Wall clock time and date at job start Wed Apr 1 2020 04:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47031 * 2 1 4 4 C 1.35677 * 117.00168 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.68737 * 180.02562 * 4 3 2 6 6 C 1.38374 * 119.11297 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48672 * 359.97438 * 6 5 4 8 8 C 1.38049 * 119.28726 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.58221 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47084 * 125.00391 * 9 8 7 11 11 O 1.21284 * 120.00311 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99946 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00145 * 179.72110 * 12 10 9 14 14 H 1.08998 * 109.45847 * 325.27087 * 13 12 10 15 15 C 1.53044 * 109.45896 * 85.24591 * 13 12 10 16 16 C 1.53194 * 109.30929 * 181.39936 * 15 13 12 17 17 N 1.46925 * 108.76728 * 305.34212 * 16 15 13 18 18 C 1.36937 * 120.63141 * 233.59640 * 17 16 15 19 19 H 1.07992 * 120.00000 * 27.69345 * 18 17 16 20 20 C 1.38815 * 119.99835 * 207.69109 * 18 17 16 21 21 N 1.31620 * 119.99966 * 17.36906 * 20 18 17 22 22 Si 1.86796 * 119.99920 * 197.36446 * 20 18 17 23 23 H 1.48505 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46829 * 120.00173 * 22 20 18 25 25 H 1.48498 * 109.47410 * 239.99993 * 22 20 18 26 26 C 1.46927 * 118.73676 * 53.62069 * 17 16 15 27 27 C 1.53038 * 109.46091 * 205.29992 * 13 12 10 28 28 H 1.08997 * 109.49988 * 298.56614 * 27 13 12 29 29 C 1.53002 * 109.49719 * 58.62947 * 27 13 12 30 30 N 1.31968 * 120.83476 * 0.27420 * 8 7 6 31 31 H 1.08997 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47422 * 300.00383 * 1 2 3 33 33 H 1.09000 * 109.47134 * 59.99800 * 1 2 3 34 34 H 1.08998 * 109.47336 * 240.00162 * 2 1 3 35 35 H 1.09001 * 109.46644 * 120.00010 * 2 1 3 36 36 H 1.08003 * 120.44141 * 359.96019 * 5 4 3 37 37 H 1.08002 * 120.75950 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.35921 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47059 * 4.99949 * 9 8 7 40 40 H 1.08999 * 109.46575 * 245.00109 * 9 8 7 41 41 H 0.97006 * 119.99661 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.49743 * 301.33445 * 15 13 12 43 43 H 1.08997 * 109.49952 * 61.43346 * 15 13 12 44 44 H 1.09002 * 109.57889 * 185.56273 * 16 15 13 45 45 H 1.09003 * 109.71500 * 65.20692 * 16 15 13 46 46 H 0.97003 * 120.00008 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.58379 * 186.60667 * 26 17 16 48 48 H 1.09004 * 109.58876 * 66.17448 * 26 17 16 49 49 H 1.09000 * 109.47014 * 60.00509 * 29 27 13 50 50 H 1.09004 * 109.46722 * 179.97438 * 29 27 13 51 51 H 1.09000 * 109.47020 * 299.99991 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8117 0.0011 6 6 5.2488 2.9793 0.0022 7 6 6.0539 1.8483 0.0032 8 6 5.4646 0.5999 0.0037 9 6 6.3322 -0.6324 0.0054 10 6 5.9540 -1.5114 1.1695 11 8 5.0675 -1.1706 1.9239 12 7 6.6015 -2.6757 1.3730 13 6 6.2380 -3.5274 2.5082 14 1 5.9516 -2.9024 3.3540 15 6 5.0620 -4.4250 2.1162 16 6 4.6622 -5.2891 3.3164 17 7 5.8466 -6.0188 3.7890 18 6 5.8168 -7.3805 3.9303 19 1 5.1542 -7.9727 3.3167 20 6 6.6383 -7.9997 4.8623 21 7 7.1826 -7.2945 5.8312 22 14 6.9712 -9.8338 4.7414 23 1 6.2472 -10.3922 3.5712 24 1 8.4293 -10.0624 4.5760 25 1 6.5024 -10.5048 5.9805 26 6 7.0635 -5.2596 4.1075 27 6 7.4363 -4.3956 2.8986 28 1 7.7076 -5.0388 2.0616 29 6 8.6219 -3.4977 3.2578 30 7 4.1512 0.4719 -0.0023 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2193 3.6697 0.0005 37 1 5.6847 3.9675 0.0022 38 1 7.1296 1.9440 0.0037 39 1 7.3784 -0.3400 0.0956 40 1 6.1871 -1.1801 -0.9257 41 1 7.3107 -2.9481 0.7698 42 1 4.2164 -3.8063 1.8158 43 1 5.3559 -5.0680 1.2865 44 1 3.8919 -5.9989 3.0149 45 1 4.2811 -4.6539 4.1160 46 1 7.7564 -7.7273 6.4827 47 1 7.8777 -5.9500 4.3281 48 1 6.8798 -4.6201 4.9709 49 1 8.3506 -2.8556 4.0957 50 1 9.4750 -4.1166 3.5362 51 1 8.8847 -2.8816 2.3980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942524869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:08 Heat of formation + Delta-G solvation = -26.513410 kcal Electronic energy + Delta-G solvation = -30990.601416 eV Core-core repulsion = 26890.604929 eV Total energy + Delta-G solvation = -4099.996488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.87773 -39.65369 -38.25321 -37.44437 -34.46228 -33.26140 -32.42774 -32.23224 -31.82950 -31.13872 -29.49465 -28.03327 -25.92361 -25.01279 -24.09691 -23.00010 -22.43435 -21.84359 -20.85358 -20.14849 -19.22101 -18.39711 -17.23726 -16.69262 -16.55264 -16.24432 -16.17092 -15.81583 -15.06647 -14.76233 -14.29191 -14.18795 -14.08129 -13.81208 -13.64255 -13.50833 -13.25146 -13.04214 -12.90330 -12.70984 -12.56073 -12.49714 -12.19318 -12.12147 -11.92793 -11.61528 -11.44175 -11.29162 -11.07828 -10.81804 -10.73409 -10.64873 -10.31752 -10.15949 -10.00803 -9.98488 -9.84419 -9.69837 -9.61120 -9.37447 -8.64646 -8.56178 -8.44520 -6.68508 -5.79639 -3.21274 0.95709 1.16907 2.86657 2.92649 3.31272 3.36711 3.44507 3.46752 3.73506 3.93841 4.49129 4.49703 4.81396 4.86852 4.90889 4.92559 4.97644 5.05688 5.19000 5.19214 5.26917 5.30331 5.33822 5.47079 5.51806 5.60105 5.61842 5.69739 5.73021 5.75242 5.90451 5.90649 5.99352 6.09993 6.15256 6.26746 6.27573 6.37651 6.49260 6.54097 6.62164 6.70593 6.81126 6.99501 7.01096 7.16345 7.34141 7.61950 7.76505 7.80034 7.82668 8.44236 8.49398 9.20678 9.84043 10.41048 11.29096 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002393 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.717944 B =11699.076747 C =12977.637123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.328 3.672 5 C -0.197 4.197 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.188 3.812 9 C -0.096 4.096 10 C 0.515 3.485 11 O -0.524 6.524 12 N -0.724 5.724 13 C 0.159 3.841 14 H 0.080 0.920 15 C -0.138 4.138 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.181 3.819 27 C -0.122 4.122 28 H 0.067 0.933 29 C -0.138 4.138 30 N -0.510 5.510 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.394 0.606 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.019 0.981 46 H 0.253 0.747 47 H 0.092 0.908 48 H 0.020 0.980 49 H 0.050 0.950 50 H 0.054 0.946 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.600 19.248 -15.256 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.149 3.851 5 C -0.218 4.218 6 C -0.067 4.067 7 C -0.229 4.229 8 C 0.051 3.949 9 C -0.137 4.137 10 C 0.300 3.700 11 O -0.400 6.400 12 N -0.375 5.375 13 C 0.056 3.944 14 H 0.098 0.902 15 C -0.179 4.179 16 C 0.020 3.980 17 N -0.316 5.316 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.054 3.946 27 C -0.143 4.143 28 H 0.085 0.915 29 C -0.196 4.196 30 N -0.233 5.233 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.228 0.772 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.063 0.937 47 H 0.110 0.890 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.073 0.927 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.789 18.762 -14.558 23.910 hybrid contribution 1.005 -0.476 -0.280 1.147 sum -1.784 18.285 -14.838 23.616 Atomic orbital electron populations 1.21817 0.93146 1.02973 1.02984 1.22618 0.94500 0.80766 1.03011 1.86196 1.16846 1.31039 1.87657 1.19744 0.84114 0.89704 0.91587 1.21038 0.95918 0.95740 1.09121 1.21315 0.92309 0.99240 0.93873 1.21737 1.01264 0.92533 1.07345 1.20179 0.88707 0.93448 0.92608 1.20686 0.99556 0.93654 0.99782 1.20115 0.82339 0.81580 0.85975 1.90734 1.29917 1.72715 1.46609 1.46271 1.38883 1.21162 1.31182 1.21012 0.95244 0.90536 0.87628 0.90220 1.22367 0.97290 0.97961 1.00259 1.20874 0.90449 0.93705 0.92929 1.44114 1.06921 1.03347 1.77180 1.19231 1.22567 0.81763 1.14457 0.91609 1.25041 1.01782 0.97788 0.95113 1.70042 1.35488 1.34991 1.14182 0.86240 0.77784 0.85425 0.77442 1.20275 1.21577 1.21738 1.20803 0.90813 0.92764 0.90181 1.22159 0.93228 0.96695 1.02216 0.91474 1.21720 0.98248 0.99191 1.00455 1.67058 1.05776 1.33038 1.17440 0.90219 0.91689 0.91939 0.91822 0.90918 0.84360 0.84191 0.84607 0.87264 0.87125 0.77223 0.92702 0.92404 0.92665 0.96282 0.93674 0.89013 0.96222 0.93090 0.92673 0.93856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.07 0.79 6.03 37.16 0.22 1.01 16 3 O -0.31 -4.06 10.12 -18.73 -0.19 -4.25 16 4 C 0.33 4.37 7.49 -17.12 -0.13 4.24 16 5 C -0.20 -2.07 10.04 -39.28 -0.39 -2.47 16 6 C -0.04 -0.37 10.17 -39.31 -0.40 -0.76 16 7 C -0.21 -1.96 9.71 -39.43 -0.38 -2.34 16 8 C 0.19 2.24 5.75 -82.60 -0.48 1.77 16 9 C -0.10 -0.95 6.10 -29.03 -0.18 -1.12 16 10 C 0.52 7.31 7.73 -10.99 -0.08 7.22 16 11 O -0.52 -9.84 15.00 5.55 0.08 -9.75 16 12 N -0.72 -9.73 4.36 -53.77 -0.23 -9.96 16 13 C 0.16 2.74 1.88 -67.89 -0.13 2.62 16 14 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 15 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 16 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 17 N -0.59 -14.82 2.99 -172.31 -0.52 -15.33 16 18 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 19 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 21 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 22 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.18 4.21 4.60 -3.71 -0.02 4.19 16 27 C -0.12 -2.19 2.46 -90.50 -0.22 -2.41 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 C -0.14 -2.09 9.03 37.16 0.34 -1.75 16 30 N -0.51 -7.22 8.09 -9.55 -0.08 -7.30 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 36 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.14 0.87 7.94 -52.49 -0.42 0.46 16 39 H 0.11 0.71 7.86 -51.93 -0.41 0.30 16 40 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.39 4.13 8.31 -40.82 -0.34 3.79 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.04 0.53 7.36 -51.93 -0.38 0.15 16 LS Contribution 411.68 15.07 6.20 6.20 Total: -1.00 -33.72 411.68 -9.56 -43.29 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.55 Total: 3.33 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -1.87 Total: 2.66 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.21 Total: -57.95 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.11 Total: -14.00 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.72 -9.56 -43.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942524869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.773 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds