Wall clock time and date at job start Wed Apr 1 2020 05:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46852 * 110.99777 * 2 1 4 4 C 1.53036 * 109.52165 * 185.83989 * 3 2 1 5 5 C 1.53122 * 109.27875 * 300.81802 * 4 3 2 6 6 O 1.42907 * 109.52100 * 297.68746 * 5 4 3 7 7 C 1.52995 * 109.52335 * 177.56371 * 5 4 3 8 8 N 1.46501 * 109.46917 * 185.12528 * 7 5 4 9 9 C 1.34776 * 119.99926 * 180.27159 * 8 7 5 10 10 O 1.21591 * 119.99937 * 359.72610 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72408 * 9 8 7 12 12 C 1.39946 * 120.00246 * 175.37992 * 11 9 8 13 13 C 1.38862 * 120.07206 * 214.81634 * 12 11 9 14 14 C 1.38113 * 119.93034 * 179.76679 * 13 12 11 15 15 C 1.38284 * 120.06849 * 0.50598 * 14 13 12 16 16 C 1.50703 * 119.92720 * 179.72085 * 15 14 13 17 17 C 1.50694 * 109.47245 * 270.02116 * 16 15 14 18 18 H 1.08006 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00038 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47017 * 89.99833 * 21 19 17 23 23 H 1.48499 * 109.47049 * 210.00386 * 21 19 17 24 24 H 1.48503 * 109.47051 * 329.99839 * 21 19 17 25 25 C 1.38275 * 120.14130 * 359.74704 * 15 14 13 26 26 C 1.38121 * 120.06968 * 359.97438 * 25 15 14 27 27 C 1.53116 * 109.21000 * 57.62273 * 5 4 3 28 28 C 1.46847 * 110.99816 * 124.20622 * 2 1 3 29 29 H 1.08997 * 109.46993 * 60.00125 * 1 2 3 30 30 H 1.09001 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47413 * 300.00347 * 1 2 3 32 32 H 1.09000 * 109.46588 * 65.82030 * 3 2 1 33 33 H 1.09006 * 109.44878 * 305.84791 * 3 2 1 34 34 H 1.08999 * 109.50322 * 180.87699 * 4 3 2 35 35 H 1.09001 * 109.50839 * 60.75931 * 4 3 2 36 36 H 0.96695 * 113.99740 * 179.86597 * 6 5 4 37 37 H 1.08996 * 109.47514 * 65.12272 * 7 5 4 38 38 H 1.09006 * 109.46760 * 305.12418 * 7 5 4 39 39 H 0.96996 * 120.00098 * 359.97438 * 8 7 5 40 40 H 0.96995 * 120.00043 * 355.38323 * 11 9 8 41 41 H 1.07997 * 120.03860 * 359.97438 * 13 12 11 42 42 H 1.08003 * 119.96602 * 180.25399 * 14 13 12 43 43 H 1.08992 * 109.47400 * 30.02691 * 16 15 14 44 44 H 1.09002 * 109.46612 * 150.02578 * 16 15 14 45 45 H 0.97007 * 119.99838 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.96967 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.03604 * 179.97438 * 26 25 15 48 48 H 1.08998 * 109.50334 * 62.32321 * 27 5 4 49 49 H 1.09009 * 109.50142 * 182.43929 * 27 5 4 50 50 H 1.09000 * 109.46219 * 294.17544 * 28 2 1 51 51 H 1.08993 * 109.46463 * 54.15970 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1915 2.2488 7 6 5.6361 0.4452 0.8406 8 7 6.1955 -0.4190 1.8829 9 6 7.5236 -0.6431 1.9315 10 8 8.2569 -0.1321 1.1072 11 7 8.0389 -1.4337 2.8937 12 6 9.4033 -1.7448 2.8876 13 6 9.8341 -2.9939 3.3146 14 6 11.1810 -3.2994 3.3028 15 6 12.1010 -2.3593 2.8762 16 6 13.5704 -2.6940 2.8706 17 6 14.1766 -2.3170 4.1978 18 1 13.5594 -1.8792 4.9685 19 6 15.5190 -2.5308 4.4282 20 7 16.2706 -3.0634 3.4896 21 14 16.2703 -2.0642 6.0737 22 1 16.1809 -3.2184 7.0038 23 1 17.6952 -1.6936 5.8799 24 1 15.5319 -0.9094 6.6452 25 6 11.6757 -1.1128 2.4553 26 6 10.3297 -0.8030 2.4593 27 6 3.5183 -0.8714 1.0225 28 6 1.9952 -0.7707 1.1338 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7324 1.8610 0.9375 33 1 1.5633 1.9255 -0.8332 34 1 3.9098 2.3513 -0.1311 35 1 3.7814 0.8568 -1.0906 36 1 4.1674 0.7391 3.0289 37 1 6.0721 1.4408 0.9214 38 1 5.8647 0.0269 -0.1397 39 1 5.6105 -0.8265 2.5407 40 1 7.4640 -1.7871 3.5904 41 1 9.1166 -3.7269 3.6524 42 1 11.5164 -4.2722 3.6310 43 1 13.6989 -3.7632 2.7031 44 1 14.0663 -2.1392 2.0741 45 1 17.2152 -3.2135 3.6516 46 1 12.3967 -0.3805 2.1231 47 1 9.9981 0.1709 2.1309 48 1 3.7816 -1.3845 0.0976 49 1 3.9102 -1.4292 1.8731 50 1 1.7324 -0.2707 2.0660 51 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932577808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:52 Heat of formation + Delta-G solvation = -52.043160 kcal Electronic energy + Delta-G solvation = -29775.985880 eV Core-core repulsion = 25674.882339 eV Total energy + Delta-G solvation = -4101.103541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87759 -40.02717 -38.32747 -37.02789 -34.93586 -34.53959 -33.03855 -32.58541 -31.44997 -30.45361 -30.23324 -28.39065 -26.52739 -25.20305 -23.94755 -23.22769 -22.35671 -22.13441 -21.11424 -20.34314 -20.19749 -18.74057 -17.52227 -16.94573 -16.28592 -16.20920 -15.85683 -15.75772 -15.55263 -15.21914 -14.95879 -14.73939 -14.59599 -14.20913 -14.02031 -13.92765 -13.71055 -13.04100 -13.00852 -12.94336 -12.77458 -12.65147 -12.52440 -12.11182 -11.96870 -11.89966 -11.75726 -11.61697 -11.37237 -11.25583 -10.90688 -10.82559 -10.61803 -10.38648 -10.34845 -10.15329 -9.86242 -9.44865 -9.38945 -9.22408 -8.81036 -8.39989 -8.24681 -7.34746 -6.01247 -4.05232 1.96722 2.10826 2.46225 3.13106 3.31781 3.38077 3.39416 3.42434 3.66665 3.97377 4.05957 4.16382 4.25718 4.40790 4.59760 4.60948 4.77369 4.82746 4.95761 4.97732 5.10135 5.10323 5.25257 5.30144 5.32719 5.35118 5.39076 5.44688 5.49964 5.53024 5.56555 5.62147 5.75044 5.95912 6.03928 6.08127 6.18485 6.23841 6.52077 6.54509 6.56660 6.70175 6.96606 7.02357 7.06917 7.20529 7.25669 7.54976 7.75443 7.81871 7.90552 7.94585 8.35429 8.46219 9.00138 9.58381 11.08296 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.001583 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.559792 B =17680.687402 C =17772.601833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.100 4.100 5 C 0.123 3.877 6 O -0.552 6.552 7 C 0.115 3.885 8 N -0.748 5.748 9 C 0.702 3.298 10 O -0.568 6.568 11 N -0.680 5.680 12 C 0.119 3.881 13 C -0.144 4.144 14 C -0.109 4.109 15 C -0.043 4.043 16 C 0.048 3.952 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.142 4.142 28 C 0.059 3.941 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.025 0.975 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.373 0.627 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.391 0.609 40 H 0.400 0.600 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.121 0.879 47 H 0.130 0.870 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.040 0.960 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.445 5.261 -4.537 34.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.138 4.138 5 C 0.082 3.918 6 O -0.358 6.358 7 C -0.010 4.010 8 N -0.406 5.406 9 C 0.403 3.597 10 O -0.444 6.444 11 N -0.327 5.327 12 C 0.026 3.974 13 C -0.165 4.165 14 C -0.127 4.127 15 C -0.044 4.044 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.127 4.127 26 C -0.136 4.136 27 C -0.180 4.180 28 C -0.069 4.069 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.221 0.779 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.225 0.775 40 H 0.234 0.766 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.058 0.942 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -32.773 5.901 -6.216 33.875 hybrid contribution -0.087 -0.262 2.724 2.738 sum -32.860 5.639 -3.491 33.523 Atomic orbital electron populations 1.22340 0.87106 1.02097 1.00738 1.61957 1.07737 1.13987 1.43260 1.22013 0.94651 0.89080 1.01165 1.21538 0.94969 1.00897 0.96424 1.21530 0.91840 0.92361 0.86039 1.86591 1.79959 1.53866 1.15363 1.21921 0.92339 0.95194 0.91558 1.45074 1.06127 1.54494 1.34855 1.15894 0.81994 0.79998 0.81850 1.90962 1.58149 1.53508 1.41770 1.42419 1.08667 1.52716 1.28942 1.17290 0.80920 0.94114 1.05066 1.20709 0.96480 0.94153 1.05160 1.20860 0.91484 0.99978 1.00423 1.20714 0.98510 0.92582 0.92586 1.18348 0.85146 0.97650 0.97775 1.21078 0.93711 1.41197 0.98946 0.92460 1.25011 0.97184 0.95224 0.96913 1.69960 1.06409 1.43944 1.32999 0.86546 0.78386 0.78858 0.83961 1.20634 1.21182 1.19833 1.21020 0.94436 0.97028 1.00261 1.21152 0.92350 0.99094 1.01012 1.22269 0.95516 0.96630 1.03612 1.21999 0.94645 0.98233 0.92018 0.91255 0.91365 0.95652 0.93778 0.90563 0.90132 0.89287 0.77931 0.90432 0.90368 0.77505 0.76571 0.86934 0.86044 0.95338 0.95289 0.92877 0.86127 0.85271 0.89566 0.91235 0.94166 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.59 60.06 0.58 0.71 16 2 N -0.54 -3.50 4.91 -242.95 -1.19 -4.70 16 3 C 0.06 0.37 5.33 -3.83 -0.02 0.35 16 4 C -0.10 -0.62 5.11 -26.65 -0.14 -0.76 16 5 C 0.12 0.75 0.72 -90.50 -0.07 0.68 16 6 O -0.55 -3.58 11.85 -35.23 -0.42 -4.00 16 7 C 0.11 0.92 4.85 -4.04 -0.02 0.90 16 8 N -0.75 -6.04 5.05 -65.23 -0.33 -6.37 16 9 C 0.70 9.10 8.41 -86.92 -0.73 8.37 16 10 O -0.57 -9.98 13.78 5.29 0.07 -9.91 16 11 N -0.68 -8.31 5.34 -14.22 -0.08 -8.38 16 12 C 0.12 1.96 6.30 -83.69 -0.53 1.43 16 13 C -0.14 -2.35 9.97 -39.40 -0.39 -2.74 16 14 C -0.11 -2.11 9.69 -39.61 -0.38 -2.49 16 15 C -0.04 -0.96 5.07 -104.59 -0.53 -1.49 16 16 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 17 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.11 -2.26 9.69 -39.61 -0.38 -2.65 16 26 C -0.12 -2.19 8.70 -39.39 -0.34 -2.53 16 27 C -0.14 -0.75 4.81 -26.65 -0.13 -0.88 16 28 C 0.06 0.34 5.33 -3.83 -0.02 0.32 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.04 0.33 7.76 -51.93 -0.40 -0.08 16 33 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.37 1.44 8.19 45.56 0.37 1.81 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 1.85 6.42 -40.82 -0.26 1.59 16 40 H 0.40 3.29 8.84 -40.82 -0.36 2.93 16 41 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.12 2.25 8.06 -52.48 -0.42 1.82 16 43 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.12 2.47 8.06 -52.48 -0.42 2.04 16 47 H 0.13 2.46 6.22 -52.49 -0.33 2.14 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.27 6.67 -51.92 -0.35 -0.08 16 50 H 0.04 0.25 7.76 -51.93 -0.40 -0.15 16 51 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 LS Contribution 407.84 15.07 6.15 6.15 Total: -1.00 -34.45 407.84 -11.34 -45.79 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -7.60 Total: 3.51 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.66 Total: -12.87 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.86 Total: -45.28 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.34 Total: -13.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.45 -11.34 -45.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932577808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.252 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds