Wall clock time and date at job start Wed Apr 1 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.46807 * 2 1 4 4 C 1.35678 * 116.99828 * 180.02562 * 3 2 1 5 5 C 1.38918 * 119.68967 * 180.02562 * 4 3 2 6 6 C 1.38377 * 119.11548 * 179.97438 * 5 4 3 7 7 C 1.38827 * 118.48307 * 359.97438 * 6 5 4 8 8 C 1.38043 * 119.29338 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.58202 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47003 * 125.00325 * 9 8 7 11 11 O 1.21287 * 119.99825 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00082 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.46523 * 35.00114 * 13 12 10 15 15 C 1.53043 * 109.46161 * 275.02579 * 13 12 10 16 16 C 1.53188 * 109.31020 * 301.34845 * 15 13 12 17 17 N 1.46925 * 108.77924 * 305.35892 * 16 15 13 18 18 C 1.36940 * 120.63396 * 233.59500 * 17 16 15 19 19 H 1.08000 * 119.99970 * 151.82575 * 18 17 16 20 20 C 1.38814 * 119.99455 * 331.82410 * 18 17 16 21 21 N 1.31614 * 120.00045 * 343.08722 * 20 18 17 22 22 Si 1.86799 * 119.99567 * 163.09261 * 20 18 17 23 23 H 1.48494 * 109.47464 * 59.99333 * 22 20 18 24 24 H 1.48500 * 109.47135 * 179.97438 * 22 20 18 25 25 H 1.48512 * 109.46916 * 299.99704 * 22 20 18 26 26 C 1.46923 * 118.73509 * 53.60626 * 17 16 15 27 27 C 1.53042 * 109.46382 * 154.97280 * 13 12 10 28 28 H 1.08994 * 109.50069 * 178.60272 * 27 13 12 29 29 C 1.52999 * 109.49813 * 298.70738 * 27 13 12 30 30 N 1.31970 * 120.83244 * 0.02562 * 8 7 6 31 31 H 1.08994 * 109.47353 * 59.99860 * 1 2 3 32 32 H 1.08994 * 109.46949 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47123 * 299.99798 * 1 2 3 34 34 H 1.09008 * 109.47069 * 240.00355 * 2 1 3 35 35 H 1.08994 * 109.47353 * 120.00140 * 2 1 3 36 36 H 1.08004 * 120.43647 * 359.97438 * 5 4 3 37 37 H 1.08003 * 120.75211 * 180.02562 * 6 5 4 38 38 H 1.08007 * 120.34989 * 179.97438 * 7 6 5 39 39 H 1.08998 * 109.47190 * 244.99946 * 9 8 7 40 40 H 1.08993 * 109.47582 * 5.00637 * 9 8 7 41 41 H 0.96991 * 120.00445 * 0.02562 * 12 10 9 42 42 H 1.09005 * 109.49492 * 61.29747 * 15 13 12 43 43 H 1.09002 * 109.49976 * 181.39220 * 15 13 12 44 44 H 1.08997 * 109.58964 * 65.15061 * 16 15 13 45 45 H 1.09005 * 109.58524 * 185.57861 * 16 15 13 46 46 H 0.97002 * 119.99195 * 180.02562 * 21 20 18 47 47 H 1.09005 * 109.58518 * 66.18513 * 26 17 16 48 48 H 1.08998 * 109.58888 * 186.46504 * 26 17 16 49 49 H 1.08999 * 109.47332 * 59.98789 * 29 27 13 50 50 H 1.09004 * 109.47579 * 179.97438 * 29 27 13 51 51 H 1.09005 * 109.46583 * 299.99570 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8753 2.8117 0.0000 6 6 5.2489 2.9793 0.0000 7 6 6.0539 1.8482 0.0000 8 6 5.4647 0.5999 -0.0005 9 6 6.3323 -0.6323 -0.0011 10 6 5.9551 -1.5127 1.1624 11 8 5.0687 -1.1732 1.9174 12 7 6.6021 -2.6778 1.3633 13 6 6.2350 -3.5339 2.4940 14 1 5.1607 -3.4675 2.6662 15 6 6.9818 -3.0714 3.7473 16 6 8.4906 -3.1336 3.4898 17 7 8.8391 -4.4902 3.0461 18 6 9.8189 -5.2029 3.6843 19 1 9.7817 -6.2823 3.6947 20 6 10.8598 -4.5381 4.3178 21 7 11.1009 -3.2748 4.0380 22 14 11.9185 -5.4365 5.5674 23 1 12.5777 -6.5963 4.9152 24 1 12.9537 -4.5117 6.0952 25 1 11.0660 -5.9158 6.6850 26 6 8.1166 -5.0674 1.9044 27 6 6.6122 -4.9834 2.1797 28 1 6.3621 -5.6172 3.0304 29 6 5.8407 -5.4558 0.9458 30 7 4.1512 0.4719 -0.0015 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.2193 3.6696 0.0004 37 1 5.6847 3.9675 0.0008 38 1 7.1297 1.9440 -0.0005 39 1 6.1863 -1.1790 -0.9327 40 1 7.3785 -0.3401 0.0886 41 1 7.3107 -2.9495 0.7593 42 1 6.6950 -2.0467 3.9842 43 1 6.7281 -3.7232 4.5833 44 1 8.7590 -2.4155 2.7151 45 1 9.0280 -2.9006 4.4091 46 1 11.8285 -2.8104 4.4805 47 1 8.3546 -4.5070 1.0003 48 1 8.4091 -6.1095 1.7759 49 1 6.0925 -4.8223 0.0953 50 1 6.1100 -6.4881 0.7220 51 1 4.7701 -5.3934 1.1409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942524866.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:57 Heat of formation + Delta-G solvation = -44.850006 kcal Electronic energy + Delta-G solvation = -31333.845680 eV Core-core repulsion = 27233.054058 eV Total energy + Delta-G solvation = -4100.791622 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.75424 -41.00356 -39.36587 -38.70206 -35.94208 -34.15085 -33.84591 -33.13544 -32.87429 -32.20142 -31.46857 -28.97039 -27.37690 -26.87419 -24.96399 -24.07711 -23.56978 -23.08628 -22.69665 -21.54519 -20.05331 -19.26481 -18.71513 -18.22018 -17.54144 -17.22270 -16.87423 -16.82626 -16.48194 -16.29011 -15.73454 -15.50079 -15.12618 -15.06084 -15.02253 -14.75923 -14.56694 -14.37014 -14.21605 -13.87650 -13.50907 -13.41331 -13.37224 -13.13049 -12.97561 -12.91973 -12.75792 -12.68140 -12.51718 -12.44505 -12.34746 -12.21472 -11.93716 -11.69886 -11.64887 -11.44231 -11.10144 -10.86223 -10.74481 -10.50906 -10.46712 -9.90193 -9.38978 -8.63773 -7.85605 -5.30174 0.15681 0.40841 1.47208 1.50057 1.55793 1.79396 2.09586 2.29875 2.52287 2.87331 3.13377 3.29563 3.68167 3.79266 3.81657 4.01697 4.04990 4.07920 4.09862 4.15059 4.17802 4.21642 4.37184 4.43227 4.44173 4.50773 4.55396 4.61774 4.68379 4.77887 4.79759 4.84547 4.86032 4.92335 5.00387 5.03255 5.05020 5.12900 5.18372 5.21969 5.26949 5.32135 5.44831 5.53654 5.56186 5.64234 5.68610 5.76610 6.28832 6.40765 6.68992 6.96777 7.16859 7.39833 7.88481 8.39521 9.19947 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015919 B = 0.002563 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.447319 B =10923.847759 C =11996.050818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 O -0.320 6.320 4 C 0.293 3.707 5 C -0.200 4.200 6 C -0.038 4.038 7 C -0.205 4.205 8 C 0.161 3.839 9 C -0.090 4.090 10 C 0.517 3.483 11 O -0.573 6.573 12 N -0.707 5.707 13 C 0.172 3.828 14 H 0.067 0.933 15 C -0.142 4.142 16 C 0.191 3.809 17 N -0.607 5.607 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.048 4.048 21 N -0.931 5.931 22 Si 0.961 3.039 23 H -0.274 1.274 24 H -0.296 1.296 25 H -0.283 1.283 26 C 0.151 3.849 27 C -0.106 4.106 28 H 0.072 0.928 29 C -0.132 4.132 30 N -0.537 5.537 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.157 0.843 37 H 0.178 0.822 38 H 0.164 0.836 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.407 0.593 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.007 0.993 45 H 0.044 0.956 46 H 0.248 0.752 47 H 0.028 0.972 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.067 0.933 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.814 8.429 -13.308 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 O -0.228 6.228 4 C 0.114 3.886 5 C -0.221 4.221 6 C -0.063 4.063 7 C -0.225 4.225 8 C 0.024 3.976 9 C -0.130 4.130 10 C 0.304 3.696 11 O -0.452 6.452 12 N -0.359 5.359 13 C 0.067 3.933 14 H 0.085 0.915 15 C -0.183 4.183 16 C 0.065 3.935 17 N -0.330 5.330 18 C -0.392 4.392 19 H 0.084 0.916 20 C -0.244 4.244 21 N -0.577 5.577 22 Si 0.790 3.210 23 H -0.199 1.199 24 H -0.223 1.223 25 H -0.209 1.209 26 C 0.026 3.974 27 C -0.127 4.127 28 H 0.090 0.910 29 C -0.189 4.189 30 N -0.261 5.261 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.175 0.825 37 H 0.196 0.804 38 H 0.181 0.819 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.244 0.756 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.025 0.975 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.086 0.914 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.912 8.089 -12.718 21.918 hybrid contribution 1.492 0.083 0.928 1.759 sum -14.421 8.172 -11.790 20.341 Atomic orbital electron populations 1.21806 0.90743 1.04074 1.03465 1.22608 0.96285 0.80459 1.01320 1.86179 1.17178 1.31361 1.88121 1.20165 0.84172 0.90761 0.93480 1.21386 0.97054 0.95311 1.08336 1.21805 0.91594 1.00740 0.92121 1.22161 1.02974 0.91998 1.05359 1.20544 0.88428 0.94910 0.93680 1.20736 1.00845 0.92714 0.98664 1.20734 0.81078 0.81537 0.86297 1.90685 1.32553 1.73189 1.48783 1.45987 1.38911 1.20790 1.30246 1.20620 0.97624 0.89784 0.85316 0.91465 1.22388 0.98466 0.99484 0.97922 1.20374 0.90076 0.85361 0.97683 1.44253 1.40364 1.14802 1.33616 1.19446 1.00523 0.90803 1.28390 0.91579 1.25722 0.98318 0.97259 1.03068 1.70154 1.31817 1.11574 1.44121 0.85435 0.78139 0.77776 0.79651 1.19928 1.22252 1.20931 1.21067 0.89916 0.97411 0.89048 1.21779 0.97014 0.94080 0.99790 0.91009 1.21676 0.99267 1.01613 0.96378 1.66972 1.06783 1.33968 1.18344 0.90852 0.88707 0.91769 0.92239 0.93826 0.82489 0.80424 0.81885 0.84858 0.84540 0.75591 0.93829 0.92661 0.97472 0.93754 0.94249 0.95467 0.92444 0.92017 0.91398 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 10.28 71.98 0.74 -1.62 16 2 C 0.07 1.65 6.03 71.98 0.43 2.09 16 3 O -0.32 -8.67 10.12 -89.95 -0.91 -9.58 16 4 C 0.29 8.18 7.49 84.79 0.63 8.81 16 5 C -0.20 -4.29 10.04 22.47 0.23 -4.06 16 6 C -0.04 -0.65 10.17 22.44 0.23 -0.43 16 7 C -0.20 -4.09 9.70 22.36 0.22 -3.88 16 8 C 0.16 4.13 5.76 42.49 0.24 4.38 16 9 C -0.09 -1.99 6.10 29.10 0.18 -1.81 16 10 C 0.52 15.93 7.73 87.66 0.68 16.61 16 11 O -0.57 -22.60 15.00 -3.05 -0.05 -22.65 16 12 N -0.71 -21.01 3.60 -442.39 -1.59 -22.60 16 13 C 0.17 5.78 2.21 45.02 0.10 5.88 16 14 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 15 C -0.14 -5.76 5.77 30.67 0.18 -5.59 16 16 C 0.19 9.06 5.04 86.36 0.44 9.49 16 17 N -0.61 -28.87 2.99 -699.15 -2.09 -30.97 16 18 C -0.26 -13.92 9.58 84.03 0.81 -13.11 16 19 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 20 C -0.05 -2.63 4.92 84.86 0.42 -2.21 16 21 N -0.93 -53.88 11.20 21.65 0.24 -53.64 16 22 Si 0.96 44.35 29.59 68.60 2.03 46.38 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 26 C 0.15 5.58 5.50 86.35 0.48 6.05 16 27 C -0.11 -3.28 2.67 -10.72 -0.03 -3.31 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 C -0.13 -3.09 9.05 71.98 0.65 -2.44 16 30 N -0.54 -16.04 8.08 -296.99 -2.40 -18.44 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 35 H 0.04 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.16 2.31 7.94 -2.91 -0.02 2.29 16 39 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.14 2.33 7.86 -2.39 -0.02 2.32 16 41 H 0.41 10.89 6.73 -92.72 -0.62 10.27 16 42 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 43 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.01 0.35 7.74 -2.39 -0.02 0.33 16 45 H 0.04 2.46 6.06 -2.38 -0.01 2.44 16 46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.03 0.95 6.64 -2.38 -0.02 0.93 16 48 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 49 H 0.06 1.34 7.54 -2.39 -0.02 1.32 16 50 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -72.99 407.75 2.14 -70.84 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.30 Total: 25.80 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 6.61 Total: 14.85 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -5.84 Total: -125.64 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -0.96 Total: -32.23 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.99 2.14 -70.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942524866.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.994 kcal (2) G-P(sol) polarization free energy of solvation -72.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds