Wall clock time and date at job start Wed Apr 1 2020 05:33:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 O 1.42902 * 109.46911 * 2 1
4 4 N 1.41601 * 113.99703 * 180.02562 * 3 2 1
5 5 C 1.46501 * 120.00031 * 269.99455 * 4 3 2
6 6 C 1.50699 * 109.47073 * 254.99951 * 5 4 3
7 7 C 1.38235 * 119.99765 * 269.72329 * 6 5 4
8 8 C 1.38241 * 119.99391 * 179.76559 * 7 6 5
9 9 C 1.38236 * 120.00069 * 0.51152 * 8 7 6
10 10 C 1.38231 * 119.99973 * 359.74763 * 9 8 7
11 11 C 1.38233 * 120.00242 * 359.97438 * 10 9 8
12 12 C 1.34783 * 120.00095 * 89.99194 * 4 3 2
13 13 O 1.21585 * 119.99991 * 179.97438 * 12 4 3
14 14 N 1.34779 * 119.99707 * 0.02562 * 12 4 3
15 15 C 1.46504 * 119.99730 * 179.97438 * 14 12 4
16 16 C 1.53081 * 109.43848 * 84.79387 * 15 14 12
17 17 C 1.53190 * 109.29209 * 181.23616 * 16 15 14
18 18 N 1.46921 * 108.89311 * 305.57883 * 17 16 15
19 19 C 1.36940 * 120.63187 * 233.51481 * 18 17 16
20 20 H 1.08001 * 120.00319 * 152.61971 * 19 18 17
21 21 C 1.38813 * 119.99903 * 332.62203 * 19 18 17
22 22 N 1.31624 * 120.00070 * 159.34992 * 21 19 18
23 23 Si 1.86800 * 120.00077 * 339.35529 * 21 19 18
24 24 H 1.48494 * 109.47321 * 92.87851 * 23 21 19
25 25 H 1.48501 * 109.47194 * 212.88430 * 23 21 19
26 26 H 1.48509 * 109.46983 * 332.87654 * 23 21 19
27 27 C 1.46923 * 118.74178 * 53.54201 * 18 17 16
28 28 C 1.53035 * 109.45960 * 204.99782 * 15 14 12
29 29 H 1.09001 * 109.47530 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.47087 * 300.00714 * 1 2 3
31 31 H 1.09001 * 109.47303 * 60.00100 * 1 2 3
32 32 H 1.08991 * 109.46870 * 239.99343 * 2 1 3
33 33 H 1.09004 * 109.46721 * 119.99174 * 2 1 3
34 34 H 1.08996 * 109.46912 * 15.00296 * 5 4 3
35 35 H 1.09007 * 109.47003 * 134.99802 * 5 4 3
36 36 H 1.07994 * 120.00436 * 0.02562 * 7 6 5
37 37 H 1.08001 * 119.99456 * 180.23186 * 8 7 6
38 38 H 1.08001 * 120.00020 * 179.72047 * 9 8 7
39 39 H 1.08001 * 120.00226 * 179.97438 * 10 9 8
40 40 H 1.08001 * 120.00287 * 179.97438 * 11 10 9
41 41 H 0.96998 * 120.00063 * 359.97438 * 14 12 4
42 42 H 1.08998 * 109.46073 * 324.97324 * 15 14 12
43 43 H 1.08992 * 109.38800 * 61.36034 * 16 15 14
44 44 H 1.09002 * 109.61927 * 301.25313 * 16 15 14
45 45 H 1.08999 * 109.58729 * 185.71870 * 17 16 15
46 46 H 1.09004 * 109.58886 * 65.43758 * 17 16 15
47 47 H 0.97001 * 119.99914 * 180.02562 * 22 21 19
48 48 H 1.09004 * 109.59094 * 66.17180 * 27 18 17
49 49 H 1.09001 * 109.59077 * 186.46452 * 27 18 17
50 50 H 1.09002 * 109.49848 * 58.67960 * 28 15 14
51 51 H 1.09002 * 109.52425 * 298.59433 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 7 3.4179 1.4591 -0.0006
5 6 4.1486 1.5169 1.2679
6 6 4.6082 2.9299 1.5189
7 6 5.8440 3.3465 1.0604
8 6 6.2635 4.6442 1.2864
9 6 5.4518 5.5220 1.9802
10 6 4.2183 5.1038 2.4434
11 6 3.7963 3.8079 2.2123
12 6 4.0892 1.5123 -1.1681
13 8 5.3013 1.6088 -1.1686
14 7 3.4169 1.4596 -2.3350
15 6 4.1466 1.5180 -3.6041
16 6 4.6269 0.1142 -3.9806
17 6 5.4157 0.1839 -5.2920
18 7 4.5839 0.8343 -6.3135
19 6 4.3582 0.2269 -7.5199
20 1 3.4546 0.4407 -8.0715
21 6 5.2908 -0.6637 -8.0338
22 7 4.9301 -1.5402 -8.9471
23 14 7.0576 -0.6183 -7.4291
24 1 7.2212 -1.5759 -6.3060
25 1 7.9702 -0.9955 -8.5382
26 1 7.3860 0.7528 -6.9625
27 6 3.9992 2.1490 -6.0165
28 6 3.2230 2.0571 -4.6988
29 1 -0.3634 -1.0276 0.0005
30 1 -0.3634 0.5140 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8899
33 1 1.8933 -0.5137 0.8901
34 1 3.4941 1.1981 2.0790
35 1 5.0145 0.8564 1.2188
36 1 6.4799 2.6595 0.5219
37 1 7.2274 4.9707 0.9249
38 1 5.7814 6.5345 2.1608
39 1 3.5843 5.7895 2.9857
40 1 2.8328 3.4810 2.5745
41 1 2.4499 1.3831 -2.3346
42 1 5.0076 2.1779 -3.4978
43 1 3.7652 -0.5408 -4.1088
44 1 5.2679 -0.2774 -3.1908
45 1 5.6731 -0.8239 -5.6176
46 1 6.3269 0.7626 -5.1400
47 1 5.5817 -2.1627 -9.3059
48 1 4.7936 2.8893 -5.9217
49 1 3.3237 2.4389 -6.8213
50 1 2.8650 3.0475 -4.4177
51 1 2.3740 1.3849 -4.8228
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000838341679.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:33:54
Heat of formation + Delta-G solvation = 9.961637 kcal
Electronic energy + Delta-G solvation = -31531.009089 eV
Core-core repulsion = 27432.594278 eV
Total energy + Delta-G solvation = -4098.414811 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.49505 -40.08100 -39.35096 -38.47621 -36.21942 -34.96304 -34.09003 -32.68667
-31.99791 -31.74981 -31.70385 -30.67564 -27.54169 -26.29350 -24.45797 -24.00751
-23.59135 -23.43960 -22.51115 -21.50513 -21.21070 -19.84730 -18.86881 -18.35630
-17.61393 -17.30783 -16.85257 -16.56069 -16.14027 -16.01773 -15.93414 -15.89324
-15.61003 -15.41064 -15.34954 -14.87442 -14.54879 -14.28578 -14.12664 -14.05817
-13.88940 -13.69693 -13.46623 -13.40845 -13.17214 -13.00889 -12.71562 -12.58600
-12.56931 -12.23958 -12.18007 -12.06282 -11.85377 -11.77280 -11.58527 -11.50505
-11.42456 -11.10160 -10.76127 -10.33597 -9.85979 -9.77914 -9.66703 -8.98059
-8.17901 -5.49235 0.18461 0.53873 0.97796 1.28531 1.39483 1.48145
1.94183 2.22223 2.40008 2.92603 3.03376 3.32176 3.63401 3.78607
3.86861 3.91738 3.93180 4.05111 4.17417 4.19092 4.21920 4.28212
4.28915 4.31927 4.41000 4.45032 4.50786 4.64633 4.66433 4.68491
4.75837 4.82462 4.90038 4.93975 4.95981 5.00137 5.05710 5.10362
5.13459 5.19192 5.24015 5.35529 5.41932 5.50129 5.57726 5.64997
5.69417 5.85795 5.93609 6.12330 6.13312 6.89332 6.92033 7.40418
7.60364 8.01723 9.01691
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012729 B = 0.002900 C = 0.002574
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2199.191062 B = 9653.722326 C =10874.906097
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.014 3.986
3 O -0.148 6.148
4 N -0.488 5.488
5 C 0.179 3.821
6 C -0.123 4.123
7 C -0.102 4.102
8 C -0.143 4.143
9 C -0.118 4.118
10 C -0.134 4.134
11 C -0.101 4.101
12 C 0.709 3.291
13 O -0.598 6.598
14 N -0.723 5.723
15 C 0.179 3.821
16 C -0.128 4.128
17 C 0.127 3.873
18 N -0.619 5.619
19 C -0.244 4.244
20 H 0.061 0.939
21 C -0.031 4.031
22 N -0.954 5.954
23 Si 0.938 3.062
24 H -0.280 1.280
25 H -0.309 1.309
26 H -0.265 1.265
27 C 0.146 3.854
28 C -0.125 4.125
29 H 0.092 0.908
30 H 0.073 0.927
31 H 0.064 0.936
32 H 0.049 0.951
33 H 0.070 0.930
34 H 0.122 0.878
35 H 0.084 0.916
36 H 0.113 0.887
37 H 0.127 0.873
38 H 0.141 0.859
39 H 0.145 0.855
40 H 0.139 0.861
41 H 0.407 0.593
42 H 0.069 0.931
43 H 0.062 0.938
44 H 0.059 0.941
45 H 0.050 0.950
46 H 0.027 0.973
47 H 0.261 0.739
48 H 0.034 0.966
49 H 0.070 0.930
50 H 0.091 0.909
51 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.768 9.911 28.528 31.183
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.064 4.064
3 O -0.152 6.152
4 N -0.269 5.269
5 C 0.059 3.941
6 C -0.124 4.124
7 C -0.121 4.121
8 C -0.161 4.161
9 C -0.137 4.137
10 C -0.151 4.151
11 C -0.119 4.119
12 C 0.411 3.589
13 O -0.478 6.478
14 N -0.377 5.377
15 C 0.073 3.927
16 C -0.168 4.168
17 C 0.001 3.999
18 N -0.343 5.343
19 C -0.374 4.374
20 H 0.079 0.921
21 C -0.226 4.226
22 N -0.600 5.600
23 Si 0.768 3.232
24 H -0.207 1.207
25 H -0.238 1.238
26 H -0.189 1.189
27 C 0.021 3.979
28 C -0.164 4.164
29 H 0.111 0.889
30 H 0.092 0.908
31 H 0.083 0.917
32 H 0.067 0.933
33 H 0.088 0.912
34 H 0.140 0.860
35 H 0.102 0.898
36 H 0.131 0.869
37 H 0.145 0.855
38 H 0.159 0.841
39 H 0.163 0.837
40 H 0.157 0.843
41 H 0.243 0.757
42 H 0.087 0.913
43 H 0.080 0.920
44 H 0.077 0.923
45 H 0.069 0.931
46 H 0.045 0.955
47 H 0.070 0.930
48 H 0.052 0.948
49 H 0.088 0.912
50 H 0.110 0.890
51 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -6.977 10.040 28.417 30.936
hybrid contribution 0.700 -0.808 -0.499 1.180
sum -6.277 9.232 27.918 30.067
Atomic orbital electron populations
1.21731 0.90391 1.04129 1.03683 1.23307 0.97221 0.84143 1.01688
1.90644 1.01024 1.26818 1.96755 1.49291 0.95157 1.77644 1.04776
1.20551 0.96254 0.93579 0.83672 1.20187 0.94987 0.96982 1.00228
1.21329 0.96523 0.96703 0.97549 1.21401 1.00889 0.93884 0.99960
1.21495 0.94632 1.00266 0.97258 1.21455 0.96729 0.96325 1.00631
1.21288 0.99379 0.93606 0.97642 1.16032 0.84657 0.77679 0.80485
1.90919 1.12208 1.59293 1.85354 1.45198 1.10753 1.77960 1.03808
1.20592 0.94815 0.95835 0.81408 1.22232 1.00232 0.97792 0.96562
1.21264 0.93179 0.96428 0.89005 1.44530 1.59032 1.18263 1.12522
1.18904 1.01688 1.20407 0.96403 0.92136 1.25825 1.01195 0.98030
0.97567 1.69947 1.35211 1.20804 1.34063 0.86047 0.82526 0.78625
0.76041 1.20694 1.23777 1.18915 1.21077 0.95810 0.85450 0.95612
1.22146 0.98186 1.02010 0.94070 0.88912 0.90787 0.91694 0.93283
0.91155 0.85967 0.89790 0.86856 0.85502 0.84087 0.83675 0.84305
0.75686 0.91271 0.91965 0.92276 0.93144 0.95531 0.92961 0.94782
0.91181 0.89029 0.91168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.40 10.28 71.98 0.74 -0.66 16
2 C 0.01 0.20 7.04 71.98 0.51 0.71 16
3 O -0.15 -2.76 10.19 -38.79 -0.40 -3.16 16
4 N -0.49 -10.98 3.01 -482.28 -1.45 -12.43 16
5 C 0.18 3.41 5.85 85.63 0.50 3.91 16
6 C -0.12 -2.59 5.25 -19.87 -0.10 -2.69 16
7 C -0.10 -2.50 8.78 22.27 0.20 -2.31 16
8 C -0.14 -3.06 10.05 22.27 0.22 -2.83 16
9 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16
10 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16
11 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16
12 C 0.71 20.52 8.20 179.05 1.47 21.99 16
13 O -0.60 -20.98 13.56 -3.98 -0.05 -21.03 16
14 N -0.72 -19.56 5.05 -457.61 -2.31 -21.88 16
15 C 0.18 5.67 2.41 45.03 0.11 5.78 16
16 C -0.13 -4.68 5.66 30.68 0.17 -4.51 16
17 C 0.13 5.64 4.20 86.36 0.36 6.01 16
18 N -0.62 -29.15 2.77 -699.09 -1.94 -31.08 16
19 C -0.24 -13.80 10.03 84.03 0.84 -12.96 16
20 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16
21 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16
22 N -0.95 -60.16 13.97 21.65 0.30 -59.85 16
23 Si 0.94 47.88 24.34 68.60 1.67 49.55 16
24 H -0.28 -13.74 6.62 99.48 0.66 -13.08 16
25 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16
26 H -0.26 -13.11 6.64 99.48 0.66 -12.45 16
27 C 0.15 5.44 6.52 86.37 0.56 6.00 16
28 C -0.12 -3.70 5.55 30.67 0.17 -3.52 16
29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16
30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16
31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16
34 H 0.12 1.53 8.08 -2.39 -0.02 1.51 16
35 H 0.08 1.71 7.84 -2.38 -0.02 1.69 16
36 H 0.11 3.20 6.78 -2.91 -0.02 3.18 16
37 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16
38 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16
39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16
40 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16
41 H 0.41 9.37 7.67 -92.71 -0.71 8.65 16
42 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16
43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16
45 H 0.05 2.47 4.50 -2.39 -0.01 2.46 16
46 H 0.03 1.19 7.07 -2.38 -0.02 1.18 16
47 H 0.26 15.72 8.31 -92.71 -0.77 14.94 16
48 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16
49 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16
50 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16
51 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
Total: -1.00 -72.12 405.56 2.79 -69.33
By element:
Atomic # 1 Polarization: 22.23 SS G_CDS: 0.11 Total: 22.34 kcal
Atomic # 6 Polarization: 1.36 SS G_CDS: 6.86 Total: 8.22 kcal
Atomic # 7 Polarization: -119.85 SS G_CDS: -5.40 Total: -125.25 kcal
Atomic # 8 Polarization: -23.74 SS G_CDS: -0.45 Total: -24.19 kcal
Atomic # 14 Polarization: 47.88 SS G_CDS: 1.67 Total: 49.55 kcal
Total: -72.12 2.79 -69.33 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000838341679.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.290 kcal
(2) G-P(sol) polarization free energy of solvation -72.121 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.962 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds