Wall clock time and date at job start Wed Apr 1 2020 04:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42901 * 109.47031 * 2 1 4 4 C 1.35677 * 117.00168 * 179.97438 * 3 2 1 5 5 C 1.38915 * 119.68737 * 180.02562 * 4 3 2 6 6 C 1.38374 * 119.11297 * 179.97438 * 5 4 3 7 7 C 1.38830 * 118.48672 * 359.97438 * 6 5 4 8 8 C 1.38049 * 119.28726 * 359.97438 * 7 6 5 9 9 C 1.50704 * 119.58221 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47084 * 125.00391 * 9 8 7 11 11 O 1.21284 * 120.00311 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99946 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00145 * 179.72110 * 12 10 9 14 14 H 1.08998 * 109.45847 * 325.27087 * 13 12 10 15 15 C 1.53044 * 109.45896 * 85.24591 * 13 12 10 16 16 C 1.53194 * 109.30929 * 181.39936 * 15 13 12 17 17 N 1.46925 * 108.76728 * 305.34212 * 16 15 13 18 18 C 1.36937 * 120.63141 * 233.59640 * 17 16 15 19 19 H 1.07992 * 120.00000 * 27.69345 * 18 17 16 20 20 C 1.38815 * 119.99835 * 207.69109 * 18 17 16 21 21 N 1.31620 * 119.99966 * 17.36906 * 20 18 17 22 22 Si 1.86796 * 119.99920 * 197.36446 * 20 18 17 23 23 H 1.48505 * 109.47065 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46829 * 120.00173 * 22 20 18 25 25 H 1.48498 * 109.47410 * 239.99993 * 22 20 18 26 26 C 1.46927 * 118.73676 * 53.62069 * 17 16 15 27 27 C 1.53038 * 109.46091 * 205.29992 * 13 12 10 28 28 H 1.08997 * 109.49988 * 298.56614 * 27 13 12 29 29 C 1.53002 * 109.49719 * 58.62947 * 27 13 12 30 30 N 1.31968 * 120.83476 * 0.27420 * 8 7 6 31 31 H 1.08997 * 109.47043 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47422 * 300.00383 * 1 2 3 33 33 H 1.09000 * 109.47134 * 59.99800 * 1 2 3 34 34 H 1.08998 * 109.47336 * 240.00162 * 2 1 3 35 35 H 1.09001 * 109.46644 * 120.00010 * 2 1 3 36 36 H 1.08003 * 120.44141 * 359.96019 * 5 4 3 37 37 H 1.08002 * 120.75950 * 179.97438 * 6 5 4 38 38 H 1.07997 * 120.35921 * 179.97438 * 7 6 5 39 39 H 1.09002 * 109.47059 * 4.99949 * 9 8 7 40 40 H 1.08999 * 109.46575 * 245.00109 * 9 8 7 41 41 H 0.97006 * 119.99661 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.49743 * 301.33445 * 15 13 12 43 43 H 1.08997 * 109.49952 * 61.43346 * 15 13 12 44 44 H 1.09002 * 109.57889 * 185.56273 * 16 15 13 45 45 H 1.09003 * 109.71500 * 65.20692 * 16 15 13 46 46 H 0.97003 * 120.00008 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.58379 * 186.60667 * 26 17 16 48 48 H 1.09004 * 109.58876 * 66.17448 * 26 17 16 49 49 H 1.09000 * 109.47014 * 60.00509 * 29 27 13 50 50 H 1.09004 * 109.46722 * 179.97438 * 29 27 13 51 51 H 1.09000 * 109.47020 * 299.99991 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8117 0.0011 6 6 5.2488 2.9793 0.0022 7 6 6.0539 1.8483 0.0032 8 6 5.4646 0.5999 0.0037 9 6 6.3322 -0.6324 0.0054 10 6 5.9540 -1.5114 1.1695 11 8 5.0675 -1.1706 1.9239 12 7 6.6015 -2.6757 1.3730 13 6 6.2380 -3.5274 2.5082 14 1 5.9516 -2.9024 3.3540 15 6 5.0620 -4.4250 2.1162 16 6 4.6622 -5.2891 3.3164 17 7 5.8466 -6.0188 3.7890 18 6 5.8168 -7.3805 3.9303 19 1 5.1542 -7.9727 3.3167 20 6 6.6383 -7.9997 4.8623 21 7 7.1826 -7.2945 5.8312 22 14 6.9712 -9.8338 4.7414 23 1 6.2472 -10.3922 3.5712 24 1 8.4293 -10.0624 4.5760 25 1 6.5024 -10.5048 5.9805 26 6 7.0635 -5.2596 4.1075 27 6 7.4363 -4.3956 2.8986 28 1 7.7076 -5.0388 2.0616 29 6 8.6219 -3.4977 3.2578 30 7 4.1512 0.4719 -0.0023 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.2193 3.6697 0.0005 37 1 5.6847 3.9675 0.0022 38 1 7.1296 1.9440 0.0037 39 1 7.3784 -0.3400 0.0956 40 1 6.1871 -1.1801 -0.9257 41 1 7.3107 -2.9481 0.7698 42 1 4.2164 -3.8063 1.8158 43 1 5.3559 -5.0680 1.2865 44 1 3.8919 -5.9989 3.0149 45 1 4.2811 -4.6539 4.1160 46 1 7.7564 -7.7273 6.4827 47 1 7.8777 -5.9500 4.3281 48 1 6.8798 -4.6201 4.9709 49 1 8.3506 -2.8556 4.0957 50 1 9.4750 -4.1166 3.5362 51 1 8.8847 -2.8816 2.3980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942524869.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:07 Heat of formation + Delta-G solvation = -49.243743 kcal Electronic energy + Delta-G solvation = -30991.587078 eV Core-core repulsion = 26890.604929 eV Total energy + Delta-G solvation = -4100.982149 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.73027 -40.87592 -39.36315 -38.75772 -36.10533 -34.17943 -33.83210 -33.49015 -33.12703 -32.08966 -31.11917 -28.98364 -27.55273 -26.72643 -24.97469 -24.18324 -23.53676 -22.92488 -22.50533 -21.37503 -20.76738 -19.28099 -18.86925 -17.99230 -17.56245 -17.24321 -17.10169 -16.85179 -16.71939 -16.09122 -15.58453 -15.47580 -15.24129 -15.09942 -14.93569 -14.71311 -14.61225 -14.32399 -14.21764 -13.87004 -13.56391 -13.42851 -13.33768 -13.20401 -12.94928 -12.90965 -12.87226 -12.75202 -12.56890 -12.45971 -12.43525 -12.00921 -11.84259 -11.73658 -11.70524 -11.53116 -11.25166 -10.84919 -10.73267 -10.57802 -10.44776 -9.91146 -9.37897 -8.72827 -7.88974 -5.34745 0.17224 0.42507 1.46527 1.48329 1.59323 1.79203 2.10056 2.24800 2.50618 2.88354 3.15265 3.26109 3.61819 3.78304 3.81569 3.98849 4.02766 4.06915 4.08424 4.17552 4.22293 4.23087 4.34510 4.38491 4.42317 4.53322 4.56100 4.57698 4.69383 4.74838 4.81696 4.83983 4.86537 4.90351 4.94528 5.00682 5.05010 5.08071 5.17057 5.19268 5.27639 5.29423 5.35904 5.50287 5.58726 5.62475 5.65751 5.73359 6.29161 6.37311 6.71750 6.99414 7.12850 7.43133 7.82033 8.35343 9.17990 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.002393 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.717944 B =11699.076747 C =12977.637123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.322 6.322 4 C 0.290 3.710 5 C -0.203 4.203 6 C -0.038 4.038 7 C -0.200 4.200 8 C 0.157 3.843 9 C -0.085 4.085 10 C 0.513 3.487 11 O -0.576 6.576 12 N -0.710 5.710 13 C 0.173 3.827 14 H 0.049 0.951 15 C -0.123 4.123 16 C 0.145 3.855 17 N -0.610 5.610 18 C -0.263 4.263 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.286 1.286 25 H -0.294 1.294 26 C 0.188 3.812 27 C -0.107 4.107 28 H 0.076 0.924 29 C -0.131 4.131 30 N -0.543 5.543 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.041 0.959 36 H 0.154 0.846 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.415 0.585 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.001 0.999 46 H 0.251 0.749 47 H 0.063 0.937 48 H -0.012 1.012 49 H 0.039 0.961 50 H 0.055 0.945 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.301 20.581 -17.909 27.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.005 4.005 3 O -0.230 6.230 4 C 0.112 3.888 5 C -0.223 4.223 6 C -0.063 4.063 7 C -0.219 4.219 8 C 0.020 3.980 9 C -0.125 4.125 10 C 0.300 3.700 11 O -0.454 6.454 12 N -0.362 5.362 13 C 0.068 3.932 14 H 0.067 0.933 15 C -0.163 4.163 16 C 0.019 3.981 17 N -0.333 5.333 18 C -0.393 4.393 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.797 3.203 23 H -0.191 1.191 24 H -0.212 1.212 25 H -0.221 1.221 26 C 0.061 3.939 27 C -0.127 4.127 28 H 0.094 0.906 29 C -0.189 4.189 30 N -0.266 5.266 31 H 0.110 0.890 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.191 0.809 39 H 0.171 0.829 40 H 0.150 0.850 41 H 0.252 0.748 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.019 0.981 46 H 0.060 0.940 47 H 0.082 0.918 48 H 0.006 0.994 49 H 0.058 0.942 50 H 0.074 0.926 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.863 20.107 -17.263 26.515 hybrid contribution 0.382 -0.825 0.590 1.084 sum -0.481 19.282 -16.673 25.496 Atomic orbital electron populations 1.21808 0.90882 1.03986 1.03505 1.22567 0.96225 0.80510 1.01202 1.86173 1.17515 1.31196 1.88136 1.20197 0.84095 0.90889 0.93660 1.21392 0.97361 0.95095 1.08480 1.21835 0.91388 1.01021 0.92105 1.22190 1.03192 0.91554 1.05006 1.20699 0.88312 0.95355 0.93677 1.20772 1.01410 0.92217 0.98074 1.20940 0.81152 0.81510 0.86422 1.90731 1.32169 1.73791 1.48748 1.45970 1.39403 1.20610 1.30209 1.20530 0.94356 0.90141 0.88197 0.93301 1.22153 0.97898 0.97593 0.98655 1.20945 0.89748 0.93751 0.93701 1.44386 1.08337 1.03185 1.77371 1.19545 1.22496 0.83015 1.14290 0.91556 1.25817 1.01865 1.02013 0.94810 1.70203 1.36246 1.36677 1.14962 0.85188 0.77555 0.80225 0.77338 1.19100 1.21235 1.22146 1.20626 0.89388 0.92166 0.91684 1.21884 0.94554 0.96544 0.99744 0.90595 1.21673 0.96699 0.98848 1.01677 1.66991 1.07239 1.34048 1.18355 0.88956 0.91771 0.90705 0.92248 0.94054 0.82817 0.80298 0.80931 0.82859 0.85046 0.74834 0.92755 0.91417 0.92613 0.98091 0.93997 0.91834 0.99432 0.94207 0.92583 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 10.28 71.98 0.74 -1.88 16 2 C 0.07 1.78 6.03 71.98 0.43 2.21 16 3 O -0.32 -8.81 10.12 -89.95 -0.91 -9.72 16 4 C 0.29 7.84 7.49 84.79 0.63 8.47 16 5 C -0.20 -4.01 10.04 22.46 0.23 -3.78 16 6 C -0.04 -0.55 10.17 22.44 0.23 -0.32 16 7 C -0.20 -3.02 9.71 22.37 0.22 -2.80 16 8 C 0.16 3.41 5.75 42.49 0.24 3.65 16 9 C -0.08 -1.38 6.10 29.10 0.18 -1.20 16 10 C 0.51 13.67 7.73 87.66 0.68 14.35 16 11 O -0.58 -21.85 15.00 -3.04 -0.05 -21.89 16 12 N -0.71 -17.46 4.36 -442.41 -1.93 -19.39 16 13 C 0.17 5.91 1.88 45.02 0.08 5.99 16 14 H 0.05 2.01 7.57 -2.39 -0.02 1.99 16 15 C -0.12 -4.55 5.65 30.67 0.17 -4.37 16 16 C 0.14 6.52 6.52 86.36 0.56 7.08 16 17 N -0.61 -31.37 2.99 -699.07 -2.09 -33.47 16 18 C -0.26 -14.64 9.59 84.03 0.81 -13.83 16 19 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 20 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 21 N -0.93 -55.47 11.19 21.65 0.24 -55.23 16 22 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 26 C 0.19 9.04 4.60 86.36 0.40 9.43 16 27 C -0.11 -3.75 2.46 -10.71 -0.03 -3.78 16 28 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 29 C -0.13 -3.74 9.03 71.98 0.65 -3.09 16 30 N -0.54 -15.38 8.09 -296.98 -2.40 -17.79 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.04 1.27 8.11 -2.39 -0.02 1.25 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.17 1.24 7.94 -2.91 -0.02 1.22 16 39 H 0.15 1.12 7.86 -2.39 -0.02 1.10 16 40 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.41 7.02 8.31 -92.70 -0.77 6.25 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.06 2.44 7.93 -2.39 -0.02 2.42 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 47 H 0.06 3.42 6.04 -2.39 -0.01 3.40 16 48 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 49 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.08 1.71 7.36 -2.39 -0.02 1.70 16 Total: -1.00 -79.23 411.68 1.68 -77.55 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.15 Total: 19.44 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 6.64 Total: 13.77 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -6.18 Total: -125.87 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.96 Total: -31.62 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -79.23 1.68 -77.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942524869.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.310 kcal (2) G-P(sol) polarization free energy of solvation -79.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds