982 3 O -0.146 6.146 4 N -0.493 5.493 5 C 0.181 3.819 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.129 4.129 9 C -0.114 4.114 10 C -0.132 4.132 11 C -0.097 4.097 12 C 0.715 3.285 13 O -0.568 6.568 14 N -0.731 5.731 15 C 0.167 3.833 16 C -0.140 4.140 17 C 0.129 3.871 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.023 3.977 22 N -0.909 5.909 23 Si 0.882 3.118 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.153 3.847 28 C -0.140 4.140 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.397 0.603 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.027 0.973 47 H 0.262 0.738 48 H 0.025 0.975 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.350 8.405 25.637 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.061 4.061 3 O -0.151 6.151 4 N -0.275 5.275 5 C 0.060 3.940 6 C -0.113 4.113 7 C -0.098 4.098 8 C -0.147 4.147 9 C -0.133 4.133 10 C -0.150 4.150 11 C -0.116 4.116 12 C 0.417 3.583 13 O -0.445 6.445 14 N -0.384 5.384 15 C 0.063 3.937 16 C -0.181 4.181 17 C 0.003 3.997 18 N -0.330 5.330 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.552 5.552 23 Si 0.712 3.288 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.026 3.974 28 C -0.180 4.180 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.153 0.847 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.231 0.769 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.523 8.505 25.456 27.401 hybrid contribution 0.362 -0.397 0.323 0.627 sum -5.161 8.108 25.779 27.512 Atomic orbital electron populations 1.21719 0.92154 1.03115 1.03450 1.23136 0.95976 0.85316 1.01638 1.90647 1.02458 1.25256 1.96730 1.49422 0.94226 1.78636 1.05218 1.20387 0.95930 0.93863 0.83797 1.20075 0.95124 0.96336 0.99790 1.21362 0.95799 0.96277 0.96406 1.21209 1.00114 0.93961 0.99374 1.21186 0.94630 0.99455 0.98009 1.21078 0.96660 0.96063 1.01204 1.21021 0.98846 0.93535 0.98201 1.15893 0.84863 0.77765 0.79766 1.90928 1.10767 1.58153 1.84662 1.45483 1.10449 1.77846 1.04614 1.20908 0.94833 0.97743 0.80182 1.22415 1.00852 0.96172 0.98656 1.21304 0.92713 0.97936 0.87729 1.44404 1.58590 1.16517 1.13508 1.18915 1.03011 1.21412 0.95486 0.89650 1.25275 0.97924 0.97680 0.96666 1.69839 1.34238 1.19344 1.31754 0.86969 0.86829 0.78389 0.76592 1.21609 1.23156 1.19441 1.20861 0.95358 0.87500 0.93694 1.22329 0.99049 1.00200 0.96396 0.90308 0.91631 0.91327 0.92121 0.92369 0.88917 0.89076 0.84680 0.86099 0.86324 0.86275 0.86275 0.76913 0.89881 0.91830 0.92356 0.90797 0.95469 0.92785 0.95668 0.91343 0.92094 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.02 0.15 7.04 37.16 0.26 0.41 16 3 O -0.15 -1.56 10.19 -11.47 -0.12 -1.67 16 4 N -0.49 -5.98 3.01 -66.41 -0.20 -6.18 16 5 C 0.18 1.85 5.85 -5.19 -0.03 1.82 16 6 C -0.11 -1.25 5.25 -104.62 -0.55 -1.80 16 7 C -0.08 -0.97 8.78 -39.58 -0.35 -1.32 16 8 C -0.13 -1.40 10.05 -39.58 -0.40 -1.80 16 9 C -0.11 -1.11 10.05 -39.58 -0.40 -1.51 16 10 C -0.13 -1.25 10.05 -39.59 -0.40 -1.64 16 11 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 12 C 0.71 10.75 8.20 -86.91 -0.71 10.04 16 13 O -0.57 -9.99 13.56 5.29 0.07 -9.91 16 14 N -0.73 -10.54 5.05 -58.61 -0.30 -10.83 16 15 C 0.17 2.79 2.41 -67.87 -0.16 2.62 16 16 C -0.14 -2.64 5.66 -26.59 -0.15 -2.79 16 17 C 0.13 2.91 4.20 -3.71 -0.02 2.89 16 18 N -0.61 -14.41 2.77 -172.32 -0.48 -14.89 16 19 C -0.26 -7.25 10.03 -15.06 -0.15 -7.40 16 20 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 21 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 22 N -0.91 -27.93 13.97 55.49 0.78 -27.15 16 23 Si 0.88 22.77 24.34 -169.99 -4.14 18.63 16 24 H -0.29 -7.23 6.62 56.52 0.37 -6.86 16 25 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 26 H -0.27 -6.88 6.64 56.52 0.38 -6.50 16 27 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 28 C -0.14 -2.24 5.55 -26.61 -0.15 -2.39 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.71 8.08 -51.93 -0.42 0.29 16 35 H 0.09 0.94 7.84 -51.93 -0.41 0.54 16 36 H 0.14 1.80 6.78 -52.49 -0.36 1.45 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.40 5.04 7.67 -40.82 -0.31 4.73 16 42 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 1.82 4.50 -51.93 -0.23 1.58 16 46 H 0.03 0.62 7.07 -51.93 -0.37 0.25 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -32.84 405.56 -10.02 -42.86 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.43 Total: 4.28 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.32 Total: -1.25 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.20 Total: -59.05 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.05 Total: -11.59 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.84 -10.02 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838341679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.133 kcal (2) G-P(sol) polarization free energy of solvation -32.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds