Wall clock time and date at job start Wed Apr 1 2020 04:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47235 * 2 1 4 4 C 1.35424 * 117.00292 * 180.02562 * 3 2 1 5 5 N 1.32242 * 119.79710 * 0.27017 * 4 3 2 6 6 C 1.31881 * 121.79736 * 180.26684 * 5 4 3 7 7 C 1.38360 * 121.18371 * 359.74900 * 6 5 4 8 8 C 1.38332 * 119.45931 * 359.97397 * 7 6 5 9 9 C 1.50710 * 120.82497 * 179.97438 * 8 7 6 10 10 C 1.39985 * 118.35315 * 0.02562 * 8 7 6 11 11 C 1.47521 * 120.60136 * 179.97438 * 10 8 7 12 12 O 1.21599 * 119.99718 * 90.00003 * 11 10 8 13 13 N 1.34774 * 120.00393 * 270.00151 * 11 10 8 14 14 C 1.46497 * 120.00325 * 179.97438 * 13 11 10 15 15 H 1.09004 * 109.45716 * 324.97313 * 14 13 11 16 16 C 1.53041 * 109.46110 * 84.92836 * 14 13 11 17 17 C 1.52759 * 109.38448 * 181.26009 * 16 14 13 18 18 N 1.46931 * 109.00997 * 305.59177 * 17 16 14 19 19 C 1.36936 * 120.62927 * 233.58601 * 18 17 16 20 20 H 1.08002 * 120.00172 * 153.10341 * 19 18 17 21 21 C 1.38812 * 120.00088 * 333.10162 * 19 18 17 22 22 N 1.31611 * 120.00091 * 158.91661 * 21 19 18 23 23 Si 1.86798 * 119.99879 * 339.18673 * 21 19 18 24 24 H 1.48503 * 109.47513 * 95.07229 * 23 21 19 25 25 H 1.48502 * 109.47210 * 215.07047 * 23 21 19 26 26 H 1.48503 * 109.47342 * 335.07379 * 23 21 19 27 27 C 1.46922 * 118.73721 * 53.30446 * 18 17 16 28 28 C 1.53039 * 109.46133 * 205.00073 * 14 13 11 29 29 H 1.08998 * 109.52118 * 298.58154 * 28 14 13 30 30 C 1.53002 * 109.49729 * 58.65847 * 28 14 13 31 31 H 1.08997 * 109.47247 * 60.00048 * 1 2 3 32 32 H 1.09004 * 109.46899 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47409 * 299.99754 * 1 2 3 34 34 H 1.09003 * 109.46909 * 240.00083 * 2 1 3 35 35 H 1.08997 * 109.47247 * 119.99951 * 2 1 3 36 36 H 1.07996 * 119.41097 * 179.72814 * 6 5 4 37 37 H 1.08004 * 120.27093 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47099 * 270.02629 * 9 8 7 39 39 H 1.09001 * 109.46858 * 30.02858 * 9 8 7 40 40 H 1.08999 * 109.46877 * 150.02261 * 9 8 7 41 41 H 0.97006 * 119.99541 * 359.97438 * 13 11 10 42 42 H 1.08995 * 109.50199 * 301.34401 * 16 14 13 43 43 H 1.09004 * 109.49320 * 61.40046 * 16 14 13 44 44 H 1.08999 * 109.51124 * 185.70870 * 17 16 14 45 45 H 1.08996 * 109.43310 * 65.42539 * 17 16 14 46 46 H 0.97001 * 120.00195 * 180.02562 * 22 21 19 47 47 H 1.09009 * 109.58554 * 66.43557 * 27 18 17 48 48 H 1.08996 * 109.58909 * 186.71570 * 27 18 17 49 49 H 1.08999 * 109.46585 * 179.83610 * 30 28 14 50 50 H 1.08993 * 109.47121 * 299.83820 * 30 28 14 51 51 H 1.09006 * 109.46806 * 59.84327 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3489 1.5248 -0.0005 5 7 4.1508 0.4732 -0.0064 6 6 5.4634 0.6003 -0.0020 7 6 6.0624 1.8475 0.0040 8 6 5.2712 2.9822 0.0047 9 6 5.8912 4.3559 0.0117 10 6 3.8805 2.8229 -0.0001 11 6 2.9899 3.9990 0.0010 12 8 2.6262 4.4871 -1.0516 13 7 2.5795 4.5325 1.1687 14 6 1.6956 5.7007 1.1697 15 1 1.9496 6.3491 0.3311 16 6 0.2421 5.2405 1.0359 17 6 -0.6755 6.4614 1.0057 18 7 -0.4108 7.2886 2.1908 19 6 -1.4306 7.6546 3.0281 20 1 -1.2270 7.8631 4.0681 21 6 -2.7261 7.7576 2.5403 22 7 -3.7477 7.6950 3.3677 23 14 -3.0196 7.9776 0.7087 24 1 -3.2702 6.6534 0.0849 25 1 -4.1991 8.8550 0.4983 26 1 -1.8230 8.5992 0.0867 27 6 0.9699 7.7103 2.4638 28 6 1.8700 6.4709 2.4807 29 1 1.5926 5.8312 3.3185 30 6 3.3304 6.9021 2.6292 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 6.0819 -0.2850 -0.0026 37 1 7.1390 1.9344 0.0072 38 1 6.0371 4.6834 1.0410 39 1 6.8536 4.3227 -0.4990 40 1 5.2312 5.0549 -0.5020 41 1 2.8694 4.1428 2.0084 42 1 0.1239 4.6721 0.1135 43 1 -0.0201 4.6117 1.8868 44 1 -1.7156 6.1353 1.0126 45 1 -0.4782 7.0411 0.1040 46 1 -4.6530 7.7667 3.0268 47 1 1.3042 8.3940 1.6833 48 1 1.0148 8.2103 3.4313 49 1 3.4535 7.4531 3.5616 50 1 3.9703 6.0199 2.6412 51 1 3.6077 7.5408 1.7905 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942530273.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:10 Heat of formation + Delta-G solvation = -47.667811 kcal Electronic energy + Delta-G solvation = -32023.625223 eV Core-core repulsion = 27922.711412 eV Total energy + Delta-G solvation = -4100.913811 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.10122 -40.83940 -39.42905 -39.06800 -36.30816 -34.97415 -34.22033 -33.40689 -33.18312 -31.98543 -30.94051 -29.07396 -27.83682 -26.98798 -25.24347 -24.59401 -23.72181 -23.08917 -22.66660 -21.63481 -21.07714 -19.14752 -18.95418 -18.58775 -18.11101 -17.76375 -17.35122 -16.89982 -16.21107 -16.13118 -15.75233 -15.50619 -15.20536 -15.13695 -15.09143 -14.77136 -14.72658 -14.34881 -14.13961 -14.06459 -13.88978 -13.64264 -13.58110 -13.45415 -13.32728 -13.21952 -12.89367 -12.83644 -12.71226 -12.54323 -12.24700 -12.14170 -11.96151 -11.79735 -11.75955 -11.50991 -11.46756 -11.27389 -10.79919 -10.65602 -10.54307 -10.10120 -9.59131 -8.99445 -8.19317 -5.49870 -0.14055 0.18139 1.27322 1.37269 1.43986 1.46210 1.90453 2.08329 2.38718 2.61677 3.00155 3.22975 3.31437 3.60639 3.68232 3.74181 3.85509 3.87682 4.00288 4.07381 4.08793 4.10728 4.19014 4.35473 4.37695 4.43737 4.55599 4.58648 4.59389 4.68952 4.71263 4.75920 4.79372 4.80777 4.85007 4.88087 4.88383 5.04788 5.07225 5.10741 5.13782 5.15278 5.22531 5.30593 5.42860 5.45992 5.51764 5.83686 6.10671 6.15050 6.45017 6.72732 6.87348 7.12672 7.58789 8.00387 9.00211 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003343 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.127600 B = 8373.099305 C = 9757.416862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.326 6.326 4 C 0.338 3.662 5 N -0.557 5.557 6 C 0.156 3.844 7 C -0.201 4.201 8 C 0.024 3.976 9 C -0.123 4.123 10 C -0.229 4.229 11 C 0.584 3.416 12 O -0.577 6.577 13 N -0.696 5.696 14 C 0.168 3.832 15 H 0.071 0.929 16 C -0.130 4.130 17 C 0.129 3.871 18 N -0.618 5.618 19 C -0.244 4.244 20 H 0.063 0.937 21 C -0.030 4.030 22 N -0.953 5.953 23 Si 0.934 3.066 24 H -0.285 1.285 25 H -0.307 1.307 26 H -0.263 1.263 27 C 0.152 3.848 28 C -0.103 4.103 29 H 0.074 0.926 30 C -0.133 4.133 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.203 0.797 37 H 0.184 0.816 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.051 0.949 41 H 0.410 0.590 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.034 0.966 48 H 0.069 0.931 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.922 -16.135 -5.057 30.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.233 6.233 4 C 0.160 3.840 5 N -0.281 5.281 6 C 0.001 3.999 7 C -0.221 4.221 8 C 0.017 3.983 9 C -0.179 4.179 10 C -0.235 4.235 11 C 0.370 3.630 12 O -0.457 6.457 13 N -0.345 5.345 14 C 0.063 3.937 15 H 0.089 0.911 16 C -0.171 4.171 17 C 0.003 3.997 18 N -0.342 5.342 19 C -0.373 4.373 20 H 0.080 0.920 21 C -0.225 4.225 22 N -0.599 5.599 23 Si 0.764 3.236 24 H -0.212 1.212 25 H -0.236 1.236 26 H -0.187 1.187 27 C 0.027 3.973 28 C -0.124 4.124 29 H 0.092 0.908 30 C -0.191 4.191 31 H 0.073 0.927 32 H 0.125 0.875 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.219 0.781 37 H 0.201 0.799 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.070 0.930 41 H 0.246 0.754 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 24.878 -16.386 -5.773 30.344 hybrid contribution -0.943 0.612 -0.525 1.241 sum 23.935 -15.773 -6.298 29.348 Atomic orbital electron populations 1.21865 0.92151 1.04308 1.02675 1.22794 0.95505 0.79570 1.02842 1.86253 1.17278 1.32799 1.86968 1.19839 0.84401 0.88961 0.90827 1.67478 1.07981 1.31591 1.21089 1.23343 0.88325 0.99411 0.88850 1.22237 1.03139 0.91100 1.05627 1.20523 0.89251 0.98877 0.89694 1.21016 1.01944 0.90261 1.04724 1.19768 0.95253 0.91247 1.17223 1.18052 0.79046 0.82298 0.83617 1.90781 1.58696 1.63260 1.32925 1.45973 1.48893 1.31294 1.08351 1.20748 0.87701 0.86223 0.98982 0.91077 1.22149 0.95982 0.97930 1.01014 1.21147 0.97704 0.91498 0.89322 1.44517 1.04541 1.57690 1.27492 1.18906 0.87032 1.40189 0.91200 0.91966 1.25777 0.95572 1.00551 1.00563 1.69943 0.98633 1.55142 1.36185 0.86088 0.76800 0.77255 0.83421 1.21230 1.23612 1.18704 1.21157 0.82085 0.94153 0.99937 1.21783 0.97466 0.97462 0.95639 0.90796 1.21712 0.92915 1.01935 1.02542 0.92713 0.87460 0.92419 0.91255 0.90685 0.78084 0.79865 0.87806 0.87430 0.93022 0.75376 0.92911 0.92079 0.93352 0.95581 0.92958 0.94806 0.91212 0.91118 0.91069 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.07 1.46 6.03 71.98 0.43 1.89 16 3 O -0.33 -9.40 9.57 -87.20 -0.83 -10.23 16 4 C 0.34 8.82 7.51 85.13 0.64 9.46 16 5 N -0.56 -11.63 9.21 -307.99 -2.84 -14.46 16 6 C 0.16 2.00 11.17 84.71 0.95 2.95 16 7 C -0.20 -2.21 9.79 22.32 0.22 -1.99 16 8 C 0.02 0.42 5.95 -19.42 -0.12 0.30 16 9 C -0.12 -1.59 9.69 71.24 0.69 -0.90 16 10 C -0.23 -5.76 5.66 -19.91 -0.11 -5.87 16 11 C 0.58 17.91 5.38 86.69 0.47 18.37 16 12 O -0.58 -22.86 16.77 -4.03 -0.07 -22.93 16 13 N -0.70 -18.86 4.36 -445.58 -1.94 -20.81 16 14 C 0.17 5.43 1.88 45.02 0.08 5.51 16 15 H 0.07 2.54 7.58 -2.38 -0.02 2.52 16 16 C -0.13 -5.10 5.64 30.53 0.17 -4.93 16 17 C 0.13 5.94 4.17 86.22 0.36 6.30 16 18 N -0.62 -29.53 2.78 -699.93 -1.95 -31.48 16 19 C -0.24 -13.88 10.04 84.03 0.84 -13.03 16 20 H 0.06 3.78 8.05 -2.91 -0.02 3.76 16 21 C -0.03 -1.76 5.23 84.86 0.44 -1.32 16 22 N -0.95 -60.56 13.97 21.65 0.30 -60.26 16 23 Si 0.93 48.59 24.35 68.60 1.67 50.26 16 24 H -0.28 -14.47 6.70 99.48 0.67 -13.80 16 25 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 26 H -0.26 -13.21 6.48 99.48 0.64 -12.56 16 27 C 0.15 5.67 5.80 86.36 0.50 6.17 16 28 C -0.10 -3.02 2.46 -10.72 -0.03 -3.04 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 C -0.13 -2.76 9.02 71.98 0.65 -2.11 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 35 H 0.07 1.46 8.11 -2.39 -0.02 1.44 16 36 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 37 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.79 8.10 -2.39 -0.02 0.78 16 40 H 0.05 0.98 7.19 -2.39 -0.02 0.96 16 41 H 0.41 9.02 8.29 -92.70 -0.77 8.25 16 42 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.05 2.46 4.49 -2.39 -0.01 2.45 16 45 H 0.03 1.21 7.01 -2.39 -0.02 1.20 16 46 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 47 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.17 7.36 -2.39 -0.02 1.16 16 51 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -79.44 405.07 1.33 -78.10 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.06 Total: 16.30 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.93 Total: 15.51 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -6.43 Total: -127.02 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.90 Total: -33.16 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 1.67 Total: 50.26 kcal Total: -79.44 1.33 -78.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942530273.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.435 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds