Wall clock time and date at job start Wed Apr 1 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.46964 * 2 1 4 4 C 1.35433 * 116.99803 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80009 * 0.31225 * 4 3 2 6 6 C 1.31883 * 121.79875 * 180.31423 * 5 4 3 7 7 C 1.50697 * 119.40595 * 179.67868 * 6 5 4 8 8 C 1.38358 * 121.18730 * 359.66035 * 6 5 4 9 9 C 1.38338 * 119.45416 * 0.02562 * 8 6 5 10 10 C 1.39990 * 118.35425 * 0.02562 * 9 8 6 11 11 C 1.47520 * 120.60002 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00066 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99714 * 359.97438 * 11 10 9 14 14 C 1.46506 * 119.99721 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.45941 * 34.97829 * 14 13 11 16 16 C 1.53036 * 109.45960 * 275.00135 * 14 13 11 17 17 C 1.53187 * 109.31796 * 301.35976 * 16 14 13 18 18 N 1.46929 * 108.77314 * 305.36619 * 17 16 14 19 19 C 1.36938 * 120.63096 * 233.58114 * 18 17 16 20 20 H 1.07996 * 120.00040 * 152.45657 * 19 18 17 21 21 C 1.38815 * 119.99900 * 332.46589 * 19 18 17 22 22 N 1.31625 * 120.00044 * 342.37252 * 21 19 18 23 23 Si 1.86799 * 119.99992 * 162.65255 * 21 19 18 24 24 H 1.48494 * 109.47281 * 59.99509 * 23 21 19 25 25 H 1.48501 * 109.47279 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46851 * 299.99688 * 23 21 19 27 27 C 1.46920 * 118.73799 * 53.86216 * 18 17 16 28 28 C 1.53041 * 109.44576 * 154.94528 * 14 13 11 29 29 H 1.09004 * 109.49307 * 178.63822 * 28 14 13 30 30 C 1.53004 * 109.49597 * 298.69470 * 28 14 13 31 31 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47400 * 300.00405 * 1 2 3 33 33 H 1.09006 * 109.47035 * 60.00003 * 1 2 3 34 34 H 1.08999 * 109.46778 * 240.00018 * 2 1 3 35 35 H 1.08997 * 109.47031 * 120.00200 * 2 1 3 36 36 H 1.09002 * 109.47041 * 269.98029 * 7 6 5 37 37 H 1.09000 * 109.47560 * 29.97621 * 7 6 5 38 38 H 1.08997 * 109.47127 * 149.98130 * 7 6 5 39 39 H 1.07993 * 120.27351 * 180.02562 * 8 6 5 40 40 H 1.08004 * 120.82167 * 179.97438 * 9 8 6 41 41 H 0.96994 * 120.00331 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.49681 * 181.40332 * 16 14 13 43 43 H 1.09007 * 109.52459 * 61.33229 * 16 14 13 44 44 H 1.08998 * 109.58921 * 185.57581 * 17 16 14 45 45 H 1.08999 * 109.70471 * 65.22142 * 17 16 14 46 46 H 0.96995 * 119.99676 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.59297 * 65.92481 * 27 18 17 48 48 H 1.09004 * 109.58520 * 186.35376 * 27 18 17 49 49 H 1.09002 * 109.47122 * 60.00181 * 30 28 14 50 50 H 1.08999 * 109.47382 * 180.02562 * 30 28 14 51 51 H 1.09003 * 109.47321 * 300.00071 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6003 -0.0019 7 6 6.3264 -0.6352 -0.0027 8 6 6.0626 1.8474 0.0041 9 6 5.2713 2.9821 0.0050 10 6 3.8805 2.8229 0.0003 11 6 2.9900 3.9990 0.0005 12 8 1.7835 3.8480 -0.0031 13 7 3.5138 5.2408 0.0057 14 6 2.6294 6.4088 0.0053 15 1 1.7366 6.1884 0.5904 16 6 2.2269 6.7430 -1.4329 17 6 3.4861 7.0182 -2.2606 18 7 4.2702 8.0670 -1.5942 19 6 4.6551 9.1902 -2.2765 20 1 4.8174 10.1160 -1.7446 21 6 4.8365 9.1388 -3.6518 22 7 4.9831 7.9773 -4.2533 23 14 4.8803 10.7186 -4.6477 24 1 5.9963 11.5739 -4.1703 25 1 5.0848 10.3938 -6.0823 26 1 3.5951 11.4438 -4.4823 27 6 4.6387 7.8849 -0.1837 28 6 3.3617 7.6026 0.6223 29 1 2.7129 8.4782 0.6003 30 6 3.7348 7.2797 2.0706 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 6.5309 -0.9362 1.0247 37 1 5.8067 -1.4411 -0.5208 38 1 7.2658 -0.4218 -0.5126 39 1 7.1390 1.9343 0.0080 40 1 5.7156 3.9666 0.0100 41 1 4.4762 5.3612 0.0089 42 1 1.5890 7.6269 -1.4361 43 1 1.6846 5.9015 -1.8643 44 1 3.2018 7.3527 -3.2583 45 1 4.0822 6.1088 -2.3363 46 1 5.1102 7.9415 -5.2143 47 1 5.3259 7.0439 -0.0911 48 1 5.1150 8.7916 0.1895 49 1 4.3844 6.4047 2.0920 50 1 4.2560 8.1304 2.5098 51 1 2.8295 7.0743 2.6419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943778762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:31 Heat of formation + Delta-G solvation = -23.283732 kcal Electronic energy + Delta-G solvation = -31878.603768 eV Core-core repulsion = 27778.747330 eV Total energy + Delta-G solvation = -4099.856438 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.98996 -39.47700 -38.21007 -37.42152 -34.23509 -33.44360 -32.54459 -32.07593 -31.08132 -31.00249 -29.96536 -27.97794 -25.85761 -25.24865 -23.96330 -23.30795 -22.38060 -22.02006 -21.08133 -20.57988 -18.60115 -18.38743 -17.59005 -16.81209 -16.52116 -16.38936 -15.20069 -14.91644 -14.77701 -14.66681 -14.40719 -14.19776 -14.10086 -13.94964 -13.69409 -13.38853 -13.17528 -13.05748 -12.83285 -12.72850 -12.59053 -12.48044 -12.34991 -12.10043 -11.98759 -11.55585 -11.46728 -11.35092 -11.06199 -10.79354 -10.77832 -10.68033 -10.36452 -10.21622 -10.05129 -10.02855 -9.95917 -9.71968 -9.43766 -9.36496 -8.61744 -8.46901 -8.37759 -6.68889 -5.79881 -3.22690 0.63482 1.16995 2.93775 3.06424 3.37555 3.43986 3.45086 3.48116 3.85539 3.99737 4.48247 4.51847 4.76843 4.86542 4.93009 4.96864 5.06104 5.16319 5.26080 5.28954 5.29977 5.32457 5.33925 5.38573 5.50683 5.57902 5.63634 5.70940 5.75951 5.76508 5.91300 5.96059 5.99786 6.01500 6.09901 6.18148 6.27725 6.29326 6.39193 6.46804 6.67428 6.67902 6.79403 6.90258 7.05743 7.22602 7.38463 7.66322 7.68086 7.78630 7.93149 8.43171 8.61608 9.19471 9.82993 10.39034 11.27836 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.002984 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.877311 B = 9382.285125 C = 9840.435560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.267 6.267 4 C 0.377 3.623 5 N -0.549 5.549 6 C 0.187 3.813 7 C -0.107 4.107 8 C -0.219 4.219 9 C -0.003 4.003 10 C -0.210 4.210 11 C 0.563 3.437 12 O -0.525 6.525 13 N -0.708 5.708 14 C 0.163 3.837 15 H 0.074 0.926 16 C -0.154 4.154 17 C 0.175 3.825 18 N -0.591 5.591 19 C -0.255 4.255 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.153 3.847 28 C -0.119 4.119 29 H 0.082 0.918 30 C -0.141 4.141 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.397 0.603 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.012 0.988 48 H 0.057 0.943 49 H 0.049 0.951 50 H 0.053 0.947 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -15.979 11.553 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.172 6.172 4 C 0.197 3.803 5 N -0.274 5.274 6 C 0.050 3.950 7 C -0.164 4.164 8 C -0.239 4.239 9 C -0.029 4.029 10 C -0.216 4.216 11 C 0.348 3.652 12 O -0.402 6.402 13 N -0.361 5.361 14 C 0.059 3.941 15 H 0.092 0.908 16 C -0.194 4.194 17 C 0.049 3.951 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.210 1.210 27 C 0.026 3.974 28 C -0.140 4.140 29 H 0.100 0.900 30 C -0.199 4.199 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.233 0.767 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.029 0.971 48 H 0.075 0.925 49 H 0.068 0.932 50 H 0.072 0.928 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.224 -16.720 11.341 20.241 hybrid contribution 1.004 1.448 -0.692 1.893 sum -0.219 -15.272 10.649 18.620 Atomic orbital electron populations 1.21781 0.92903 1.02368 1.03793 1.22654 0.95150 0.81500 1.02088 1.86552 1.15510 1.29512 1.85605 1.19739 0.84493 0.88328 0.87760 1.67262 1.05975 1.32563 1.21636 1.21133 0.88804 0.95284 0.89829 1.20799 0.98064 0.94170 1.03369 1.21721 1.01605 0.92175 1.08435 1.21692 0.91321 1.00008 0.89854 1.20110 0.94267 0.92611 1.14597 1.17683 0.87684 0.82601 0.77187 1.90791 1.14133 1.85870 1.49413 1.45985 1.10582 1.05113 1.74425 1.20875 0.92239 0.83634 0.97352 0.90835 1.22560 1.00934 1.00374 0.95560 1.20714 0.87962 0.90353 0.96079 1.44080 1.59965 1.21090 1.06211 1.19123 1.41341 0.87850 0.90135 0.91735 1.25022 1.00044 0.96484 0.97938 1.70030 1.52004 1.23115 1.09314 0.86386 0.78059 0.83197 0.79199 1.20937 1.21678 1.21030 1.20982 0.92099 0.98211 0.86116 1.22037 1.00277 0.97427 0.94274 0.89953 1.21765 1.00923 1.01017 0.96230 0.90601 0.91554 0.91424 0.91750 0.91860 0.89948 0.90294 0.90096 0.83951 0.83675 0.76681 0.91814 0.92658 0.89649 0.96441 0.93606 0.97076 0.92482 0.93161 0.92776 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.74 6.03 37.16 0.22 0.96 16 3 O -0.27 -4.31 8.22 -39.76 -0.33 -4.64 16 4 C 0.38 5.89 7.51 -16.61 -0.12 5.77 16 5 N -0.55 -7.43 9.11 -9.21 -0.08 -7.51 16 6 C 0.19 2.07 6.78 -82.53 -0.56 1.51 16 7 C -0.11 -0.76 10.16 36.00 0.37 -0.40 16 8 C -0.22 -2.32 9.71 -39.50 -0.38 -2.70 16 9 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 10 C -0.21 -3.26 5.90 -104.69 -0.62 -3.88 16 11 C 0.56 9.99 7.74 -12.48 -0.10 9.89 16 12 O -0.52 -10.87 14.85 -16.48 -0.24 -11.11 16 13 N -0.71 -11.74 3.55 -54.81 -0.19 -11.93 16 14 C 0.16 2.87 2.22 -67.89 -0.15 2.72 16 15 H 0.07 1.32 7.57 -51.93 -0.39 0.93 16 16 C -0.15 -3.12 5.77 -26.62 -0.15 -3.28 16 17 C 0.17 4.14 5.05 -3.71 -0.02 4.12 16 18 N -0.59 -14.16 2.99 -172.06 -0.51 -14.68 16 19 C -0.25 -6.80 9.59 -15.06 -0.14 -6.95 16 20 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 21 C 0.00 0.11 4.90 -17.43 -0.09 0.02 16 22 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 23 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.15 2.95 5.53 -3.49 -0.02 2.93 16 28 C -0.12 -1.96 2.69 -90.27 -0.24 -2.20 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 C -0.14 -1.88 9.05 37.16 0.34 -1.55 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.44 8.07 -51.93 -0.42 0.02 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.15 1.58 6.52 -52.48 -0.34 1.24 16 41 H 0.40 6.10 4.82 -40.82 -0.20 5.91 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 44 H 0.09 2.31 6.03 -51.93 -0.31 2.00 16 45 H 0.02 0.43 7.74 -51.93 -0.40 0.03 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.01 0.21 6.63 -51.93 -0.34 -0.13 16 48 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 49 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -32.50 404.11 -9.60 -42.11 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.26 Total: 4.95 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -1.66 Total: 5.43 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.17 Total: -59.27 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.57 Total: -15.75 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.50 -9.60 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943778762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.822 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds