Wall clock time and date at job start Wed Apr 1 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47235 * 2 1 4 4 C 1.35424 * 117.00292 * 180.02562 * 3 2 1 5 5 N 1.32242 * 119.79710 * 0.27017 * 4 3 2 6 6 C 1.31881 * 121.79736 * 180.26684 * 5 4 3 7 7 C 1.38360 * 121.18371 * 359.74900 * 6 5 4 8 8 C 1.38332 * 119.45931 * 359.97397 * 7 6 5 9 9 C 1.50710 * 120.82497 * 179.97438 * 8 7 6 10 10 C 1.39985 * 118.35315 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.60136 * 179.97438 * 10 8 7 12 12 O 1.21599 * 119.99718 * 90.00003 * 11 10 8 13 13 N 1.34774 * 120.00393 * 270.00151 * 11 10 8 14 14 C 1.46497 * 120.00325 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.45716 * 324.97313 * 14 13 11 16 16 C 1.53041 * 109.46110 * 84.92836 * 14 13 11 17 17 C 1.52759 * 109.38448 * 181.26009 * 16 14 13 18 18 N 1.46931 * 109.00997 * 305.59177 * 17 16 14 19 19 C 1.36936 * 120.62927 * 233.58601 * 18 17 16 20 20 H 1.08002 * 120.00172 * 153.10341 * 19 18 17 21 21 C 1.38812 * 120.00088 * 333.10162 * 19 18 17 22 22 N 1.31611 * 120.00091 * 158.91661 * 21 19 18 23 23 Si 1.86798 * 119.99879 * 339.18673 * 21 19 18 24 24 H 1.48503 * 109.47513 * 95.07229 * 23 21 19 25 25 H 1.48502 * 109.47210 * 215.07047 * 23 21 19 26 26 H 1.48503 * 109.47342 * 335.07379 * 23 21 19 27 27 C 1.46922 * 118.73721 * 53.30446 * 18 17 16 28 28 C 1.53039 * 109.46133 * 205.00073 * 14 13 11 29 29 H 1.08998 * 109.52118 * 298.58154 * 28 14 13 30 30 C 1.53002 * 109.49729 * 58.65847 * 28 14 13 31 31 H 1.08997 * 109.47247 * 60.00048 * 1 2 3 32 32 H 1.09004 * 109.46899 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47409 * 299.99754 * 1 2 3 34 34 H 1.09003 * 109.46909 * 240.00083 * 2 1 3 35 35 H 1.08997 * 109.47247 * 119.99951 * 2 1 3 36 36 H 1.07996 * 119.41097 * 179.72814 * 6 5 4 37 37 H 1.08004 * 120.27093 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47099 * 270.02629 * 9 8 7 39 39 H 1.09001 * 109.46858 * 30.02858 * 9 8 7 40 40 H 1.08999 * 109.46877 * 150.02261 * 9 8 7 41 41 H 0.97006 * 119.99541 * 359.97438 * 13 11 10 42 42 H 1.08995 * 109.50199 * 301.34401 * 16 14 13 43 43 H 1.09004 * 109.49320 * 61.40046 * 16 14 13 44 44 H 1.08999 * 109.51124 * 185.70870 * 17 16 14 45 45 H 1.08996 * 109.43310 * 65.42539 * 17 16 14 46 46 H 0.97001 * 120.00195 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.58554 * 66.43557 * 27 18 17 48 48 H 1.08996 * 109.58909 * 186.71570 * 27 18 17 49 49 H 1.08999 * 109.46585 * 179.83610 * 30 28 14 50 50 H 1.08993 * 109.47121 * 299.83820 * 30 28 14 51 51 H 1.09006 * 109.46806 * 59.84327 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1508 0.4732 -0.0064 6 6 5.4634 0.6003 -0.0020 7 6 6.0624 1.8475 0.0040 8 6 5.2712 2.9822 0.0047 9 6 5.8912 4.3559 0.0117 10 6 3.8805 2.8229 -0.0001 11 6 2.9899 3.9990 0.0010 12 8 2.6262 4.4871 -1.0516 13 7 2.5795 4.5325 1.1687 14 6 1.6956 5.7007 1.1697 15 1 1.9496 6.3491 0.3311 16 6 0.2421 5.2405 1.0359 17 6 -0.6755 6.4614 1.0057 18 7 -0.4108 7.2886 2.1908 19 6 -1.4306 7.6546 3.0281 20 1 -1.2270 7.8631 4.0681 21 6 -2.7261 7.7576 2.5403 22 7 -3.7477 7.6950 3.3677 23 14 -3.0196 7.9776 0.7087 24 1 -3.2702 6.6534 0.0849 25 1 -4.1991 8.8550 0.4983 26 1 -1.8230 8.5992 0.0867 27 6 0.9699 7.7103 2.4638 28 6 1.8700 6.4709 2.4807 29 1 1.5926 5.8312 3.3185 30 6 3.3304 6.9021 2.6292 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0819 -0.2850 -0.0026 37 1 7.1390 1.9344 0.0072 38 1 6.0371 4.6834 1.0410 39 1 6.8536 4.3227 -0.4990 40 1 5.2312 5.0549 -0.5020 41 1 2.8694 4.1428 2.0084 42 1 0.1239 4.6721 0.1135 43 1 -0.0201 4.6117 1.8868 44 1 -1.7156 6.1353 1.0126 45 1 -0.4782 7.0411 0.1040 46 1 -4.6530 7.7667 3.0268 47 1 1.3042 8.3940 1.6833 48 1 1.0148 8.2103 3.4313 49 1 3.4535 7.4531 3.5616 50 1 3.9703 6.0199 2.6412 51 1 3.6077 7.5408 1.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942530273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:11 Heat of formation + Delta-G solvation = -22.540450 kcal Electronic energy + Delta-G solvation = -32022.535619 eV Core-core repulsion = 27922.711412 eV Total energy + Delta-G solvation = -4099.824207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.21117 -39.59551 -38.42268 -37.74587 -34.66952 -34.18264 -32.74325 -32.29125 -31.59651 -30.59473 -29.82468 -28.38021 -26.41460 -25.42582 -24.08720 -23.78465 -22.25109 -21.78865 -21.40686 -20.43774 -19.66929 -18.31459 -17.67994 -17.31569 -16.74343 -16.56834 -16.11692 -15.51777 -15.01751 -14.61796 -14.51315 -14.35234 -14.23221 -14.06442 -13.50861 -13.45309 -13.38340 -13.28807 -13.08096 -12.98687 -12.74227 -12.71357 -12.44103 -12.22326 -12.09149 -11.93466 -11.72193 -11.64371 -11.55096 -10.99773 -10.97395 -10.60150 -10.55649 -10.36518 -10.11217 -9.99871 -9.95831 -9.79589 -9.54872 -9.45916 -8.79738 -8.78685 -8.58023 -6.97884 -5.93328 -3.28662 0.62461 0.91961 2.59982 2.72623 3.19155 3.37627 3.39950 3.52661 3.56598 3.97280 4.31817 4.56323 4.57799 4.64397 4.75652 4.82134 4.87763 4.92791 5.00545 5.11204 5.16294 5.18928 5.23878 5.28695 5.33798 5.45052 5.46020 5.51155 5.64960 5.67032 5.73308 5.85082 5.88325 5.89789 5.92515 6.05099 6.09101 6.10394 6.16152 6.27800 6.37593 6.47040 6.60115 6.67480 6.72898 6.77562 6.95920 6.97927 7.46963 7.61048 7.96644 8.28711 8.33600 8.94976 9.73887 10.11098 11.22442 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003343 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.127600 B = 8373.099305 C = 9757.416862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.295 6.295 4 C 0.360 3.640 5 N -0.544 5.544 6 C 0.156 3.844 7 C -0.218 4.218 8 C 0.027 3.973 9 C -0.125 4.125 10 C -0.201 4.201 11 C 0.578 3.422 12 O -0.530 6.530 13 N -0.710 5.710 14 C 0.157 3.843 15 H 0.084 0.916 16 C -0.141 4.141 17 C 0.130 3.870 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.086 0.914 21 C 0.024 3.976 22 N -0.908 5.908 23 Si 0.880 3.120 24 H -0.289 1.289 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.159 3.841 28 C -0.116 4.116 29 H 0.076 0.924 30 C -0.142 4.142 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.396 0.604 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.027 0.973 46 H 0.262 0.738 47 H 0.025 0.975 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.047 0.953 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.680 -14.700 -4.792 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.201 6.201 4 C 0.180 3.820 5 N -0.269 5.269 6 C 0.000 4.000 7 C -0.238 4.238 8 C 0.019 3.981 9 C -0.181 4.181 10 C -0.207 4.207 11 C 0.362 3.638 12 O -0.406 6.406 13 N -0.359 5.359 14 C 0.054 3.946 15 H 0.102 0.898 16 C -0.181 4.181 17 C 0.004 3.996 18 N -0.329 5.329 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.551 5.551 23 Si 0.710 3.290 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.032 3.968 28 C -0.137 4.137 29 H 0.094 0.906 30 C -0.200 4.200 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.230 0.770 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.066 0.934 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.570 -14.930 -5.518 26.009 hybrid contribution 0.224 0.244 -0.645 0.725 sum 20.795 -14.685 -6.163 26.193 Atomic orbital electron populations 1.21842 0.92595 1.02926 1.03973 1.22678 0.95178 0.80436 1.02403 1.86297 1.16140 1.31215 1.86497 1.19689 0.84453 0.88348 0.89482 1.67416 1.06605 1.32282 1.20570 1.22551 0.89119 0.97436 0.90907 1.21796 1.01368 0.92428 1.08213 1.20176 0.90428 0.97037 0.90462 1.20952 1.01548 0.92025 1.03613 1.19825 0.94214 0.92550 1.14112 1.17671 0.79555 0.82215 0.84372 1.90816 1.56853 1.61650 1.31300 1.46210 1.49798 1.32132 1.07762 1.21041 0.89227 0.85530 0.98795 0.89826 1.22318 0.94432 0.99724 1.01639 1.21222 0.98258 0.90383 0.89781 1.44391 1.03492 1.57210 1.27846 1.18905 0.86052 1.42332 0.91542 0.89646 1.25243 0.95501 0.99474 0.97249 1.69840 0.98290 1.52472 1.34522 0.86987 0.77109 0.77389 0.87491 1.21649 1.23170 1.19352 1.20906 0.84059 0.92200 0.99638 1.21969 0.95670 0.99490 0.96584 0.90568 1.21767 0.95777 1.00718 1.01702 0.91425 0.90174 0.91236 0.91545 0.91453 0.81987 0.83983 0.89603 0.90127 0.90311 0.76972 0.92155 0.91625 0.90862 0.95470 0.92795 0.95707 0.91418 0.92481 0.93359 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.28 37.15 0.38 -1.13 16 2 C 0.07 0.74 6.03 37.15 0.22 0.96 16 3 O -0.30 -4.19 9.57 -17.96 -0.17 -4.36 16 4 C 0.36 4.81 7.51 -16.61 -0.12 4.69 16 5 N -0.54 -6.23 9.21 -12.98 -0.12 -6.35 16 6 C 0.16 1.30 11.17 -17.49 -0.20 1.11 16 7 C -0.22 -1.69 9.79 -39.50 -0.39 -2.08 16 8 C 0.03 0.27 5.95 -103.93 -0.62 -0.35 16 9 C -0.13 -1.01 9.69 36.01 0.35 -0.66 16 10 C -0.20 -2.63 5.66 -104.69 -0.59 -3.23 16 11 C 0.58 8.92 5.38 -12.48 -0.07 8.85 16 12 O -0.53 -10.28 16.77 5.28 0.09 -10.19 16 13 N -0.71 -9.93 4.36 -54.81 -0.24 -10.17 16 14 C 0.16 2.59 1.88 -67.89 -0.13 2.46 16 15 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 16 C -0.14 -2.72 5.64 -26.83 -0.15 -2.87 16 17 C 0.13 2.95 4.17 -3.93 -0.02 2.93 16 18 N -0.61 -14.39 2.78 -172.58 -0.48 -14.87 16 19 C -0.26 -7.25 10.04 -15.06 -0.15 -7.40 16 20 H 0.09 2.51 8.05 -52.49 -0.42 2.09 16 21 C 0.02 0.71 5.23 -17.43 -0.09 0.61 16 22 N -0.91 -27.99 13.97 55.49 0.78 -27.21 16 23 Si 0.88 22.88 24.35 -169.99 -4.14 18.74 16 24 H -0.29 -7.35 6.70 56.52 0.38 -6.97 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 26 H -0.27 -6.88 6.48 56.52 0.37 -6.52 16 27 C 0.16 3.03 5.80 -3.71 -0.02 3.01 16 28 C -0.12 -1.80 2.46 -90.50 -0.22 -2.02 16 29 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 30 C -0.14 -1.69 9.02 37.16 0.34 -1.35 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 36 H 0.16 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.08 0.81 7.19 -51.93 -0.37 0.44 16 41 H 0.40 4.69 8.29 -40.82 -0.34 4.35 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.82 4.49 -51.93 -0.23 1.59 16 45 H 0.03 0.63 7.01 -51.93 -0.36 0.26 16 46 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 48 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.05 0.49 7.36 -51.93 -0.38 0.11 16 51 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -34.61 405.07 -8.11 -42.72 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.45 Total: 2.04 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.48 Total: 3.54 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.06 Total: -58.60 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.08 Total: -14.55 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.61 -8.11 -42.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942530273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.175 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds