Wall clock time and date at job start Wed Apr 1 2020 05:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.46911 * 2 1 4 4 N 1.41601 * 113.99703 * 180.02562 * 3 2 1 5 5 C 1.46501 * 120.00031 * 269.99455 * 4 3 2 6 6 C 1.50699 * 109.47073 * 254.99951 * 5 4 3 7 7 C 1.38235 * 119.99765 * 269.72329 * 6 5 4 8 8 C 1.38241 * 119.99391 * 179.76559 * 7 6 5 9 9 C 1.38236 * 120.00069 * 0.51152 * 8 7 6 10 10 C 1.38231 * 119.99973 * 359.74763 * 9 8 7 11 11 C 1.38233 * 120.00242 * 359.97438 * 10 9 8 12 12 C 1.34783 * 120.00095 * 89.99194 * 4 3 2 13 13 O 1.21585 * 119.99991 * 179.97438 * 12 4 3 14 14 N 1.34779 * 119.99707 * 0.02562 * 12 4 3 15 15 C 1.46504 * 119.99730 * 179.97438 * 14 12 4 16 16 C 1.53081 * 109.43848 * 84.79387 * 15 14 12 17 17 C 1.53190 * 109.29209 * 181.23616 * 16 15 14 18 18 N 1.46921 * 108.89311 * 305.57883 * 17 16 15 19 19 C 1.36940 * 120.63187 * 233.51481 * 18 17 16 20 20 H 1.08001 * 120.00319 * 152.61971 * 19 18 17 21 21 C 1.38813 * 119.99903 * 332.62203 * 19 18 17 22 22 N 1.31624 * 120.00070 * 159.34992 * 21 19 18 23 23 Si 1.86800 * 120.00077 * 339.35529 * 21 19 18 24 24 H 1.48494 * 109.47321 * 92.87851 * 23 21 19 25 25 H 1.48501 * 109.47194 * 212.88430 * 23 21 19 26 26 H 1.48509 * 109.46983 * 332.87654 * 23 21 19 27 27 C 1.46923 * 118.74178 * 53.54201 * 18 17 16 28 28 C 1.53035 * 109.45960 * 204.99782 * 15 14 12 29 29 H 1.09001 * 109.47530 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47087 * 300.00714 * 1 2 3 31 31 H 1.09001 * 109.47303 * 60.00100 * 1 2 3 32 32 H 1.08991 * 109.46870 * 239.99343 * 2 1 3 33 33 H 1.09004 * 109.46721 * 119.99174 * 2 1 3 34 34 H 1.08996 * 109.46912 * 15.00296 * 5 4 3 35 35 H 1.09007 * 109.47003 * 134.99802 * 5 4 3 36 36 H 1.07994 * 120.00436 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.99456 * 180.23186 * 8 7 6 38 38 H 1.08001 * 120.00020 * 179.72047 * 9 8 7 39 39 H 1.08001 * 120.00226 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.00287 * 179.97438 * 11 10 9 41 41 H 0.96998 * 120.00063 * 359.97438 * 14 12 4 42 42 H 1.08998 * 109.46073 * 324.97324 * 15 14 12 43 43 H 1.08992 * 109.38800 * 61.36034 * 16 15 14 44 44 H 1.09002 * 109.61927 * 301.25313 * 16 15 14 45 45 H 1.08999 * 109.58729 * 185.71870 * 17 16 15 46 46 H 1.09004 * 109.58886 * 65.43758 * 17 16 15 47 47 H 0.97001 * 119.99914 * 180.02562 * 22 21 19 48 48 H 1.09004 * 109.59094 * 66.17180 * 27 18 17 49 49 H 1.09001 * 109.59077 * 186.46452 * 27 18 17 50 50 H 1.09002 * 109.49848 * 58.67960 * 28 15 14 51 51 H 1.09002 * 109.52425 * 298.59433 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 7 3.4179 1.4591 -0.0006 5 6 4.1486 1.5169 1.2679 6 6 4.6082 2.9299 1.5189 7 6 5.8440 3.3465 1.0604 8 6 6.2635 4.6442 1.2864 9 6 5.4518 5.5220 1.9802 10 6 4.2183 5.1038 2.4434 11 6 3.7963 3.8079 2.2123 12 6 4.0892 1.5123 -1.1681 13 8 5.3013 1.6088 -1.1686 14 7 3.4169 1.4596 -2.3350 15 6 4.1466 1.5180 -3.6041 16 6 4.6269 0.1142 -3.9806 17 6 5.4157 0.1839 -5.2920 18 7 4.5839 0.8343 -6.3135 19 6 4.3582 0.2269 -7.5199 20 1 3.4546 0.4407 -8.0715 21 6 5.2908 -0.6637 -8.0338 22 7 4.9301 -1.5402 -8.9471 23 14 7.0576 -0.6183 -7.4291 24 1 7.2212 -1.5759 -6.3060 25 1 7.9702 -0.9955 -8.5382 26 1 7.3860 0.7528 -6.9625 27 6 3.9992 2.1490 -6.0165 28 6 3.2230 2.0571 -4.6988 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.4941 1.1981 2.0790 35 1 5.0145 0.8564 1.2188 36 1 6.4799 2.6595 0.5219 37 1 7.2274 4.9707 0.9249 38 1 5.7814 6.5345 2.1608 39 1 3.5843 5.7895 2.9857 40 1 2.8328 3.4810 2.5745 41 1 2.4499 1.3831 -2.3346 42 1 5.0076 2.1779 -3.4978 43 1 3.7652 -0.5408 -4.1088 44 1 5.2679 -0.2774 -3.1908 45 1 5.6731 -0.8239 -5.6176 46 1 6.3269 0.7626 -5.1400 47 1 5.5817 -2.1627 -9.3059 48 1 4.7936 2.8893 -5.9217 49 1 3.3237 2.4389 -6.8213 50 1 2.8650 3.0475 -4.4177 51 1 2.3740 1.3849 -4.8228 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838341679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:54 Heat of formation + Delta-G solvation = 9.961637 kcal Electronic energy + Delta-G solvation = -31531.009089 eV Core-core repulsion = 27432.594278 eV Total energy + Delta-G solvation = -4098.414811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.49505 -40.08100 -39.35096 -38.47621 -36.21942 -34.96304 -34.09003 -32.68667 -31.99791 -31.74981 -31.70385 -30.67564 -27.54169 -26.29350 -24.45797 -24.00751 -23.59135 -23.43960 -22.51115 -21.50513 -21.21070 -19.84730 -18.86881 -18.35630 -17.61393 -17.30783 -16.85257 -16.56069 -16.14027 -16.01773 -15.93414 -15.89324 -15.61003 -15.41064 -15.34954 -14.87442 -14.54879 -14.28578 -14.12664 -14.05817 -13.88940 -13.69693 -13.46623 -13.40845 -13.17214 -13.00889 -12.71562 -12.58600 -12.56931 -12.23958 -12.18007 -12.06282 -11.85377 -11.77280 -11.58527 -11.50505 -11.42456 -11.10160 -10.76127 -10.33597 -9.85979 -9.77914 -9.66703 -8.98059 -8.17901 -5.49235 0.18461 0.53873 0.97796 1.28531 1.39483 1.48145 1.94183 2.22223 2.40008 2.92603 3.03376 3.32176 3.63401 3.78607 3.86861 3.91738 3.93180 4.05111 4.17417 4.19092 4.21920 4.28212 4.28915 4.31927 4.41000 4.45032 4.50786 4.64633 4.66433 4.68491 4.75837 4.82462 4.90038 4.93975 4.95981 5.00137 5.05710 5.10362 5.13459 5.19192 5.24015 5.35529 5.41932 5.50129 5.57726 5.64997 5.69417 5.85795 5.93609 6.12330 6.13312 6.89332 6.92033 7.40418 7.60364 8.01723 9.01691 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.002900 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.191062 B = 9653.722326 C =10874.906097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.014 3.986 3 O -0.148 6.148 4 N -0.488 5.488 5 C 0.179 3.821 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.143 4.143 9 C -0.118 4.118 10 C -0.134 4.134 11 C -0.101 4.101 12 C 0.709 3.291 13 O -0.598 6.598 14 N -0.723 5.723 15 C 0.179 3.821 16 C -0.128 4.128 17 C 0.127 3.873 18 N -0.619 5.619 19 C -0.244 4.244 20 H 0.061 0.939 21 C -0.031 4.031 22 N -0.954 5.954 23 Si 0.938 3.062 24 H -0.280 1.280 25 H -0.309 1.309 26 H -0.265 1.265 27 C 0.146 3.854 28 C -0.125 4.125 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.407 0.593 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.261 0.739 48 H 0.034 0.966 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 9.911 28.528 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 O -0.152 6.152 4 N -0.269 5.269 5 C 0.059 3.941 6 C -0.124 4.124 7 C -0.121 4.121 8 C -0.161 4.161 9 C -0.137 4.137 10 C -0.151 4.151 11 C -0.119 4.119 12 C 0.411 3.589 13 O -0.478 6.478 14 N -0.377 5.377 15 C 0.073 3.927 16 C -0.168 4.168 17 C 0.001 3.999 18 N -0.343 5.343 19 C -0.374 4.374 20 H 0.079 0.921 21 C -0.226 4.226 22 N -0.600 5.600 23 Si 0.768 3.232 24 H -0.207 1.207 25 H -0.238 1.238 26 H -0.189 1.189 27 C 0.021 3.979 28 C -0.164 4.164 29 H 0.111 0.889 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.157 0.843 41 H 0.243 0.757 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.088 0.912 50 H 0.110 0.890 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.977 10.040 28.417 30.936 hybrid contribution 0.700 -0.808 -0.499 1.180 sum -6.277 9.232 27.918 30.067 Atomic orbital electron populations 1.21731 0.90391 1.04129 1.03683 1.23307 0.97221 0.84143 1.01688 1.90644 1.01024 1.26818 1.96755 1.49291 0.95157 1.77644 1.04776 1.20551 0.96254 0.93579 0.83672 1.20187 0.94987 0.96982 1.00228 1.21329 0.96523 0.96703 0.97549 1.21401 1.00889 0.93884 0.99960 1.21495 0.94632 1.00266 0.97258 1.21455 0.96729 0.96325 1.00631 1.21288 0.99379 0.93606 0.97642 1.16032 0.84657 0.77679 0.80485 1.90919 1.12208 1.59293 1.85354 1.45198 1.10753 1.77960 1.03808 1.20592 0.94815 0.95835 0.81408 1.22232 1.00232 0.97792 0.96562 1.21264 0.93179 0.96428 0.89005 1.44530 1.59032 1.18263 1.12522 1.18904 1.01688 1.20407 0.96403 0.92136 1.25825 1.01195 0.98030 0.97567 1.69947 1.35211 1.20804 1.34063 0.86047 0.82526 0.78625 0.76041 1.20694 1.23777 1.18915 1.21077 0.95810 0.85450 0.95612 1.22146 0.98186 1.02010 0.94070 0.88912 0.90787 0.91694 0.93283 0.91155 0.85967 0.89790 0.86856 0.85502 0.84087 0.83675 0.84305 0.75686 0.91271 0.91965 0.92276 0.93144 0.95531 0.92961 0.94782 0.91181 0.89029 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 10.28 71.98 0.74 -0.66 16 2 C 0.01 0.20 7.04 71.98 0.51 0.71 16 3 O -0.15 -2.76 10.19 -38.79 -0.40 -3.16 16 4 N -0.49 -10.98 3.01 -482.28 -1.45 -12.43 16 5 C 0.18 3.41 5.85 85.63 0.50 3.91 16 6 C -0.12 -2.59 5.25 -19.87 -0.10 -2.69 16 7 C -0.10 -2.50 8.78 22.27 0.20 -2.31 16 8 C -0.14 -3.06 10.05 22.27 0.22 -2.83 16 9 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 10 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 11 C -0.10 -1.75 9.70 22.27 0.22 -1.54 16 12 C 0.71 20.52 8.20 179.05 1.47 21.99 16 13 O -0.60 -20.98 13.56 -3.98 -0.05 -21.03 16 14 N -0.72 -19.56 5.05 -457.61 -2.31 -21.88 16 15 C 0.18 5.67 2.41 45.03 0.11 5.78 16 16 C -0.13 -4.68 5.66 30.68 0.17 -4.51 16 17 C 0.13 5.64 4.20 86.36 0.36 6.01 16 18 N -0.62 -29.15 2.77 -699.09 -1.94 -31.08 16 19 C -0.24 -13.80 10.03 84.03 0.84 -12.96 16 20 H 0.06 3.66 8.06 -2.91 -0.02 3.64 16 21 C -0.03 -1.84 5.23 84.86 0.44 -1.40 16 22 N -0.95 -60.16 13.97 21.65 0.30 -59.85 16 23 Si 0.94 47.88 24.34 68.60 1.67 49.55 16 24 H -0.28 -13.74 6.62 99.48 0.66 -13.08 16 25 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 26 H -0.26 -13.11 6.64 99.48 0.66 -12.45 16 27 C 0.15 5.44 6.52 86.37 0.56 6.00 16 28 C -0.12 -3.70 5.55 30.67 0.17 -3.52 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.12 1.53 8.08 -2.39 -0.02 1.51 16 35 H 0.08 1.71 7.84 -2.38 -0.02 1.69 16 36 H 0.11 3.20 6.78 -2.91 -0.02 3.18 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 39 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.41 9.37 7.67 -92.71 -0.71 8.65 16 42 H 0.07 2.45 7.58 -2.39 -0.02 2.43 16 43 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.05 2.47 4.50 -2.39 -0.01 2.46 16 46 H 0.03 1.19 7.07 -2.38 -0.02 1.18 16 47 H 0.26 15.72 8.31 -92.71 -0.77 14.94 16 48 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 49 H 0.07 2.58 7.93 -2.39 -0.02 2.56 16 50 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -72.12 405.56 2.79 -69.33 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.11 Total: 22.34 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.86 Total: 8.22 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.40 Total: -125.25 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.45 Total: -24.19 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.67 Total: 49.55 kcal Total: -72.12 2.79 -69.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838341679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.290 kcal (2) G-P(sol) polarization free energy of solvation -72.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds