Wall clock time and date at job start Wed Apr 1 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47159 * 274.86742 * 3 2 1 5 5 C 1.37091 * 120.00154 * 268.28608 * 4 3 2 6 6 H 1.07994 * 120.00098 * 190.11328 * 5 4 3 7 7 C 1.38957 * 119.99662 * 10.10875 * 5 4 3 8 8 N 1.31412 * 120.00323 * 28.49095 * 7 5 4 9 9 Si 1.86798 * 119.99828 * 208.48425 * 7 5 4 10 10 H 1.48503 * 109.47017 * 60.00557 * 9 7 5 11 11 H 1.48503 * 109.47234 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47561 * 300.00889 * 9 7 5 13 13 C 1.34774 * 119.99580 * 88.28676 * 4 3 2 14 14 O 1.21294 * 120.00547 * 2.80781 * 13 4 3 15 15 C 1.50707 * 119.99437 * 182.80288 * 13 4 3 16 16 H 1.08991 * 109.47270 * 304.14238 * 15 13 4 17 17 C 1.53005 * 109.46790 * 64.14756 * 15 13 4 18 18 C 1.53007 * 109.46727 * 184.14020 * 15 13 4 19 19 C 1.50705 * 109.46604 * 175.00554 * 18 15 13 20 20 C 1.39866 * 126.03573 * 270.15209 * 19 18 15 21 21 C 1.50703 * 125.90285 * 0.02562 * 20 19 18 22 22 N 1.30841 * 108.20290 * 180.24063 * 20 19 18 23 23 N 1.40087 * 108.20124 * 359.77695 * 22 20 19 24 24 C 1.46500 * 126.03553 * 180.02562 * 23 22 20 25 25 O 1.42897 * 109.46763 * 269.97424 * 24 23 22 26 26 C 1.42906 * 114.00046 * 180.02562 * 25 24 23 27 27 C 1.52993 * 109.47238 * 180.02562 * 26 25 24 28 28 C 1.34948 * 107.92796 * 0.02562 * 23 22 20 29 29 C 1.50692 * 126.12959 * 179.97438 * 28 23 22 30 30 H 4.40642 * 5.51418 * 179.97438 * 4 1 2 31 31 H 1.09000 * 109.46922 * 154.86299 * 3 2 1 32 32 H 1.08998 * 109.46710 * 34.87199 * 3 2 1 33 33 H 0.96992 * 120.00354 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.46576 * 301.51444 * 17 15 13 35 35 H 1.08996 * 109.47539 * 61.51532 * 17 15 13 36 36 H 1.09000 * 109.46860 * 181.52009 * 17 15 13 37 37 H 1.08995 * 109.47007 * 55.00723 * 18 15 13 38 38 H 1.09003 * 109.47198 * 294.99994 * 18 15 13 39 39 H 1.08996 * 109.47676 * 270.24025 * 21 20 19 40 40 H 1.08998 * 109.47006 * 30.23999 * 21 20 19 41 41 H 1.08997 * 109.46965 * 150.23442 * 21 20 19 42 42 H 1.08999 * 109.47117 * 29.97555 * 24 23 22 43 43 H 1.08998 * 109.46837 * 149.97575 * 24 23 22 44 44 H 1.09001 * 109.46623 * 299.99948 * 26 25 24 45 45 H 1.08997 * 109.46754 * 59.99337 * 26 25 24 46 46 H 1.08997 * 109.47149 * 180.02562 * 27 26 25 47 47 H 1.09001 * 109.47157 * 299.99481 * 27 26 25 48 48 H 1.08997 * 109.47903 * 59.99901 * 27 26 25 49 49 H 1.09000 * 109.47365 * 90.02682 * 29 28 23 50 50 H 1.09000 * 109.47289 * 210.02710 * 29 28 23 51 51 H 1.09005 * 109.47363 * 330.02701 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1163 1.3762 5 6 3.3959 1.0124 2.1091 6 1 3.9067 0.9342 3.0574 7 6 3.0038 2.2570 1.6316 8 7 1.9576 2.3585 0.8428 9 14 3.9636 3.7861 2.1113 10 1 5.3694 3.6524 1.6519 11 1 3.3460 4.9778 1.4758 12 1 3.9382 3.9438 3.5876 13 6 3.3267 -1.3336 1.9218 14 8 3.1442 -2.3318 1.2573 15 6 3.7685 -1.4545 3.3576 16 1 4.6907 -0.8920 3.5025 17 6 2.6797 -0.8944 4.2750 18 6 4.0111 -2.9273 3.6942 19 6 4.5695 -3.0382 5.0895 20 6 5.9239 -3.0174 5.4378 21 6 7.0803 -2.8795 4.4814 22 7 6.0138 -3.1430 6.7371 23 7 4.7171 -3.2427 7.2578 24 6 4.3656 -3.3955 8.6718 25 8 4.3006 -4.7850 8.9989 26 6 3.9623 -5.0460 10.3626 27 6 3.9224 -6.5571 10.5980 28 6 3.8490 -3.1731 6.2270 29 6 2.3467 -3.2391 6.3245 30 1 -1.0499 0.0002 0.0001 31 1 3.0089 0.9312 -0.4365 32 1 3.0097 -0.8423 -0.5876 33 1 1.6837 3.2273 0.5099 34 1 2.4878 0.1472 4.0172 35 1 1.7652 -1.4741 4.1497 36 1 3.0105 -0.9570 5.3117 37 1 4.7215 -3.3500 2.9838 38 1 3.0695 -3.4733 3.6352 39 1 7.3973 -3.8681 4.1494 40 1 6.7704 -2.2889 3.6193 41 1 7.9097 -2.3816 4.9835 42 1 5.1230 -2.9121 9.2888 43 1 3.3963 -2.9328 8.8572 44 1 4.7111 -4.5967 11.0149 45 1 2.9846 -4.6175 10.5827 46 1 3.6639 -6.7561 11.6380 47 1 3.1738 -7.0068 9.9456 48 1 4.9003 -6.9852 10.3780 49 1 1.9461 -2.2331 6.4489 50 1 1.9425 -3.6811 5.4138 51 1 2.0647 -3.8509 7.1815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868041174.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:02 Heat of formation + Delta-G solvation = 36.827508 kcal Electronic energy + Delta-G solvation = -31304.800538 eV Core-core repulsion = 27207.550718 eV Total energy + Delta-G solvation = -4097.249819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.45765 -40.65320 -39.11036 -37.11619 -35.96715 -34.76856 -33.73734 -33.28173 -32.47805 -31.75440 -29.73939 -29.32852 -28.19422 -26.76018 -26.62479 -25.35270 -23.77615 -23.40289 -20.88285 -20.51097 -20.30420 -19.43345 -18.27231 -18.13727 -17.96408 -17.56713 -17.01035 -16.37658 -16.20167 -15.96502 -15.87279 -15.31492 -14.97743 -14.89922 -14.55439 -14.34401 -14.26524 -13.95912 -13.90922 -13.79334 -13.64390 -13.45262 -13.40138 -13.14052 -13.08344 -13.03802 -12.74077 -12.73818 -12.56663 -12.38619 -12.29033 -12.18627 -12.12508 -11.86777 -11.75593 -11.34246 -11.16172 -11.05679 -10.77879 -10.56463 -10.13830 -10.09703 -9.82878 -9.22762 -8.25519 -5.75215 0.73913 1.38390 1.43957 1.52880 1.59429 1.73520 1.94790 2.21456 2.37517 2.45141 2.83330 3.11544 3.25553 3.48228 3.72255 3.91225 3.96202 4.00156 4.11436 4.14223 4.22552 4.26845 4.29144 4.33339 4.44670 4.50450 4.61319 4.66282 4.66863 4.76778 4.79002 4.81291 4.88892 4.95483 4.97629 5.00010 5.04946 5.08777 5.16806 5.18673 5.22635 5.36491 5.42181 5.43657 5.52572 5.61289 5.74808 5.81917 5.89704 6.24630 6.44981 6.75554 7.16804 7.19073 7.63534 8.04888 8.74203 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014022 B = 0.002696 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.387247 B =10383.767377 C =10770.690525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.144 4.144 3 C 0.239 3.761 4 N -0.446 5.446 5 C -0.356 4.356 6 H 0.114 0.886 7 C 0.005 3.995 8 N -0.866 5.866 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.452 3.548 14 O -0.636 6.636 15 C -0.070 4.070 16 H 0.082 0.918 17 C -0.130 4.130 18 C -0.002 4.002 19 C -0.239 4.239 20 C 0.079 3.921 21 C -0.074 4.074 22 N -0.322 5.322 23 N -0.379 5.379 24 C 0.306 3.694 25 O -0.431 6.431 26 C 0.059 3.941 27 C -0.151 4.151 28 C 0.101 3.899 29 C -0.094 4.094 30 H 0.234 0.766 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.269 0.731 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.113 0.887 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.056 0.944 48 H 0.051 0.949 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -8.143 17.464 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.146 4.146 3 C 0.116 3.884 4 N -0.162 5.162 5 C -0.483 4.483 6 H 0.132 0.868 7 C -0.200 4.200 8 N -0.502 5.502 9 Si 0.795 3.205 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.192 1.192 13 C 0.242 3.758 14 O -0.525 6.525 15 C -0.091 4.091 16 H 0.101 0.899 17 C -0.187 4.187 18 C -0.041 4.041 19 C -0.249 4.249 20 C -0.088 4.088 21 C -0.132 4.132 22 N -0.144 5.144 23 N -0.165 5.165 24 C 0.147 3.853 25 O -0.351 6.351 26 C -0.018 4.018 27 C -0.208 4.208 28 C -0.024 4.024 29 C -0.152 4.152 30 H 0.250 0.750 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.113 0.887 50 H 0.103 0.897 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.739 -8.679 18.085 20.246 hybrid contribution -0.448 1.152 -0.704 1.422 sum 2.291 -7.527 17.381 19.079 Atomic orbital electron populations 1.25073 0.96298 1.05320 1.00831 1.23492 0.95099 0.96425 0.99582 1.17975 0.84678 1.00585 0.85168 1.43941 1.55724 1.05689 1.10880 1.19834 1.38091 0.83594 1.06735 0.86823 1.25898 0.95278 1.01415 0.97404 1.70305 1.20089 1.25967 1.33880 0.85337 0.78930 0.77444 0.78775 1.19608 1.21406 1.19177 1.20886 0.82445 0.82241 0.90179 1.90493 1.59826 1.37493 1.64677 1.20855 1.00079 0.97524 0.90687 0.89944 1.21778 0.96813 1.01720 0.98424 1.19440 1.00035 0.94061 0.90543 1.19797 0.92501 1.17157 0.95463 1.22643 0.96044 0.98040 0.92096 1.20270 0.93354 1.03560 0.96029 1.77206 0.99991 1.26703 1.10493 1.48448 1.03409 1.57969 1.06693 1.22418 1.02066 0.83922 0.76892 1.87875 1.91799 1.24625 1.30801 1.22695 1.00743 0.98315 0.79998 1.21782 1.02370 0.93456 1.03209 1.21189 0.94843 0.99217 0.87168 1.20687 0.85675 1.04315 1.04560 0.74974 0.88962 0.91628 0.92131 0.92006 0.93590 0.91165 0.92036 0.92119 0.89498 0.90290 0.90023 0.88972 0.86974 0.91685 0.90796 0.88366 0.92520 0.93024 0.88662 0.89722 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.38 19.25 74.32 1.43 -9.95 16 2 C -0.14 -7.15 11.54 31.13 0.36 -6.79 16 3 C 0.24 11.84 5.16 84.57 0.44 12.27 16 4 N -0.45 -22.08 2.59 -645.41 -1.67 -23.75 16 5 C -0.36 -17.17 7.61 84.04 0.64 -16.53 16 6 H 0.11 5.19 5.54 -2.91 -0.02 5.18 16 7 C 0.00 0.22 4.77 84.93 0.40 0.63 16 8 N -0.87 -43.78 9.51 21.67 0.21 -43.57 16 9 Si 0.97 38.29 29.64 68.60 2.03 40.32 16 10 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 11 H -0.29 -11.44 7.11 99.48 0.71 -10.74 16 12 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 13 C 0.45 21.54 6.97 87.66 0.61 22.15 16 14 O -0.64 -33.47 15.55 -3.07 -0.05 -33.52 16 15 C -0.07 -2.72 1.88 -11.53 -0.02 -2.74 16 16 H 0.08 3.18 7.43 -2.39 -0.02 3.16 16 17 C -0.13 -4.64 7.43 71.98 0.53 -4.10 16 18 C 0.00 -0.06 3.95 29.85 0.12 0.05 16 19 C -0.24 -7.62 4.82 -20.14 -0.10 -7.71 16 20 C 0.08 2.48 7.22 43.10 0.31 2.79 16 21 C -0.07 -1.91 10.12 71.24 0.72 -1.19 16 22 N -0.32 -10.40 12.58 -47.38 -0.60 -11.00 16 23 N -0.38 -10.58 3.88 -450.23 -1.75 -12.32 16 24 C 0.31 5.98 6.87 127.77 0.88 6.86 16 25 O -0.43 -9.13 10.57 -148.98 -1.57 -10.71 16 26 C 0.06 0.72 6.66 71.98 0.48 1.20 16 27 C -0.15 -1.74 10.28 71.98 0.74 -1.00 16 28 C 0.10 2.85 6.00 41.40 0.25 3.10 16 29 C -0.09 -2.04 8.55 71.23 0.61 -1.43 16 30 H 0.23 8.03 7.80 -4.42 -0.03 8.00 16 31 H 0.09 4.63 6.41 -2.39 -0.02 4.62 16 32 H 0.07 3.20 7.44 -2.39 -0.02 3.18 16 33 H 0.27 13.07 8.31 -92.71 -0.77 12.30 16 34 H 0.06 2.50 5.59 -2.39 -0.01 2.49 16 35 H 0.04 1.62 8.07 -2.39 -0.02 1.60 16 36 H 0.07 2.15 5.46 -2.39 -0.01 2.14 16 37 H 0.06 2.27 7.82 -2.39 -0.02 2.25 16 38 H 0.06 2.20 7.14 -2.39 -0.02 2.18 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.08 2.09 7.94 -2.39 -0.02 2.07 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.11 1.47 7.66 -2.39 -0.02 1.45 16 44 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.09 1.86 6.83 -2.39 -0.02 1.85 16 50 H 0.08 1.95 7.14 -2.39 -0.02 1.94 16 51 H 0.09 1.49 7.72 -2.38 -0.02 1.47 16 Total: -1.00 -68.39 414.16 5.93 -62.46 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.92 Total: 34.48 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 8.40 Total: -2.39 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.81 Total: -90.65 kcal Atomic # 8 Polarization: -42.60 SS G_CDS: -1.62 Total: -44.22 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -68.39 5.93 -62.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868041174.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.290 kcal (2) G-P(sol) polarization free energy of solvation -68.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds