Wall clock time and date at job start Wed Apr 1 2020 04:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47589 * 2 1 4 4 C 1.35673 * 117.00221 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.68657 * 180.02562 * 4 3 2 6 6 C 1.38373 * 119.11205 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48631 * 0.27598 * 6 5 4 8 8 C 1.38048 * 119.28605 * 359.45306 * 7 6 5 9 9 C 1.50702 * 119.57782 * 180.27800 * 8 7 6 10 10 C 1.50699 * 109.47196 * 125.28039 * 9 8 7 11 11 O 1.21280 * 119.99846 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99824 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.45965 * 34.96919 * 13 12 10 15 15 C 1.53040 * 109.45476 * 274.99603 * 13 12 10 16 16 C 1.53197 * 109.31023 * 178.61634 * 15 13 12 17 17 N 1.46929 * 108.77448 * 54.63265 * 16 15 13 18 18 C 1.36940 * 120.62768 * 126.41270 * 17 16 15 19 19 H 1.07996 * 120.00542 * 207.67159 * 18 17 16 20 20 C 1.38823 * 119.99740 * 27.67272 * 18 17 16 21 21 N 1.31613 * 119.99849 * 17.36789 * 20 18 17 22 22 Si 1.86797 * 119.99637 * 197.36127 * 20 18 17 23 23 H 1.48497 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46787 * 120.00784 * 22 20 18 25 25 H 1.48497 * 109.47199 * 239.99960 * 22 20 18 26 26 C 1.46921 * 118.74340 * 306.39496 * 17 16 15 27 27 H 1.08997 * 109.58713 * 173.39512 * 26 17 16 28 28 C 1.53001 * 109.58319 * 293.82173 * 26 17 16 29 29 C 1.53038 * 109.45923 * 154.92998 * 13 12 10 30 30 N 1.31958 * 120.83380 * 0.56020 * 8 7 6 31 31 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46969 * 300.00008 * 1 2 3 33 33 H 1.08994 * 109.47286 * 59.99439 * 1 2 3 34 34 H 1.09004 * 109.46505 * 240.00072 * 2 1 3 35 35 H 1.08997 * 109.47111 * 120.01045 * 2 1 3 36 36 H 1.08003 * 120.44106 * 359.97438 * 5 4 3 37 37 H 1.08007 * 120.75466 * 180.02562 * 6 5 4 38 38 H 1.07998 * 120.35021 * 179.70120 * 7 6 5 39 39 H 1.09003 * 109.46487 * 245.27859 * 9 8 7 40 40 H 1.08995 * 109.47232 * 5.27926 * 9 8 7 41 41 H 0.96999 * 119.99969 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.50019 * 298.56765 * 15 13 12 43 43 H 1.09004 * 109.49566 * 58.66781 * 15 13 12 44 44 H 1.08995 * 109.58560 * 174.42488 * 16 15 13 45 45 H 1.09003 * 109.58331 * 294.84975 * 16 15 13 46 46 H 0.97006 * 119.99879 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47553 * 59.99848 * 28 26 17 48 48 H 1.09003 * 109.46869 * 180.02562 * 28 26 17 49 49 H 1.09005 * 109.47361 * 299.99716 * 28 26 17 50 50 H 1.08997 * 109.49973 * 301.33289 * 29 13 12 51 51 H 1.09001 * 109.49837 * 61.43214 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 0.0005 5 6 3.8755 2.8115 0.0011 6 6 5.2490 2.9790 0.0022 7 6 6.0540 1.8479 -0.0032 8 6 5.4646 0.5995 0.0021 9 6 6.3322 -0.6327 0.0026 10 6 5.9541 -1.5127 1.1661 11 8 5.0671 -1.1730 1.9202 12 7 6.6009 -2.6778 1.3679 13 6 6.2329 -3.5335 2.4986 14 1 5.1587 -3.4666 2.6702 15 6 6.9793 -3.0710 3.7520 16 6 6.5660 -3.9460 4.9396 17 7 6.7902 -5.3552 4.5893 18 6 7.5421 -6.1642 5.3989 19 1 8.0735 -7.0051 4.9784 20 6 7.6213 -5.9034 6.7601 21 7 6.7337 -5.1179 7.3323 22 14 8.9875 -6.6673 7.7794 23 1 9.8489 -7.5036 6.9054 24 1 9.8049 -5.5921 8.3966 25 1 8.3951 -7.5131 8.8466 26 6 6.1920 -5.8800 3.3543 27 1 6.5456 -6.8962 3.1801 28 6 4.6673 -5.8793 3.4824 29 6 6.6094 -4.9833 2.1845 30 7 4.1512 0.4717 0.0010 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 3.2195 3.6695 0.0007 37 1 5.6849 3.9672 0.0031 38 1 7.1297 1.9437 -0.0074 39 1 6.1869 -1.1796 -0.9290 40 1 7.3783 -0.3405 0.0930 41 1 7.3095 -2.9500 0.7640 42 1 8.0534 -3.1612 3.5900 43 1 6.7286 -2.0310 3.9617 44 1 7.1664 -3.6861 5.8114 45 1 5.5103 -3.7878 5.1601 46 1 6.7888 -4.9360 8.2835 47 1 4.3172 -4.8608 3.6502 48 1 4.2255 -6.2693 2.5654 49 1 4.3730 -6.5077 4.3230 50 1 6.0956 -5.3045 1.2785 51 1 7.6870 -5.0556 2.0373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947561214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:38 Heat of formation + Delta-G solvation = -24.026921 kcal Electronic energy + Delta-G solvation = -30994.613402 eV Core-core repulsion = 26894.724736 eV Total energy + Delta-G solvation = -4099.888665 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.86010 -39.59895 -38.24908 -37.54984 -34.41320 -33.24491 -32.52203 -32.32343 -31.30913 -30.66252 -29.59024 -28.02654 -26.78704 -24.41055 -24.04325 -22.99170 -22.38325 -21.89689 -21.49512 -20.15762 -18.46894 -18.32891 -17.27556 -16.69530 -16.52587 -16.24031 -16.15325 -15.74237 -15.07108 -14.69215 -14.29470 -14.14252 -14.08083 -13.79131 -13.70838 -13.44474 -13.20606 -13.04480 -12.77266 -12.70496 -12.54092 -12.36603 -12.23809 -12.13973 -11.94878 -11.61232 -11.38571 -11.05536 -10.90160 -10.81338 -10.78204 -10.59104 -10.31558 -10.15827 -10.01187 -9.97464 -9.72115 -9.69157 -9.58658 -9.28623 -8.66058 -8.54466 -8.38150 -6.67563 -5.77193 -3.19478 0.97549 1.18894 2.88538 2.93715 3.32096 3.37962 3.45539 3.47388 3.74776 3.95153 4.49575 4.51877 4.83080 4.88308 4.90629 4.93364 4.98967 5.06874 5.19745 5.21214 5.30116 5.33024 5.40947 5.42455 5.54290 5.60176 5.64558 5.73181 5.76498 5.82765 5.90952 6.01514 6.05466 6.09796 6.28152 6.28467 6.35764 6.47166 6.50133 6.60562 6.69553 6.81988 6.92551 6.99905 7.17429 7.18131 7.41344 7.70796 7.78053 7.81518 7.82931 8.46543 8.51420 9.22658 9.86381 10.43089 11.30958 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002371 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.136889 B =11804.783814 C =12418.322355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.328 3.672 5 C -0.197 4.197 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.188 3.812 9 C -0.096 4.096 10 C 0.515 3.485 11 O -0.522 6.522 12 N -0.728 5.728 13 C 0.151 3.849 14 H 0.084 0.916 15 C -0.146 4.146 16 C 0.174 3.826 17 N -0.585 5.585 18 C -0.252 4.252 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.170 3.830 27 H 0.065 0.935 28 C -0.162 4.162 29 C -0.132 4.132 30 N -0.510 5.510 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.393 0.607 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.020 0.980 46 H 0.253 0.747 47 H 0.049 0.951 48 H 0.036 0.964 49 H 0.054 0.946 50 H 0.055 0.945 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.424 13.167 -19.776 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.148 3.852 5 C -0.218 4.218 6 C -0.067 4.067 7 C -0.228 4.228 8 C 0.050 3.950 9 C -0.136 4.136 10 C 0.299 3.701 11 O -0.397 6.397 12 N -0.379 5.379 13 C 0.048 3.952 14 H 0.102 0.898 15 C -0.186 4.186 16 C 0.048 3.952 17 N -0.307 5.307 18 C -0.382 4.382 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.544 5.544 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.062 3.938 27 H 0.083 0.917 28 C -0.222 4.222 29 C -0.172 4.172 30 N -0.234 5.234 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.226 0.774 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.038 0.962 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.700 12.794 -19.022 23.401 hybrid contribution 1.425 0.153 0.370 1.480 sum -3.275 12.946 -18.651 22.939 Atomic orbital electron populations 1.21816 0.93162 1.02927 1.03013 1.22611 0.94489 0.80834 1.02965 1.86195 1.16867 1.30981 1.87683 1.19738 0.84087 0.89715 0.91641 1.21038 0.95921 0.95736 1.09082 1.21320 0.92306 0.99257 0.93831 1.21743 1.01291 0.92533 1.07248 1.20173 0.88698 0.93466 0.92647 1.20684 0.99620 0.93631 0.99690 1.20120 0.82286 0.81754 0.85917 1.90745 1.30094 1.72149 1.46695 1.46301 1.38992 1.21327 1.31258 1.21058 1.00305 0.88780 0.85030 0.89820 1.22557 0.99537 0.99697 0.96848 1.20737 0.98557 0.82024 0.93902 1.44181 1.57983 1.06138 1.22375 1.19204 1.20737 1.10065 0.88145 0.91625 1.25049 0.98144 0.99907 0.96523 1.70050 1.33554 1.40527 1.10237 0.86255 0.81971 0.78509 0.80214 1.20292 1.21634 1.21787 1.20436 0.91383 0.95314 0.86689 0.91705 1.22302 0.98509 1.01447 0.99902 1.22290 1.01065 0.94489 0.99324 1.67043 1.05788 1.33055 1.17473 0.90270 0.91659 0.91937 0.91869 0.90928 0.84352 0.84169 0.84579 0.87171 0.87220 0.77357 0.92757 0.93073 0.89356 0.96167 0.93689 0.93218 0.94534 0.92653 0.92659 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.07 0.79 6.03 37.16 0.22 1.01 16 3 O -0.31 -4.11 10.12 -18.72 -0.19 -4.30 16 4 C 0.33 4.44 7.49 -17.12 -0.13 4.31 16 5 C -0.20 -2.13 10.04 -39.28 -0.39 -2.52 16 6 C -0.04 -0.38 10.17 -39.31 -0.40 -0.78 16 7 C -0.21 -2.03 9.70 -39.43 -0.38 -2.41 16 8 C 0.19 2.29 5.76 -82.61 -0.48 1.82 16 9 C -0.10 -0.96 6.10 -29.03 -0.18 -1.14 16 10 C 0.51 7.49 7.73 -10.99 -0.08 7.41 16 11 O -0.52 -10.11 14.99 5.56 0.08 -10.02 16 12 N -0.73 -9.88 5.08 -53.77 -0.27 -10.15 16 13 C 0.15 2.61 2.21 -67.89 -0.15 2.46 16 14 H 0.08 1.66 5.92 -51.93 -0.31 1.35 16 15 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 16 C 0.17 4.22 4.90 -3.71 -0.02 4.20 16 17 N -0.59 -14.28 2.70 -164.77 -0.45 -14.72 16 18 C -0.25 -6.78 9.59 -15.05 -0.14 -6.93 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 21 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 22 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 26 C 0.17 3.43 3.29 -67.60 -0.22 3.21 16 27 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 28 C -0.16 -3.14 9.03 37.16 0.34 -2.81 16 29 C -0.13 -2.17 5.02 -26.61 -0.13 -2.30 16 30 N -0.51 -7.34 8.08 -9.55 -0.08 -7.41 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.14 0.93 7.94 -52.49 -0.42 0.52 16 39 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.11 0.75 7.86 -51.93 -0.41 0.35 16 41 H 0.39 4.00 8.60 -40.82 -0.35 3.65 16 42 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 45 H 0.02 0.53 7.50 -51.93 -0.39 0.14 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.01 5.72 -51.93 -0.30 0.71 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 408.42 15.07 6.15 6.15 Total: -1.00 -33.90 408.42 -9.52 -43.42 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -8.36 Total: 4.53 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.01 Total: 1.48 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.17 Total: -57.81 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.11 Total: -14.32 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.90 -9.52 -43.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947561214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.392 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds