Wall clock time and date at job start Wed Apr 1 2020 05:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46852 * 110.99777 * 2 1 4 4 C 1.53036 * 109.52165 * 185.83989 * 3 2 1 5 5 C 1.53122 * 109.27875 * 300.81802 * 4 3 2 6 6 O 1.42907 * 109.52100 * 297.68746 * 5 4 3 7 7 C 1.52995 * 109.52335 * 177.56371 * 5 4 3 8 8 N 1.46501 * 109.46917 * 185.12528 * 7 5 4 9 9 C 1.34776 * 119.99926 * 180.27159 * 8 7 5 10 10 O 1.21591 * 119.99937 * 359.72610 * 9 8 7 11 11 N 1.34773 * 120.00081 * 179.72408 * 9 8 7 12 12 C 1.39946 * 120.00246 * 175.37992 * 11 9 8 13 13 C 1.38862 * 120.07206 * 214.81634 * 12 11 9 14 14 C 1.38113 * 119.93034 * 179.76679 * 13 12 11 15 15 C 1.38284 * 120.06849 * 0.50598 * 14 13 12 16 16 C 1.50703 * 119.92720 * 179.72085 * 15 14 13 17 17 C 1.50694 * 109.47245 * 270.02116 * 16 15 14 18 18 H 1.08006 * 120.00096 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00038 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00012 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47017 * 89.99833 * 21 19 17 23 23 H 1.48499 * 109.47049 * 210.00386 * 21 19 17 24 24 H 1.48503 * 109.47051 * 329.99839 * 21 19 17 25 25 C 1.38275 * 120.14130 * 359.74704 * 15 14 13 26 26 C 1.38121 * 120.06968 * 359.97438 * 25 15 14 27 27 C 1.53116 * 109.21000 * 57.62273 * 5 4 3 28 28 C 1.46847 * 110.99816 * 124.20622 * 2 1 3 29 29 H 1.08997 * 109.46993 * 60.00125 * 1 2 3 30 30 H 1.09001 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47413 * 300.00347 * 1 2 3 32 32 H 1.09000 * 109.46588 * 65.82030 * 3 2 1 33 33 H 1.09006 * 109.44878 * 305.84791 * 3 2 1 34 34 H 1.08999 * 109.50322 * 180.87699 * 4 3 2 35 35 H 1.09001 * 109.50839 * 60.75931 * 4 3 2 36 36 H 0.96695 * 113.99740 * 179.86597 * 6 5 4 37 37 H 1.08996 * 109.47514 * 65.12272 * 7 5 4 38 38 H 1.09006 * 109.46760 * 305.12418 * 7 5 4 39 39 H 0.96996 * 120.00098 * 359.97438 * 8 7 5 40 40 H 0.96995 * 120.00043 * 355.38323 * 11 9 8 41 41 H 1.07997 * 120.03860 * 359.97438 * 13 12 11 42 42 H 1.08003 * 119.96602 * 180.25399 * 14 13 12 43 43 H 1.08992 * 109.47400 * 30.02691 * 16 15 14 44 44 H 1.09002 * 109.46612 * 150.02578 * 16 15 14 45 45 H 0.97007 * 119.99838 * 179.97438 * 20 19 17 46 46 H 1.08003 * 119.96967 * 179.97438 * 25 15 14 47 47 H 1.07996 * 120.03604 * 179.97438 * 26 25 15 48 48 H 1.08998 * 109.50334 * 62.32321 * 27 5 4 49 49 H 1.09009 * 109.50142 * 182.43929 * 27 5 4 50 50 H 1.09000 * 109.46219 * 294.17544 * 28 2 1 51 51 H 1.08993 * 109.46463 * 54.15970 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1915 2.2488 7 6 5.6361 0.4452 0.8406 8 7 6.1955 -0.4190 1.8829 9 6 7.5236 -0.6431 1.9315 10 8 8.2569 -0.1321 1.1072 11 7 8.0389 -1.4337 2.8937 12 6 9.4033 -1.7448 2.8876 13 6 9.8341 -2.9939 3.3146 14 6 11.1810 -3.2994 3.3028 15 6 12.1010 -2.3593 2.8762 16 6 13.5704 -2.6940 2.8706 17 6 14.1766 -2.3170 4.1978 18 1 13.5594 -1.8792 4.9685 19 6 15.5190 -2.5308 4.4282 20 7 16.2706 -3.0634 3.4896 21 14 16.2703 -2.0642 6.0737 22 1 16.1809 -3.2184 7.0038 23 1 17.6952 -1.6936 5.8799 24 1 15.5319 -0.9094 6.6452 25 6 11.6757 -1.1128 2.4553 26 6 10.3297 -0.8030 2.4593 27 6 3.5183 -0.8714 1.0225 28 6 1.9952 -0.7707 1.1338 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.7324 1.8610 0.9375 33 1 1.5633 1.9255 -0.8332 34 1 3.9098 2.3513 -0.1311 35 1 3.7814 0.8568 -1.0906 36 1 4.1674 0.7391 3.0289 37 1 6.0721 1.4408 0.9214 38 1 5.8647 0.0269 -0.1397 39 1 5.6105 -0.8265 2.5407 40 1 7.4640 -1.7871 3.5904 41 1 9.1166 -3.7269 3.6524 42 1 11.5164 -4.2722 3.6310 43 1 13.6989 -3.7632 2.7031 44 1 14.0663 -2.1392 2.0741 45 1 17.2152 -3.2135 3.6516 46 1 12.3967 -0.3805 2.1231 47 1 9.9981 0.1709 2.1309 48 1 3.7816 -1.3845 0.0976 49 1 3.9102 -1.4292 1.8731 50 1 1.7324 -0.2707 2.0660 51 1 1.5636 -1.7715 1.1242 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932577808.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:51 Heat of formation + Delta-G solvation = -77.774564 kcal Electronic energy + Delta-G solvation = -29777.101677 eV Core-core repulsion = 25674.882339 eV Total energy + Delta-G solvation = -4102.219338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.80258 -40.79506 -39.64798 -37.60777 -36.27867 -35.42648 -34.91800 -33.22852 -32.11162 -31.87855 -31.72844 -29.25204 -28.07408 -25.91196 -25.01989 -24.34450 -23.78916 -22.86973 -22.21608 -21.62452 -20.82331 -19.72566 -18.68251 -18.47525 -17.45462 -16.94770 -16.82662 -16.76889 -16.49344 -16.04551 -15.91411 -15.84322 -15.68694 -15.40970 -15.01182 -14.66825 -14.56060 -14.46665 -14.24419 -14.22912 -13.71691 -13.52968 -13.44001 -13.25950 -13.11941 -13.08412 -12.60344 -12.53282 -12.46391 -12.37045 -12.22101 -12.07929 -12.04644 -11.69416 -11.54162 -11.39926 -11.23241 -10.88486 -10.84543 -10.58793 -10.23690 -9.73315 -9.27110 -8.82603 -8.16707 -6.31697 0.50903 0.60599 1.40627 1.42182 1.50289 1.53578 2.04806 2.41437 2.96595 3.03358 3.11974 3.12387 3.23697 3.50188 3.67729 3.78248 4.08282 4.16968 4.19443 4.32403 4.36549 4.41422 4.45775 4.54757 4.58728 4.60970 4.66576 4.69299 4.70296 4.76245 4.80336 4.89375 4.95381 5.02983 5.06575 5.11878 5.15130 5.26942 5.31862 5.32880 5.35004 5.44443 5.52044 5.64796 5.77558 5.91502 6.10866 6.11406 6.13279 6.15118 6.28632 6.70910 6.81103 6.95550 7.36800 7.46512 8.91078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.035099 B = 0.001583 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.559792 B =17680.687402 C =17772.601833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.063 3.937 4 C -0.104 4.104 5 C 0.136 3.864 6 O -0.562 6.562 7 C 0.118 3.882 8 N -0.721 5.721 9 C 0.699 3.301 10 O -0.616 6.616 11 N -0.665 5.665 12 C 0.137 3.863 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.077 4.077 16 C 0.057 3.943 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.967 3.033 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.138 4.138 28 C 0.059 3.941 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.024 0.976 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.386 0.614 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.412 0.588 40 H 0.425 0.575 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.007 0.993 44 H -0.002 1.002 45 H 0.265 0.735 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.037 0.963 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.420 4.639 -2.694 36.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.065 4.065 4 C -0.142 4.142 5 C 0.095 3.905 6 O -0.369 6.369 7 C -0.007 4.007 8 N -0.379 5.379 9 C 0.400 3.600 10 O -0.495 6.495 11 N -0.314 5.314 12 C 0.042 3.958 13 C -0.146 4.146 14 C -0.132 4.132 15 C -0.077 4.077 16 C 0.020 3.980 17 C -0.566 4.566 18 H 0.074 0.926 19 C -0.194 4.194 20 N -0.571 5.571 21 Si 0.791 3.209 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.141 4.141 26 C -0.145 4.145 27 C -0.176 4.176 28 C -0.069 4.069 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.235 0.765 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.250 0.750 40 H 0.263 0.737 41 H 0.179 0.821 42 H 0.145 0.855 43 H 0.025 0.975 44 H 0.016 0.984 45 H 0.074 0.926 46 H 0.125 0.875 47 H 0.143 0.857 48 H 0.098 0.902 49 H 0.107 0.893 50 H 0.055 0.945 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -35.837 5.261 -4.328 36.478 hybrid contribution 0.684 -0.034 2.081 2.191 sum -35.153 5.227 -2.247 35.610 Atomic orbital electron populations 1.22373 0.86440 1.02608 1.00889 1.61996 1.08492 1.13898 1.43694 1.21963 0.94567 0.89227 1.00780 1.21570 0.95091 1.00891 0.96664 1.21370 0.90128 0.92990 0.86043 1.86590 1.80045 1.54429 1.15872 1.21918 0.93579 0.94101 0.91057 1.44794 1.04597 1.53575 1.34966 1.16087 0.83043 0.79574 0.81345 1.90950 1.59729 1.55263 1.43601 1.42174 1.07194 1.52471 1.29582 1.17328 0.82485 0.93448 1.02533 1.21010 0.95761 0.94641 1.03232 1.20968 0.92593 0.99529 1.00085 1.20404 0.96711 0.94306 0.96311 1.18088 0.88151 0.95619 0.96147 1.21405 0.94306 1.41202 0.99720 0.92587 1.25942 0.97642 0.94951 1.00894 1.70089 1.06816 1.44948 1.35233 0.85424 0.77411 0.78924 0.79152 1.19370 1.20643 1.19149 1.20920 0.95438 0.96531 1.01195 1.21138 0.91885 0.99754 1.01685 1.22251 0.95346 0.95891 1.04130 1.22024 0.94794 0.98455 0.91594 0.90853 0.90678 0.95782 0.94925 0.90033 0.90398 0.89178 0.76518 0.92073 0.91220 0.75021 0.73655 0.82133 0.85517 0.97456 0.98403 0.92615 0.87498 0.85671 0.90243 0.89261 0.94517 0.89955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.59 127.69 1.22 1.44 16 2 N -0.56 -6.22 4.91 -922.56 -4.53 -10.75 16 3 C 0.06 0.72 5.33 86.32 0.46 1.18 16 4 C -0.10 -1.18 5.11 30.65 0.16 -1.02 16 5 C 0.14 1.39 0.72 -10.72 -0.01 1.38 16 6 O -0.56 -6.00 11.85 -148.98 -1.77 -7.77 16 7 C 0.12 1.71 4.85 86.38 0.42 2.13 16 8 N -0.72 -9.60 5.05 -478.54 -2.42 -12.01 16 9 C 0.70 16.46 8.41 179.06 1.51 17.97 16 10 O -0.62 -21.19 13.78 -4.00 -0.06 -21.24 16 11 N -0.66 -13.88 5.34 -317.18 -1.69 -15.58 16 12 C 0.14 4.17 6.30 38.15 0.24 4.41 16 13 C -0.13 -3.69 9.97 22.39 0.22 -3.47 16 14 C -0.11 -4.28 9.69 22.25 0.22 -4.07 16 15 C -0.08 -3.51 5.07 -19.84 -0.10 -3.61 16 16 C 0.06 3.14 5.10 29.10 0.15 3.29 16 17 C -0.53 -30.73 9.09 25.60 0.23 -30.50 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.00 0.21 5.46 84.66 0.46 0.68 16 20 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 21 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 25 C -0.12 -5.28 9.69 22.25 0.22 -5.07 16 26 C -0.12 -4.68 8.70 22.39 0.19 -4.49 16 27 C -0.14 -1.09 4.81 30.65 0.15 -0.94 16 28 C 0.06 0.54 5.33 86.33 0.46 1.00 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.54 8.09 -2.39 -0.02 0.52 16 31 H 0.02 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.03 0.45 7.76 -2.39 -0.02 0.43 16 33 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.39 1.75 8.19 -74.06 -0.61 1.14 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.41 2.18 6.42 -92.71 -0.59 1.58 16 40 H 0.42 4.83 8.84 -92.71 -0.82 4.01 16 41 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 43 H 0.01 0.41 8.08 -2.39 -0.02 0.39 16 44 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 45 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 46 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 47 H 0.13 4.83 6.22 -2.91 -0.02 4.81 16 48 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 0.33 6.67 -2.38 -0.02 0.32 16 50 H 0.04 0.37 7.76 -2.39 -0.02 0.35 16 51 H 0.08 0.64 8.08 -2.39 -0.02 0.62 16 Total: -1.00 -77.83 407.84 -3.02 -80.85 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -1.07 Total: 16.10 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 6.20 Total: -19.70 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -8.36 Total: -94.98 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.82 Total: -29.01 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.83 -3.02 -80.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932577808.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.079 kcal (2) G-P(sol) polarization free energy of solvation -77.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds