Wall clock time and date at job start Wed Apr 1 2020 04:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46807 * 2 1 4 4 C 1.35678 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.68967 * 180.02562 * 4 3 2 6 6 C 1.38377 * 119.11548 * 179.97438 * 5 4 3 7 7 C 1.38827 * 118.48307 * 359.97438 * 6 5 4 8 8 C 1.38043 * 119.29338 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.58202 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47003 * 125.00325 * 9 8 7 11 11 O 1.21287 * 119.99825 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00082 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46523 * 35.00114 * 13 12 10 15 15 C 1.53043 * 109.46161 * 275.02579 * 13 12 10 16 16 C 1.53188 * 109.31020 * 301.34845 * 15 13 12 17 17 N 1.46925 * 108.77924 * 305.35892 * 16 15 13 18 18 C 1.36940 * 120.63396 * 233.59500 * 17 16 15 19 19 H 1.08000 * 119.99970 * 151.82575 * 18 17 16 20 20 C 1.38814 * 119.99455 * 331.82410 * 18 17 16 21 21 N 1.31614 * 120.00045 * 343.08722 * 20 18 17 22 22 Si 1.86799 * 119.99567 * 163.09261 * 20 18 17 23 23 H 1.48494 * 109.47464 * 59.99333 * 22 20 18 24 24 H 1.48500 * 109.47135 * 179.97438 * 22 20 18 25 25 H 1.48512 * 109.46916 * 299.99704 * 22 20 18 26 26 C 1.46923 * 118.73509 * 53.60626 * 17 16 15 27 27 C 1.53042 * 109.46382 * 154.97280 * 13 12 10 28 28 H 1.08994 * 109.50069 * 178.60272 * 27 13 12 29 29 C 1.52999 * 109.49813 * 298.70738 * 27 13 12 30 30 N 1.31970 * 120.83244 * 0.02562 * 8 7 6 31 31 H 1.08994 * 109.47353 * 59.99860 * 1 2 3 32 32 H 1.08994 * 109.46949 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47123 * 299.99798 * 1 2 3 34 34 H 1.09008 * 109.47069 * 240.00355 * 2 1 3 35 35 H 1.08994 * 109.47353 * 120.00140 * 2 1 3 36 36 H 1.08004 * 120.43647 * 359.97438 * 5 4 3 37 37 H 1.08003 * 120.75211 * 180.02562 * 6 5 4 38 38 H 1.08007 * 120.34989 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47190 * 244.99946 * 9 8 7 40 40 H 1.08993 * 109.47582 * 5.00637 * 9 8 7 41 41 H 0.96991 * 120.00445 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.49492 * 61.29747 * 15 13 12 43 43 H 1.09002 * 109.49976 * 181.39220 * 15 13 12 44 44 H 1.08997 * 109.58964 * 65.15061 * 16 15 13 45 45 H 1.09005 * 109.58524 * 185.57861 * 16 15 13 46 46 H 0.97002 * 119.99195 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.58518 * 66.18513 * 26 17 16 48 48 H 1.08998 * 109.58888 * 186.46504 * 26 17 16 49 49 H 1.08999 * 109.47332 * 59.98789 * 29 27 13 50 50 H 1.09004 * 109.47579 * 179.97438 * 29 27 13 51 51 H 1.09005 * 109.46583 * 299.99570 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8753 2.8117 0.0000 6 6 5.2489 2.9793 0.0000 7 6 6.0539 1.8482 0.0000 8 6 5.4647 0.5999 -0.0005 9 6 6.3323 -0.6323 -0.0011 10 6 5.9551 -1.5127 1.1624 11 8 5.0687 -1.1732 1.9174 12 7 6.6021 -2.6778 1.3633 13 6 6.2350 -3.5339 2.4940 14 1 5.1607 -3.4675 2.6662 15 6 6.9818 -3.0714 3.7473 16 6 8.4906 -3.1336 3.4898 17 7 8.8391 -4.4902 3.0461 18 6 9.8189 -5.2029 3.6843 19 1 9.7817 -6.2823 3.6947 20 6 10.8598 -4.5381 4.3178 21 7 11.1009 -3.2748 4.0380 22 14 11.9185 -5.4365 5.5674 23 1 12.5777 -6.5963 4.9152 24 1 12.9537 -4.5117 6.0952 25 1 11.0660 -5.9158 6.6850 26 6 8.1166 -5.0674 1.9044 27 6 6.6122 -4.9834 2.1797 28 1 6.3621 -5.6172 3.0304 29 6 5.8407 -5.4558 0.9458 30 7 4.1512 0.4719 -0.0015 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.2193 3.6696 0.0004 37 1 5.6847 3.9675 0.0008 38 1 7.1297 1.9440 -0.0005 39 1 6.1863 -1.1790 -0.9327 40 1 7.3785 -0.3401 0.0886 41 1 7.3107 -2.9495 0.7593 42 1 6.6950 -2.0467 3.9842 43 1 6.7281 -3.7232 4.5833 44 1 8.7590 -2.4155 2.7151 45 1 9.0280 -2.9006 4.4091 46 1 11.8285 -2.8104 4.4805 47 1 8.3546 -4.5070 1.0003 48 1 8.4091 -6.1095 1.7759 49 1 6.0925 -4.8223 0.0953 50 1 6.1100 -6.4881 0.7220 51 1 4.7701 -5.3934 1.1409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942524866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:58 Heat of formation + Delta-G solvation = -24.308672 kcal Electronic energy + Delta-G solvation = -31332.954941 eV Core-core repulsion = 27233.054058 eV Total energy + Delta-G solvation = -4099.900883 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.79556 -39.69935 -38.25120 -37.40686 -34.21786 -33.15856 -32.49975 -32.26426 -31.27480 -30.99073 -29.97984 -27.97068 -25.84499 -25.17992 -24.07920 -22.93078 -22.35879 -21.88759 -21.09345 -20.34624 -18.55677 -18.30176 -17.23075 -16.66233 -16.55347 -16.24551 -16.06274 -15.24239 -15.04687 -14.81962 -14.29903 -14.14903 -14.03917 -13.91274 -13.74824 -13.43833 -13.22027 -13.10966 -12.97689 -12.71237 -12.60191 -12.36570 -12.16422 -12.08724 -11.83795 -11.60443 -11.45829 -11.36300 -11.06748 -10.80734 -10.79407 -10.69442 -10.37498 -10.21374 -10.04206 -9.90755 -9.73197 -9.63965 -9.45559 -9.39207 -8.54416 -8.47671 -8.44291 -6.68874 -5.81304 -3.24275 1.05248 1.26351 2.95795 3.02124 3.36666 3.42885 3.44060 3.45617 3.84089 4.04293 4.47150 4.63249 4.88240 4.89297 4.96065 4.99411 5.06335 5.12681 5.23596 5.29665 5.31202 5.33260 5.37157 5.39042 5.50331 5.59964 5.62726 5.64297 5.71320 5.80651 5.93334 5.93946 5.99747 6.09798 6.10152 6.17854 6.28822 6.35318 6.39495 6.46639 6.66601 6.66913 6.78739 6.90526 7.05856 7.21648 7.36908 7.65806 7.77417 7.87560 7.94013 8.42569 8.62971 9.18763 9.81993 10.38201 11.26725 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002563 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.447319 B =10923.847759 C =11996.050818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.067 3.933 3 O -0.311 6.311 4 C 0.325 3.675 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.205 4.205 8 C 0.190 3.810 9 C -0.097 4.097 10 C 0.519 3.481 11 O -0.533 6.533 12 N -0.713 5.713 13 C 0.163 3.837 14 H 0.071 0.929 15 C -0.154 4.154 16 C 0.176 3.824 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.153 3.847 27 C -0.119 4.119 28 H 0.080 0.920 29 C -0.140 4.140 30 N -0.510 5.510 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.400 0.600 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.018 0.982 45 H 0.084 0.916 46 H 0.254 0.746 47 H 0.014 0.986 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.052 0.948 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.541 8.355 -11.739 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.218 6.218 4 C 0.145 3.855 5 C -0.219 4.219 6 C -0.067 4.067 7 C -0.226 4.226 8 C 0.053 3.947 9 C -0.138 4.138 10 C 0.304 3.696 11 O -0.409 6.409 12 N -0.365 5.365 13 C 0.059 3.941 14 H 0.089 0.911 15 C -0.194 4.194 16 C 0.050 3.950 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.026 3.974 27 C -0.140 4.140 28 H 0.098 0.902 29 C -0.198 4.198 30 N -0.233 5.233 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.235 0.765 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.036 0.964 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.635 8.044 -11.112 20.800 hybrid contribution 1.416 0.082 0.446 1.486 sum -14.219 8.126 -10.667 19.545 Atomic orbital electron populations 1.21812 0.93277 1.02809 1.03001 1.22585 0.94362 0.80998 1.02905 1.86190 1.16982 1.30811 1.87845 1.19726 0.84010 0.89763 0.91959 1.21020 0.95899 0.95675 1.09276 1.21325 0.92280 0.99282 0.93854 1.21792 1.01489 0.92510 1.06777 1.20189 0.88595 0.93537 0.92396 1.20683 0.99892 0.93544 0.99662 1.20046 0.82046 0.81638 0.85857 1.90698 1.30758 1.72377 1.47045 1.46066 1.38771 1.20856 1.30836 1.20828 0.98435 0.88892 0.85933 0.91130 1.22562 1.00407 1.00067 0.96398 1.20700 0.88749 0.85491 1.00019 1.44057 1.40352 1.14875 1.32084 1.19122 1.00358 0.90397 1.28536 0.91789 1.25031 0.96756 0.96488 1.01207 1.70017 1.31228 1.10275 1.43040 0.86383 0.79824 0.78806 0.81814 1.20902 1.21662 1.21040 1.20894 0.88802 0.97536 0.90178 1.21937 0.98741 0.94917 0.98366 0.90185 1.21752 0.99409 1.00682 0.97987 1.67045 1.05813 1.32963 1.17513 0.91907 0.90377 0.91741 0.91871 0.91067 0.84448 0.84174 0.84410 0.87199 0.86932 0.76480 0.92844 0.91994 0.96382 0.89764 0.93602 0.96873 0.92588 0.93048 0.92850 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.90 16 2 C 0.07 0.78 6.03 37.16 0.22 1.00 16 3 O -0.31 -4.13 10.12 -18.73 -0.19 -4.32 16 4 C 0.32 4.51 7.49 -17.12 -0.13 4.38 16 5 C -0.20 -2.24 10.04 -39.28 -0.39 -2.64 16 6 C -0.04 -0.42 10.17 -39.31 -0.40 -0.82 16 7 C -0.21 -2.27 9.70 -39.44 -0.38 -2.66 16 8 C 0.19 2.53 5.76 -82.61 -0.48 2.06 16 9 C -0.10 -1.16 6.10 -29.04 -0.18 -1.33 16 10 C 0.52 8.17 7.73 -10.99 -0.08 8.09 16 11 O -0.53 -10.36 15.00 5.55 0.08 -10.28 16 12 N -0.71 -10.97 3.60 -53.76 -0.19 -11.16 16 13 C 0.16 2.79 2.21 -67.89 -0.15 2.64 16 14 H 0.07 1.26 7.58 -51.93 -0.39 0.86 16 15 C -0.15 -3.06 5.77 -26.61 -0.15 -3.22 16 16 C 0.18 4.09 5.04 -3.71 -0.02 4.07 16 17 N -0.59 -14.05 2.99 -172.34 -0.52 -14.56 16 18 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 19 H 0.06 1.67 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 21 N -0.90 -25.57 11.20 55.49 0.62 -24.95 16 22 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.15 2.92 5.50 -3.72 -0.02 2.90 16 27 C -0.12 -1.93 2.67 -90.51 -0.24 -2.17 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 C -0.14 -1.84 9.05 37.16 0.34 -1.51 16 30 N -0.51 -7.59 8.08 -9.55 -0.08 -7.66 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.73 8.10 -51.92 -0.42 0.31 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 37 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 38 H 0.14 1.20 7.94 -52.48 -0.42 0.78 16 39 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.11 1.10 7.86 -51.93 -0.41 0.69 16 41 H 0.40 5.71 6.73 -40.82 -0.27 5.43 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 45 H 0.08 2.25 6.06 -51.93 -0.31 1.94 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.01 0.25 6.64 -51.93 -0.34 -0.10 16 48 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 49 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 407.75 15.07 6.14 6.14 Total: -1.00 -32.55 407.75 -9.47 -42.02 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.40 Total: 5.39 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.92 Total: 3.01 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.17 Total: -58.33 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.11 Total: -14.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.55 -9.47 -42.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942524866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.712 kcal (2) G-P(sol) polarization free energy of solvation -32.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds