Wall clock time and date at job start Wed Apr 1 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47159 * 274.86742 * 3 2 1 5 5 C 1.37091 * 120.00154 * 268.28608 * 4 3 2 6 6 H 1.07994 * 120.00098 * 190.11328 * 5 4 3 7 7 C 1.38957 * 119.99662 * 10.10875 * 5 4 3 8 8 N 1.31412 * 120.00323 * 28.49095 * 7 5 4 9 9 Si 1.86798 * 119.99828 * 208.48425 * 7 5 4 10 10 H 1.48503 * 109.47017 * 60.00557 * 9 7 5 11 11 H 1.48503 * 109.47234 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47561 * 300.00889 * 9 7 5 13 13 C 1.34774 * 119.99580 * 88.28676 * 4 3 2 14 14 O 1.21294 * 120.00547 * 2.80781 * 13 4 3 15 15 C 1.50707 * 119.99437 * 182.80288 * 13 4 3 16 16 H 1.08991 * 109.47270 * 304.14238 * 15 13 4 17 17 C 1.53005 * 109.46790 * 64.14756 * 15 13 4 18 18 C 1.53007 * 109.46727 * 184.14020 * 15 13 4 19 19 C 1.50705 * 109.46604 * 175.00554 * 18 15 13 20 20 C 1.39866 * 126.03573 * 270.15209 * 19 18 15 21 21 C 1.50703 * 125.90285 * 0.02562 * 20 19 18 22 22 N 1.30841 * 108.20290 * 180.24063 * 20 19 18 23 23 N 1.40087 * 108.20124 * 359.77695 * 22 20 19 24 24 C 1.46500 * 126.03553 * 180.02562 * 23 22 20 25 25 O 1.42897 * 109.46763 * 269.97424 * 24 23 22 26 26 C 1.42906 * 114.00046 * 180.02562 * 25 24 23 27 27 C 1.52993 * 109.47238 * 180.02562 * 26 25 24 28 28 C 1.34948 * 107.92796 * 0.02562 * 23 22 20 29 29 C 1.50692 * 126.12959 * 179.97438 * 28 23 22 30 30 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.46922 * 154.86299 * 3 2 1 32 32 H 1.08998 * 109.46710 * 34.87199 * 3 2 1 33 33 H 0.96992 * 120.00354 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46576 * 301.51444 * 17 15 13 35 35 H 1.08996 * 109.47539 * 61.51532 * 17 15 13 36 36 H 1.09000 * 109.46860 * 181.52009 * 17 15 13 37 37 H 1.08995 * 109.47007 * 55.00723 * 18 15 13 38 38 H 1.09003 * 109.47198 * 294.99994 * 18 15 13 39 39 H 1.08996 * 109.47676 * 270.24025 * 21 20 19 40 40 H 1.08998 * 109.47006 * 30.23999 * 21 20 19 41 41 H 1.08997 * 109.46965 * 150.23442 * 21 20 19 42 42 H 1.08999 * 109.47117 * 29.97555 * 24 23 22 43 43 H 1.08998 * 109.46837 * 149.97575 * 24 23 22 44 44 H 1.09001 * 109.46623 * 299.99948 * 26 25 24 45 45 H 1.08997 * 109.46754 * 59.99337 * 26 25 24 46 46 H 1.08997 * 109.47149 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47157 * 299.99481 * 27 26 25 48 48 H 1.08997 * 109.47903 * 59.99901 * 27 26 25 49 49 H 1.09000 * 109.47365 * 90.02682 * 29 28 23 50 50 H 1.09000 * 109.47289 * 210.02710 * 29 28 23 51 51 H 1.09005 * 109.47363 * 330.02701 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1163 1.3762 5 6 3.3959 1.0124 2.1091 6 1 3.9067 0.9342 3.0574 7 6 3.0038 2.2570 1.6316 8 7 1.9576 2.3585 0.8428 9 14 3.9636 3.7861 2.1113 10 1 5.3694 3.6524 1.6519 11 1 3.3460 4.9778 1.4758 12 1 3.9382 3.9438 3.5876 13 6 3.3267 -1.3336 1.9218 14 8 3.1442 -2.3318 1.2573 15 6 3.7685 -1.4545 3.3576 16 1 4.6907 -0.8920 3.5025 17 6 2.6797 -0.8944 4.2750 18 6 4.0111 -2.9273 3.6942 19 6 4.5695 -3.0382 5.0895 20 6 5.9239 -3.0174 5.4378 21 6 7.0803 -2.8795 4.4814 22 7 6.0138 -3.1430 6.7371 23 7 4.7171 -3.2427 7.2578 24 6 4.3656 -3.3955 8.6718 25 8 4.3006 -4.7850 8.9989 26 6 3.9623 -5.0460 10.3626 27 6 3.9224 -6.5571 10.5980 28 6 3.8490 -3.1731 6.2270 29 6 2.3467 -3.2391 6.3245 30 1 -1.0499 0.0002 0.0001 31 1 3.0089 0.9312 -0.4365 32 1 3.0097 -0.8423 -0.5876 33 1 1.6837 3.2273 0.5099 34 1 2.4878 0.1472 4.0172 35 1 1.7652 -1.4741 4.1497 36 1 3.0105 -0.9570 5.3117 37 1 4.7215 -3.3500 2.9838 38 1 3.0695 -3.4733 3.6352 39 1 7.3973 -3.8681 4.1494 40 1 6.7704 -2.2889 3.6193 41 1 7.9097 -2.3816 4.9835 42 1 5.1230 -2.9121 9.2888 43 1 3.3963 -2.9328 8.8572 44 1 4.7111 -4.5967 11.0149 45 1 2.9846 -4.6175 10.5827 46 1 3.6639 -6.7561 11.6380 47 1 3.1738 -7.0068 9.9456 48 1 4.9003 -6.9852 10.3780 49 1 1.9461 -2.2331 6.4489 50 1 1.9425 -3.6811 5.4138 51 1 2.0647 -3.8509 7.1815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868041174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:03 Heat of formation + Delta-G solvation = 54.863785 kcal Electronic energy + Delta-G solvation = -31304.018426 eV Core-core repulsion = 27207.550718 eV Total energy + Delta-G solvation = -4096.467708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.31347 -38.86812 -38.33068 -35.34382 -34.41879 -33.70828 -31.96866 -31.74747 -31.39908 -30.56877 -28.75235 -28.08411 -26.42371 -25.50514 -24.90086 -24.18804 -23.22354 -21.88430 -19.48266 -19.34032 -18.75481 -17.68969 -17.38963 -16.66574 -16.47395 -16.36509 -16.05352 -15.02480 -14.51595 -14.33588 -14.20239 -14.13455 -13.87400 -13.75720 -13.26482 -13.24454 -13.04000 -12.95417 -12.79326 -12.50806 -12.28398 -12.16112 -12.03779 -11.91927 -11.77596 -11.72152 -11.69670 -11.58810 -11.40568 -11.04805 -11.03506 -10.57307 -10.47774 -10.35683 -10.26734 -10.11723 -9.98078 -9.31032 -9.21710 -8.98762 -8.70272 -8.32793 -7.97838 -7.93334 -6.41248 -3.85740 1.82182 2.35224 2.95083 3.10543 3.21271 3.23490 3.58346 3.75781 4.01235 4.16436 4.29769 4.35769 4.62036 4.63858 4.72675 4.82171 4.92334 4.94538 5.00286 5.05793 5.18903 5.27145 5.47157 5.49673 5.56042 5.62707 5.69160 5.72646 5.77515 5.79206 5.85188 5.92280 6.00665 6.08684 6.14533 6.30668 6.38679 6.48900 6.55899 6.61450 6.72046 6.77746 6.86156 6.91855 7.00165 7.10376 7.19379 7.21393 7.42334 7.66223 7.90790 8.32546 9.00590 9.05654 9.49057 9.90440 10.58466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.002696 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.387247 B =10383.767377 C =10770.690525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.098 4.098 3 C 0.238 3.762 4 N -0.437 5.437 5 C -0.346 4.346 6 H 0.106 0.894 7 C 0.041 3.959 8 N -0.842 5.842 9 Si 0.906 3.094 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.607 6.607 15 C -0.080 4.080 16 H 0.082 0.918 17 C -0.144 4.144 18 C -0.019 4.019 19 C -0.213 4.213 20 C 0.089 3.911 21 C -0.075 4.075 22 N -0.297 5.297 23 N -0.377 5.377 24 C 0.315 3.685 25 O -0.404 6.404 26 C 0.066 3.934 27 C -0.151 4.151 28 C 0.095 3.905 29 C -0.095 4.095 30 H 0.196 0.804 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.270 0.730 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.089 0.911 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -8.561 15.067 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 C -0.099 4.099 3 C 0.115 3.885 4 N -0.154 5.154 5 C -0.472 4.472 6 H 0.124 0.876 7 C -0.166 4.166 8 N -0.477 5.477 9 Si 0.732 3.268 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.252 3.748 14 O -0.494 6.494 15 C -0.101 4.101 16 H 0.100 0.900 17 C -0.202 4.202 18 C -0.057 4.057 19 C -0.223 4.223 20 C -0.079 4.079 21 C -0.133 4.133 22 N -0.118 5.118 23 N -0.164 5.164 24 C 0.154 3.846 25 O -0.323 6.323 26 C -0.011 4.011 27 C -0.209 4.209 28 C -0.029 4.029 29 C -0.154 4.154 30 H 0.214 0.786 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.249 -9.096 15.657 18.397 hybrid contribution -0.532 1.349 -0.002 1.450 sum 2.716 -7.747 15.655 17.677 Atomic orbital electron populations 1.24158 0.95289 1.07220 1.02681 1.23155 0.94333 0.94643 0.97783 1.18074 0.84193 1.01288 0.84939 1.43720 1.55810 1.05132 1.10779 1.19565 1.37943 0.83459 1.06251 0.87605 1.25177 0.94941 0.99123 0.97361 1.70204 1.19074 1.25572 1.32861 0.86333 0.80497 0.81012 0.78933 1.19794 1.21086 1.19900 1.20153 0.82970 0.82914 0.88770 1.90527 1.58577 1.36697 1.63587 1.20891 0.99944 0.96051 0.93222 0.90019 1.21917 0.97226 1.03501 0.97514 1.19703 1.00705 0.95711 0.89622 1.19890 0.91953 1.14624 0.95853 1.22287 0.95431 0.98354 0.91792 1.20215 0.93698 1.02841 0.96567 1.77268 0.98527 1.25693 1.10283 1.48114 1.04080 1.58837 1.05330 1.22019 1.00203 0.83626 0.78731 1.87912 1.91339 1.24520 1.28508 1.22420 0.99234 0.97824 0.81647 1.21744 1.03372 0.93849 1.01886 1.20802 0.93605 1.01080 0.87441 1.20601 0.87725 1.03237 1.03789 0.78641 0.88118 0.91236 0.91960 0.89769 0.93541 0.93485 0.90889 0.91328 0.90590 0.89827 0.91124 0.89946 0.89973 0.92926 0.92915 0.90784 0.91684 0.91705 0.89796 0.89196 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.21 19.25 29.55 0.57 -5.64 16 2 C -0.10 -2.39 11.54 -37.12 -0.43 -2.82 16 3 C 0.24 5.73 5.16 -6.83 -0.04 5.69 16 4 N -0.44 -10.65 2.59 -117.93 -0.31 -10.95 16 5 C -0.35 -8.31 7.61 -14.93 -0.11 -8.43 16 6 H 0.11 2.43 5.54 -52.49 -0.29 2.14 16 7 C 0.04 0.99 4.77 -17.47 -0.08 0.90 16 8 N -0.84 -21.22 9.51 55.50 0.53 -20.69 16 9 Si 0.91 18.84 29.64 -169.99 -5.04 13.80 16 10 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 11 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.46 10.83 6.97 -10.98 -0.08 10.75 16 14 O -0.61 -15.57 15.55 5.55 0.09 -15.48 16 15 C -0.08 -1.54 1.88 -91.76 -0.17 -1.71 16 16 H 0.08 1.57 7.43 -51.93 -0.39 1.19 16 17 C -0.14 -2.63 7.43 37.16 0.28 -2.36 16 18 C -0.02 -0.33 3.95 -27.88 -0.11 -0.44 16 19 C -0.21 -3.46 4.82 -105.05 -0.51 -3.97 16 20 C 0.09 1.42 7.22 -82.40 -0.59 0.83 16 21 C -0.07 -0.98 10.12 36.01 0.36 -0.62 16 22 N -0.30 -4.93 12.58 33.67 0.42 -4.50 16 23 N -0.38 -5.58 3.88 -61.90 -0.24 -5.82 16 24 C 0.31 3.47 6.87 59.85 0.41 3.88 16 25 O -0.40 -4.68 10.57 -35.23 -0.37 -5.05 16 26 C 0.07 0.49 6.66 37.15 0.25 0.74 16 27 C -0.15 -1.01 10.28 37.15 0.38 -0.62 16 28 C 0.09 1.41 6.00 -82.27 -0.49 0.92 16 29 C -0.10 -1.14 8.55 36.00 0.31 -0.83 16 30 H 0.20 3.62 7.80 -54.09 -0.42 3.20 16 31 H 0.10 2.44 6.41 -51.93 -0.33 2.11 16 32 H 0.07 1.62 7.44 -51.93 -0.39 1.24 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.73 5.59 -51.93 -0.29 1.44 16 35 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.05 0.76 5.46 -51.93 -0.28 0.48 16 37 H 0.07 1.31 7.82 -51.93 -0.41 0.91 16 38 H 0.07 1.24 7.14 -51.93 -0.37 0.86 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.69 7.66 -51.93 -0.40 0.29 16 44 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.94 6.83 -51.93 -0.35 0.59 16 50 H 0.09 1.11 7.14 -51.93 -0.37 0.74 16 51 H 0.06 0.66 7.72 -51.93 -0.40 0.26 16 LS Contribution 414.16 15.07 6.24 6.24 Total: -1.00 -31.70 414.16 -6.77 -38.48 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.04 Total: 7.72 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -0.06 Total: -3.73 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.41 Total: -41.97 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.29 Total: -20.54 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.04 Total: 13.80 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.70 -6.77 -38.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.340 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds