Wall clock time and date at job start Wed Apr 1 2020 04:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.46964 * 2 1 4 4 C 1.35433 * 116.99803 * 180.02562 * 3 2 1 5 5 N 1.32235 * 119.80009 * 0.31225 * 4 3 2 6 6 C 1.31883 * 121.79875 * 180.31423 * 5 4 3 7 7 C 1.50697 * 119.40595 * 179.67868 * 6 5 4 8 8 C 1.38358 * 121.18730 * 359.66035 * 6 5 4 9 9 C 1.38338 * 119.45416 * 0.02562 * 8 6 5 10 10 C 1.39990 * 118.35425 * 0.02562 * 9 8 6 11 11 C 1.47520 * 120.60002 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00066 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99714 * 359.97438 * 11 10 9 14 14 C 1.46506 * 119.99721 * 179.97438 * 13 11 10 15 15 H 1.08995 * 109.45941 * 34.97829 * 14 13 11 16 16 C 1.53036 * 109.45960 * 275.00135 * 14 13 11 17 17 C 1.53187 * 109.31796 * 301.35976 * 16 14 13 18 18 N 1.46929 * 108.77314 * 305.36619 * 17 16 14 19 19 C 1.36938 * 120.63096 * 233.58114 * 18 17 16 20 20 H 1.07996 * 120.00040 * 152.45657 * 19 18 17 21 21 C 1.38815 * 119.99900 * 332.46589 * 19 18 17 22 22 N 1.31625 * 120.00044 * 342.37252 * 21 19 18 23 23 Si 1.86799 * 119.99992 * 162.65255 * 21 19 18 24 24 H 1.48494 * 109.47281 * 59.99509 * 23 21 19 25 25 H 1.48501 * 109.47279 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46851 * 299.99688 * 23 21 19 27 27 C 1.46920 * 118.73799 * 53.86216 * 18 17 16 28 28 C 1.53041 * 109.44576 * 154.94528 * 14 13 11 29 29 H 1.09004 * 109.49307 * 178.63822 * 28 14 13 30 30 C 1.53004 * 109.49597 * 298.69470 * 28 14 13 31 31 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47400 * 300.00405 * 1 2 3 33 33 H 1.09006 * 109.47035 * 60.00003 * 1 2 3 34 34 H 1.08999 * 109.46778 * 240.00018 * 2 1 3 35 35 H 1.08997 * 109.47031 * 120.00200 * 2 1 3 36 36 H 1.09002 * 109.47041 * 269.98029 * 7 6 5 37 37 H 1.09000 * 109.47560 * 29.97621 * 7 6 5 38 38 H 1.08997 * 109.47127 * 149.98130 * 7 6 5 39 39 H 1.07993 * 120.27351 * 180.02562 * 8 6 5 40 40 H 1.08004 * 120.82167 * 179.97438 * 9 8 6 41 41 H 0.96994 * 120.00331 * 0.02562 * 13 11 10 42 42 H 1.09004 * 109.49681 * 181.40332 * 16 14 13 43 43 H 1.09007 * 109.52459 * 61.33229 * 16 14 13 44 44 H 1.08998 * 109.58921 * 185.57581 * 17 16 14 45 45 H 1.08999 * 109.70471 * 65.22142 * 17 16 14 46 46 H 0.96995 * 119.99676 * 180.02562 * 22 21 19 47 47 H 1.09000 * 109.59297 * 65.92481 * 27 18 17 48 48 H 1.09004 * 109.58520 * 186.35376 * 27 18 17 49 49 H 1.09002 * 109.47122 * 60.00181 * 30 28 14 50 50 H 1.08999 * 109.47382 * 180.02562 * 30 28 14 51 51 H 1.09003 * 109.47321 * 300.00071 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4732 -0.0073 6 6 5.4635 0.6003 -0.0019 7 6 6.3264 -0.6352 -0.0027 8 6 6.0626 1.8474 0.0041 9 6 5.2713 2.9821 0.0050 10 6 3.8805 2.8229 0.0003 11 6 2.9900 3.9990 0.0005 12 8 1.7835 3.8480 -0.0031 13 7 3.5138 5.2408 0.0057 14 6 2.6294 6.4088 0.0053 15 1 1.7366 6.1884 0.5904 16 6 2.2269 6.7430 -1.4329 17 6 3.4861 7.0182 -2.2606 18 7 4.2702 8.0670 -1.5942 19 6 4.6551 9.1902 -2.2765 20 1 4.8174 10.1160 -1.7446 21 6 4.8365 9.1388 -3.6518 22 7 4.9831 7.9773 -4.2533 23 14 4.8803 10.7186 -4.6477 24 1 5.9963 11.5739 -4.1703 25 1 5.0848 10.3938 -6.0823 26 1 3.5951 11.4438 -4.4823 27 6 4.6387 7.8849 -0.1837 28 6 3.3617 7.6026 0.6223 29 1 2.7129 8.4782 0.6003 30 6 3.7348 7.2797 2.0706 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 6.5309 -0.9362 1.0247 37 1 5.8067 -1.4411 -0.5208 38 1 7.2658 -0.4218 -0.5126 39 1 7.1390 1.9343 0.0080 40 1 5.7156 3.9666 0.0100 41 1 4.4762 5.3612 0.0089 42 1 1.5890 7.6269 -1.4361 43 1 1.6846 5.9015 -1.8643 44 1 3.2018 7.3527 -3.2583 45 1 4.0822 6.1088 -2.3363 46 1 5.1102 7.9415 -5.2143 47 1 5.3259 7.0439 -0.0911 48 1 5.1150 8.7916 0.1895 49 1 4.3844 6.4047 2.0920 50 1 4.2560 8.1304 2.5098 51 1 2.8295 7.0743 2.6419 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943778762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:30 Heat of formation + Delta-G solvation = -42.947561 kcal Electronic energy + Delta-G solvation = -31879.456456 eV Core-core repulsion = 27778.747330 eV Total energy + Delta-G solvation = -4100.709126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06397 -40.85816 -39.21741 -38.94859 -35.97620 -34.58954 -33.69359 -33.20160 -32.85868 -31.90176 -31.59760 -28.90377 -27.38118 -26.98278 -24.98448 -24.37918 -23.63276 -23.33464 -22.72254 -21.82272 -20.10660 -19.51194 -18.87302 -18.48130 -17.71976 -17.41593 -16.85117 -16.46589 -16.16216 -15.80586 -15.55510 -15.48306 -15.41860 -15.19399 -15.05121 -14.77547 -14.52510 -14.23531 -14.12358 -13.93078 -13.54988 -13.49323 -13.30743 -13.15539 -13.02626 -12.95223 -12.82797 -12.68600 -12.51690 -12.46551 -12.35105 -12.22041 -11.94824 -11.69234 -11.66946 -11.46935 -11.16796 -11.11475 -10.96764 -10.62025 -10.50790 -10.00327 -9.46155 -8.65941 -7.85525 -5.30194 -0.38220 0.20339 1.47281 1.50463 1.56219 1.86461 1.96725 2.18766 2.52393 2.75125 3.10133 3.29339 3.63406 3.67479 3.73534 3.81902 3.88559 4.03727 4.08516 4.11184 4.13437 4.20853 4.31485 4.39825 4.42800 4.60081 4.64771 4.69034 4.78303 4.79120 4.81367 4.82802 4.89855 4.91741 4.97598 5.01050 5.02791 5.10566 5.14691 5.18383 5.19467 5.31374 5.43111 5.47170 5.51594 5.60010 5.66494 5.74330 6.22606 6.39595 6.55309 6.73736 7.15586 7.26829 7.87430 8.38904 9.19841 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.002984 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.877311 B = 9382.285125 C = 9840.435560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.297 6.297 4 C 0.358 3.642 5 N -0.557 5.557 6 C 0.185 3.815 7 C -0.104 4.104 8 C -0.210 4.210 9 C -0.003 4.003 10 C -0.241 4.241 11 C 0.561 3.439 12 O -0.563 6.563 13 N -0.701 5.701 14 C 0.169 3.831 15 H 0.074 0.926 16 C -0.143 4.143 17 C 0.190 3.810 18 N -0.606 5.606 19 C -0.260 4.260 20 H 0.070 0.930 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.282 1.282 27 C 0.150 3.850 28 C -0.106 4.106 29 H 0.078 0.922 30 C -0.133 4.133 31 H 0.107 0.893 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.181 0.819 40 H 0.159 0.841 41 H 0.403 0.597 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.046 0.954 45 H 0.000 1.000 46 H 0.248 0.752 47 H 0.024 0.976 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.085 -16.602 13.322 21.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.017 4.017 3 O -0.203 6.203 4 C 0.179 3.821 5 N -0.283 5.283 6 C 0.047 3.953 7 C -0.161 4.161 8 C -0.230 4.230 9 C -0.029 4.029 10 C -0.247 4.247 11 C 0.349 3.651 12 O -0.443 6.443 13 N -0.353 5.353 14 C 0.065 3.935 15 H 0.092 0.908 16 C -0.183 4.183 17 C 0.064 3.936 18 N -0.329 5.329 19 C -0.391 4.391 20 H 0.087 0.913 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.208 1.208 27 C 0.025 3.975 28 C -0.127 4.127 29 H 0.097 0.903 30 C -0.191 4.191 31 H 0.126 0.874 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.198 0.802 40 H 0.176 0.824 41 H 0.241 0.759 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.018 0.982 46 H 0.057 0.943 47 H 0.042 0.958 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.639 -17.335 13.151 21.768 hybrid contribution 0.499 1.543 -1.218 2.028 sum 1.139 -15.792 11.933 19.826 Atomic orbital electron populations 1.21805 0.91642 1.04093 1.02764 1.22863 0.96157 0.80236 1.02466 1.86518 1.16293 1.31612 1.85827 1.19947 0.84681 0.88947 0.88569 1.67358 1.07067 1.31779 1.22102 1.21958 0.88360 0.97277 0.87701 1.20945 0.98126 0.92159 1.04837 1.22154 1.03268 0.91123 1.06438 1.21923 0.90189 1.01541 0.89245 1.20052 0.95296 0.91707 1.17689 1.18078 0.87573 0.83336 0.76119 1.90756 1.15843 1.86439 1.51293 1.45865 1.10700 1.04621 1.74120 1.20746 0.92871 0.84648 0.95257 0.90785 1.22393 0.99098 0.99780 0.97059 1.20365 0.88936 0.89424 0.94884 1.44265 1.60286 1.20452 1.07909 1.19470 1.40042 0.88934 0.90616 0.91266 1.25733 1.00644 0.99053 0.99033 1.70181 1.53731 1.24968 1.08917 0.85415 0.78168 0.80009 0.77292 1.19857 1.22413 1.20825 1.21173 0.93696 0.98953 0.83698 1.21886 0.98417 0.96500 0.95856 0.90335 1.21696 1.01708 1.02075 0.93617 0.87440 0.92222 0.92723 0.91623 0.91052 0.88084 0.90392 0.87621 0.80206 0.82358 0.75897 0.91950 0.93908 0.93576 0.98187 0.94347 0.95800 0.91989 0.92386 0.91055 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 10.28 71.98 0.74 -2.20 16 2 C 0.06 1.40 6.03 71.98 0.43 1.84 16 3 O -0.30 -9.98 8.22 -66.48 -0.55 -10.53 16 4 C 0.36 11.37 7.51 85.13 0.64 12.01 16 5 N -0.56 -14.65 9.11 -296.05 -2.70 -17.34 16 6 C 0.18 3.66 6.78 42.58 0.29 3.95 16 7 C -0.10 -1.12 10.16 71.23 0.72 -0.40 16 8 C -0.21 -3.85 9.71 22.32 0.22 -3.63 16 9 C 0.00 -0.08 9.64 22.72 0.22 0.14 16 10 C -0.24 -7.56 5.90 -19.91 -0.12 -7.68 16 11 C 0.56 20.39 7.74 86.69 0.67 21.06 16 12 O -0.56 -24.29 14.85 16.82 0.25 -24.04 16 13 N -0.70 -23.16 3.55 -445.59 -1.58 -24.75 16 14 C 0.17 5.94 2.22 45.02 0.10 6.04 16 15 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 16 C -0.14 -5.97 5.77 30.67 0.18 -5.80 16 17 C 0.19 9.29 5.05 86.36 0.44 9.73 16 18 N -0.61 -29.14 2.99 -698.28 -2.09 -31.23 16 19 C -0.26 -13.91 9.59 84.03 0.81 -13.10 16 20 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 21 C -0.05 -2.71 4.90 84.86 0.42 -2.29 16 22 N -0.93 -54.76 11.19 21.65 0.24 -54.52 16 23 Si 0.96 44.61 29.59 68.60 2.03 46.64 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 C 0.15 5.59 5.53 86.51 0.48 6.07 16 28 C -0.11 -3.32 2.69 -10.57 -0.03 -3.35 16 29 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 30 C -0.13 -3.17 9.05 71.98 0.65 -2.52 16 31 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 36 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.66 8.07 -2.39 -0.02 0.64 16 39 H 0.18 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.16 3.17 6.52 -2.91 -0.02 3.15 16 41 H 0.40 12.08 4.82 -92.71 -0.45 11.64 16 42 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.05 2.61 6.03 -2.39 -0.01 2.60 16 45 H 0.00 0.00 7.74 -2.39 -0.02 -0.01 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.02 0.85 6.63 -2.39 -0.02 0.83 16 48 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 49 H 0.06 1.30 7.54 -2.39 -0.02 1.29 16 50 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -73.47 404.11 2.94 -70.53 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.48 Total: 25.38 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 6.85 Total: 19.87 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -6.13 Total: -127.84 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.30 Total: -34.57 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -73.47 2.94 -70.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943778762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.583 kcal (2) G-P(sol) polarization free energy of solvation -73.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds