Wall clock time and date at job start Wed Apr 1 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47129 * 254.27767 * 3 2 1 5 5 C 1.37092 * 119.99902 * 271.05788 * 4 3 2 6 6 H 1.08003 * 119.99834 * 140.35781 * 5 4 3 7 7 C 1.38952 * 120.00304 * 320.35844 * 5 4 3 8 8 N 1.31414 * 120.00083 * 161.47378 * 7 5 4 9 9 Si 1.86798 * 119.99980 * 341.46767 * 7 5 4 10 10 H 1.48508 * 109.46816 * 95.48318 * 9 7 5 11 11 H 1.48498 * 109.47554 * 215.48242 * 9 7 5 12 12 H 1.48502 * 109.47198 * 335.48761 * 9 7 5 13 13 C 1.34769 * 119.99920 * 91.06224 * 4 3 2 14 14 O 1.21296 * 120.00185 * 183.58441 * 13 4 3 15 15 C 1.50703 * 119.99984 * 3.58181 * 13 4 3 16 16 H 1.09000 * 109.47380 * 27.67418 * 15 13 4 17 17 C 1.53006 * 109.47217 * 267.67828 * 15 13 4 18 18 C 1.52995 * 109.47359 * 147.67872 * 15 13 4 19 19 C 1.50701 * 109.47362 * 184.99914 * 18 15 13 20 20 C 1.39865 * 126.04127 * 269.97425 * 19 18 15 21 21 C 1.50700 * 125.89660 * 0.05475 * 20 19 18 22 22 N 1.30836 * 108.20680 * 180.02562 * 20 19 18 23 23 N 1.40092 * 108.19891 * 359.77751 * 22 20 19 24 24 C 1.46505 * 126.03317 * 180.23915 * 23 22 20 25 25 O 1.42909 * 109.46815 * 270.15276 * 24 23 22 26 26 C 1.42895 * 113.99580 * 180.02562 * 25 24 23 27 27 C 1.53008 * 109.46752 * 179.97438 * 26 25 24 28 28 C 1.34940 * 107.92656 * 0.36669 * 23 22 20 29 29 C 1.50702 * 126.12581 * 179.90575 * 28 23 22 30 30 H 4.40639 * 5.51466 * 180.02562 * 4 1 2 31 31 H 1.09004 * 109.46795 * 134.27984 * 3 2 1 32 32 H 1.08995 * 109.47356 * 14.28542 * 3 2 1 33 33 H 0.97003 * 120.00041 * 179.97438 * 8 7 5 34 34 H 1.09009 * 109.46757 * 294.28589 * 17 15 13 35 35 H 1.08994 * 109.47276 * 54.28176 * 17 15 13 36 36 H 1.08994 * 109.47284 * 174.28794 * 17 15 13 37 37 H 1.08995 * 109.47588 * 64.99800 * 18 15 13 38 38 H 1.09008 * 109.46902 * 304.99885 * 18 15 13 39 39 H 1.08996 * 109.46984 * 90.00408 * 21 20 19 40 40 H 1.09005 * 109.47221 * 209.99767 * 21 20 19 41 41 H 1.09000 * 109.47159 * 329.99500 * 21 20 19 42 42 H 1.08996 * 109.47428 * 30.15241 * 24 23 22 43 43 H 1.08994 * 109.47036 * 150.15436 * 24 23 22 44 44 H 1.09000 * 109.47373 * 299.99252 * 26 25 24 45 45 H 1.09003 * 109.47947 * 60.00013 * 26 25 24 46 46 H 1.08996 * 109.47049 * 299.99490 * 27 26 25 47 47 H 1.09003 * 109.47120 * 59.99856 * 27 26 25 48 48 H 1.08998 * 109.46769 * 179.97438 * 27 26 25 49 49 H 1.09008 * 109.47093 * 269.69119 * 29 28 23 50 50 H 1.09002 * 109.47104 * 29.68805 * 29 28 23 51 51 H 1.09001 * 109.47064 * 149.69141 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3752 1.3295 5 6 3.3413 1.6950 1.6370 6 1 3.0747 2.0702 2.6140 7 6 3.8944 2.5501 0.6916 8 7 3.7652 3.8508 0.8268 9 14 4.8218 1.8506 -0.7713 10 1 3.9050 1.7474 -1.9351 11 1 5.9560 2.7462 -1.1127 12 1 5.3413 0.5022 -0.4293 13 6 3.3796 -0.5778 2.2503 14 8 3.7213 -0.2645 3.3712 15 6 3.2294 -2.0328 1.8874 16 1 3.4069 -2.1611 0.8196 17 6 1.8130 -2.5000 2.2287 18 6 4.2441 -2.8626 2.6764 19 6 4.1783 -4.2988 2.2247 20 6 3.3582 -5.2947 2.7649 21 6 2.3843 -5.1172 3.9011 22 7 3.5821 -6.4068 2.1131 23 7 4.5497 -6.1520 1.1326 24 6 5.0858 -7.1250 0.1774 25 8 6.2300 -7.7674 0.7435 26 6 6.8328 -8.7404 -0.1120 27 6 8.0417 -9.3597 0.5923 28 6 4.9027 -4.8529 1.2250 29 6 5.9172 -4.1445 0.3648 30 1 -1.0501 -0.0002 0.0000 31 1 3.0089 0.7183 -0.7358 32 1 3.0098 -0.9950 -0.2536 33 1 4.1516 4.4478 0.1670 34 1 1.6700 -2.4674 3.3089 35 1 1.0880 -1.8445 1.7463 36 1 1.6719 -3.5210 1.8743 37 1 4.0120 -2.8053 3.7398 38 1 5.2468 -2.4723 2.5018 39 1 1.4107 -4.8303 3.5037 40 1 2.2909 -6.0546 4.4494 41 1 2.7468 -4.3384 4.5721 42 1 4.3240 -7.8715 -0.0470 43 1 5.3738 -6.6125 -0.7403 44 1 6.1074 -9.5205 -0.3428 45 1 7.1572 -8.2611 -1.0357 46 1 8.7670 -8.5794 0.8228 47 1 7.7178 -9.8390 1.5162 48 1 8.5012 -10.1021 -0.0600 49 1 6.9011 -4.2177 0.8283 50 1 5.9447 -4.6083 -0.6213 51 1 5.6397 -3.0951 0.2651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868041173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:00 Heat of formation + Delta-G solvation = 60.755765 kcal Electronic energy + Delta-G solvation = -31406.646186 eV Core-core repulsion = 27310.433974 eV Total energy + Delta-G solvation = -4096.212212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46967 -39.14883 -38.42815 -35.55719 -34.74483 -33.66704 -32.62031 -31.98379 -31.56600 -30.94799 -28.99809 -27.89616 -26.78292 -26.08299 -25.31157 -24.29915 -23.29236 -22.09379 -19.67216 -19.42796 -18.69439 -18.14482 -17.50207 -16.98056 -16.66250 -16.53043 -16.16683 -15.75711 -15.09946 -14.62120 -14.27462 -14.05334 -13.96161 -13.82327 -13.40870 -13.37890 -13.17260 -13.10139 -12.94143 -12.79484 -12.70972 -12.56495 -12.34839 -12.27626 -12.12752 -11.90025 -11.79723 -11.75398 -11.57416 -11.41744 -11.04028 -10.84009 -10.72561 -10.56187 -10.31385 -10.18398 -10.16605 -9.73361 -9.46151 -9.13813 -9.09127 -8.49483 -8.15844 -7.84145 -6.37647 -3.99866 1.67409 2.21599 2.78285 2.98339 3.15971 3.17724 3.20661 3.38423 3.48387 3.75358 4.12390 4.23274 4.50570 4.53140 4.56520 4.58733 4.72493 4.83968 4.85914 4.89639 5.00816 5.08588 5.21118 5.22775 5.35912 5.37623 5.43133 5.43842 5.56278 5.58987 5.64726 5.67591 5.73081 5.78744 5.80723 5.89689 5.97036 6.11422 6.20020 6.20728 6.24259 6.37245 6.43231 6.52313 6.56124 6.66448 6.80066 7.05806 7.54640 7.76065 8.12964 8.30229 8.49192 8.95440 9.29861 9.74686 10.74631 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013043 B = 0.002967 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.264381 B = 9433.811241 C =10371.657104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.170 4.170 3 C 0.191 3.809 4 N -0.467 5.467 5 C -0.313 4.313 6 H 0.105 0.895 7 C 0.060 3.940 8 N -0.865 5.865 9 Si 0.869 3.131 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.260 1.260 13 C 0.482 3.518 14 O -0.554 6.554 15 C -0.104 4.104 16 H 0.077 0.923 17 C -0.138 4.138 18 C -0.021 4.021 19 C -0.217 4.217 20 C 0.093 3.907 21 C -0.077 4.077 22 N -0.295 5.295 23 N -0.375 5.375 24 C 0.314 3.686 25 O -0.403 6.403 26 C 0.066 3.934 27 C -0.152 4.152 28 C 0.093 3.907 29 C -0.095 4.095 30 H 0.212 0.788 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.274 0.726 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.066 0.934 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.558 -23.493 -6.243 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.172 4.172 3 C 0.068 3.932 4 N -0.188 5.188 5 C -0.441 4.441 6 H 0.123 0.877 7 C -0.146 4.146 8 N -0.502 5.502 9 Si 0.697 3.303 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.184 1.184 13 C 0.271 3.729 14 O -0.434 6.434 15 C -0.126 4.126 16 H 0.095 0.905 17 C -0.195 4.195 18 C -0.060 4.060 19 C -0.227 4.227 20 C -0.074 4.074 21 C -0.136 4.136 22 N -0.116 5.116 23 N -0.161 5.161 24 C 0.153 3.847 25 O -0.322 6.322 26 C -0.011 4.011 27 C -0.209 4.209 28 C -0.031 4.031 29 C -0.153 4.153 30 H 0.229 0.771 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.085 0.915 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.661 -24.408 -5.764 25.220 hybrid contribution 0.411 0.583 -1.301 1.484 sum 3.071 -23.825 -7.065 25.040 Atomic orbital electron populations 1.24689 0.95632 1.02502 1.00921 1.23681 0.94823 0.98913 0.99761 1.18918 0.84207 1.00901 0.89154 1.43699 1.57828 1.06964 1.10331 1.19028 1.40825 0.81356 1.02851 0.87724 1.25367 0.96158 0.94985 0.98048 1.69723 1.41987 1.02270 1.36188 0.87046 0.80505 0.80304 0.82451 1.20103 1.21082 1.18443 1.20310 0.80077 0.86381 0.86164 1.90558 1.49332 1.82889 1.20649 1.21314 0.97241 0.93450 1.00625 0.90496 1.21814 0.94873 1.00727 1.02135 1.19709 0.98758 0.87324 1.00206 1.19811 1.03570 0.97819 1.01520 1.22244 0.97540 0.90411 0.97247 1.20332 0.96569 1.02853 0.93806 1.77300 1.08867 1.22523 1.02918 1.48133 1.32294 1.06584 1.29121 1.22032 0.87498 0.89055 0.86067 1.87915 1.44290 1.55764 1.44224 1.22431 0.95270 0.90310 0.93096 1.21750 0.96699 1.00911 1.01519 1.20862 0.98735 0.84991 0.98549 1.20505 0.96648 1.00815 0.97325 0.77073 0.89440 0.89246 0.91604 0.92056 0.92325 0.92359 0.89968 0.91204 0.90155 0.91245 0.89893 0.89880 0.89947 0.92891 0.92897 0.91648 0.91689 0.90735 0.89942 0.91501 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.72 19.02 29.55 0.56 -3.16 16 2 C -0.17 -3.32 12.23 -37.13 -0.45 -3.78 16 3 C 0.19 3.90 4.58 -6.83 -0.03 3.87 16 4 N -0.47 -11.24 2.11 -117.94 -0.25 -11.49 16 5 C -0.31 -8.87 9.36 -14.93 -0.14 -9.01 16 6 H 0.11 3.35 7.92 -52.48 -0.42 2.94 16 7 C 0.06 1.65 5.36 -17.47 -0.09 1.56 16 8 N -0.87 -25.09 13.96 55.50 0.77 -24.32 16 9 Si 0.87 19.87 24.86 -169.99 -4.23 15.64 16 10 H -0.27 -5.87 6.74 56.52 0.38 -5.49 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.48 11.00 6.65 -10.99 -0.07 10.93 16 14 O -0.55 -14.65 16.20 5.54 0.09 -14.56 16 15 C -0.10 -1.81 2.14 -91.77 -0.20 -2.01 16 16 H 0.08 1.24 5.80 -51.93 -0.30 0.93 16 17 C -0.14 -2.15 7.67 37.16 0.29 -1.86 16 18 C -0.02 -0.34 4.13 -27.89 -0.12 -0.45 16 19 C -0.22 -3.18 4.78 -105.05 -0.50 -3.68 16 20 C 0.09 1.34 6.32 -82.41 -0.52 0.81 16 21 C -0.08 -0.90 9.04 36.01 0.33 -0.57 16 22 N -0.29 -4.46 12.58 33.67 0.42 -4.04 16 23 N -0.37 -5.04 3.88 -61.90 -0.24 -5.28 16 24 C 0.31 3.09 7.05 59.85 0.42 3.51 16 25 O -0.40 -4.32 10.57 -35.23 -0.37 -4.69 16 26 C 0.07 0.44 6.66 37.16 0.25 0.69 16 27 C -0.15 -0.93 10.28 37.16 0.38 -0.54 16 28 C 0.09 1.26 6.93 -82.27 -0.57 0.69 16 29 C -0.09 -1.02 9.73 36.01 0.35 -0.67 16 30 H 0.21 2.67 7.80 -54.09 -0.42 2.25 16 31 H 0.09 1.87 3.21 -51.93 -0.17 1.71 16 32 H 0.09 1.52 5.66 -51.93 -0.29 1.22 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.06 0.94 7.88 -51.92 -0.41 0.53 16 35 H 0.06 0.96 6.36 -51.93 -0.33 0.63 16 36 H 0.06 0.81 5.95 -51.93 -0.31 0.50 16 37 H 0.08 1.36 7.13 -51.93 -0.37 0.99 16 38 H 0.07 1.15 7.78 -51.92 -0.40 0.74 16 39 H 0.08 0.86 6.99 -51.93 -0.36 0.50 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.94 7.25 -51.93 -0.38 0.57 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.59 7.04 -51.93 -0.37 0.22 16 44 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 49 H 0.08 0.84 8.14 -51.92 -0.42 0.41 16 50 H 0.07 0.56 7.07 -51.93 -0.37 0.19 16 51 H 0.09 1.01 7.78 -51.93 -0.40 0.61 16 LS Contribution 412.14 15.07 6.21 6.21 Total: -1.00 -35.31 412.14 -5.55 -40.86 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.84 Total: 5.34 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -0.12 Total: -3.67 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.71 Total: -45.13 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.28 Total: -19.25 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.23 Total: 15.64 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.31 -5.55 -40.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.612 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds