Wall clock time and date at job start Wed Apr 1 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47589 * 2 1 4 4 C 1.35673 * 117.00221 * 179.97438 * 3 2 1 5 5 C 1.38916 * 119.68657 * 180.02562 * 4 3 2 6 6 C 1.38373 * 119.11205 * 179.97438 * 5 4 3 7 7 C 1.38829 * 118.48631 * 0.27598 * 6 5 4 8 8 C 1.38048 * 119.28605 * 359.45306 * 7 6 5 9 9 C 1.50702 * 119.57782 * 180.27800 * 8 7 6 10 10 C 1.50699 * 109.47196 * 125.28039 * 9 8 7 11 11 O 1.21280 * 119.99846 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00045 * 179.97438 * 10 9 8 13 13 C 1.46505 * 119.99824 * 180.02562 * 12 10 9 14 14 H 1.08992 * 109.45965 * 34.96919 * 13 12 10 15 15 C 1.53040 * 109.45476 * 274.99603 * 13 12 10 16 16 C 1.53197 * 109.31023 * 178.61634 * 15 13 12 17 17 N 1.46929 * 108.77448 * 54.63265 * 16 15 13 18 18 C 1.36940 * 120.62768 * 126.41270 * 17 16 15 19 19 H 1.07996 * 120.00542 * 207.67159 * 18 17 16 20 20 C 1.38823 * 119.99740 * 27.67272 * 18 17 16 21 21 N 1.31613 * 119.99849 * 17.36789 * 20 18 17 22 22 Si 1.86797 * 119.99637 * 197.36127 * 20 18 17 23 23 H 1.48497 * 109.47432 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46787 * 120.00784 * 22 20 18 25 25 H 1.48497 * 109.47199 * 239.99960 * 22 20 18 26 26 C 1.46921 * 118.74340 * 306.39496 * 17 16 15 27 27 H 1.08997 * 109.58713 * 173.39512 * 26 17 16 28 28 C 1.53001 * 109.58319 * 293.82173 * 26 17 16 29 29 C 1.53038 * 109.45923 * 154.92998 * 13 12 10 30 30 N 1.31958 * 120.83380 * 0.56020 * 8 7 6 31 31 H 1.08998 * 109.47461 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46969 * 300.00008 * 1 2 3 33 33 H 1.08994 * 109.47286 * 59.99439 * 1 2 3 34 34 H 1.09004 * 109.46505 * 240.00072 * 2 1 3 35 35 H 1.08997 * 109.47111 * 120.01045 * 2 1 3 36 36 H 1.08003 * 120.44106 * 359.97438 * 5 4 3 37 37 H 1.08007 * 120.75466 * 180.02562 * 6 5 4 38 38 H 1.07998 * 120.35021 * 179.70120 * 7 6 5 39 39 H 1.09003 * 109.46487 * 245.27859 * 9 8 7 40 40 H 1.08995 * 109.47232 * 5.27926 * 9 8 7 41 41 H 0.96999 * 119.99969 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.50019 * 298.56765 * 15 13 12 43 43 H 1.09004 * 109.49566 * 58.66781 * 15 13 12 44 44 H 1.08995 * 109.58560 * 174.42488 * 16 15 13 45 45 H 1.09003 * 109.58331 * 294.84975 * 16 15 13 46 46 H 0.97006 * 119.99879 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.47553 * 59.99848 * 28 26 17 48 48 H 1.09003 * 109.46869 * 180.02562 * 28 26 17 49 49 H 1.09005 * 109.47361 * 299.99716 * 28 26 17 50 50 H 1.08997 * 109.49973 * 301.33289 * 29 13 12 51 51 H 1.09001 * 109.49837 * 61.43214 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3515 1.5249 0.0005 5 6 3.8755 2.8115 0.0011 6 6 5.2490 2.9790 0.0022 7 6 6.0540 1.8479 -0.0032 8 6 5.4646 0.5995 0.0021 9 6 6.3322 -0.6327 0.0026 10 6 5.9541 -1.5127 1.1661 11 8 5.0671 -1.1730 1.9202 12 7 6.6009 -2.6778 1.3679 13 6 6.2329 -3.5335 2.4986 14 1 5.1587 -3.4666 2.6702 15 6 6.9793 -3.0710 3.7520 16 6 6.5660 -3.9460 4.9396 17 7 6.7902 -5.3552 4.5893 18 6 7.5421 -6.1642 5.3989 19 1 8.0735 -7.0051 4.9784 20 6 7.6213 -5.9034 6.7601 21 7 6.7337 -5.1179 7.3323 22 14 8.9875 -6.6673 7.7794 23 1 9.8489 -7.5036 6.9054 24 1 9.8049 -5.5921 8.3966 25 1 8.3951 -7.5131 8.8466 26 6 6.1920 -5.8800 3.3543 27 1 6.5456 -6.8962 3.1801 28 6 4.6673 -5.8793 3.4824 29 6 6.6094 -4.9833 2.1845 30 7 4.1512 0.4717 0.0010 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 3.2195 3.6695 0.0007 37 1 5.6849 3.9672 0.0031 38 1 7.1297 1.9437 -0.0074 39 1 6.1869 -1.1796 -0.9290 40 1 7.3783 -0.3405 0.0930 41 1 7.3095 -2.9500 0.7640 42 1 8.0534 -3.1612 3.5900 43 1 6.7286 -2.0310 3.9617 44 1 7.1664 -3.6861 5.8114 45 1 5.5103 -3.7878 5.1601 46 1 6.7888 -4.9360 8.2835 47 1 4.3172 -4.8608 3.6502 48 1 4.2255 -6.2693 2.5654 49 1 4.3730 -6.5077 4.3230 50 1 6.0956 -5.3045 1.2785 51 1 7.6870 -5.0556 2.0373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947561214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:36 Heat of formation + Delta-G solvation = -47.444322 kcal Electronic energy + Delta-G solvation = -30995.628856 eV Core-core repulsion = 26894.724736 eV Total energy + Delta-G solvation = -4100.904120 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.73323 -40.83762 -39.43747 -38.82268 -35.95886 -34.33041 -34.04461 -33.15225 -32.56454 -32.04193 -31.20808 -29.12382 -28.25787 -26.18274 -24.98262 -24.06286 -23.65336 -23.35138 -22.74770 -21.35000 -20.06116 -19.29200 -18.84487 -17.94935 -17.61014 -17.25670 -17.15043 -16.86400 -16.53103 -16.11606 -15.66324 -15.51747 -15.20577 -15.05913 -14.96982 -14.71346 -14.35513 -14.33467 -14.17659 -13.94745 -13.81508 -13.43042 -13.36864 -13.16535 -12.94086 -12.92940 -12.75517 -12.66880 -12.56177 -12.46482 -12.27150 -12.02271 -11.97518 -11.76285 -11.71255 -11.47609 -11.12522 -10.84320 -10.72696 -10.56231 -10.45713 -9.91297 -9.38686 -8.69172 -7.85587 -5.30643 0.16163 0.41351 1.46437 1.48402 1.58881 1.78956 2.09217 2.25274 2.51945 2.87446 3.14308 3.30120 3.61638 3.80599 3.83867 4.02339 4.03458 4.06923 4.11581 4.16806 4.22253 4.31344 4.37794 4.41899 4.45592 4.51861 4.52489 4.56921 4.70104 4.77495 4.79609 4.83128 4.83599 4.90130 4.94805 5.04051 5.10644 5.15846 5.16614 5.16652 5.26707 5.33266 5.44133 5.51324 5.57598 5.65764 5.68697 5.75382 6.28343 6.40738 6.72309 6.98069 7.15541 7.44344 7.87752 8.40220 9.21117 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002371 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.136889 B =11804.783814 C =12418.322355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.322 6.322 4 C 0.291 3.709 5 C -0.203 4.203 6 C -0.039 4.039 7 C -0.201 4.201 8 C 0.156 3.844 9 C -0.084 4.084 10 C 0.510 3.490 11 O -0.577 6.577 12 N -0.712 5.712 13 C 0.164 3.836 14 H 0.054 0.946 15 C -0.130 4.130 16 C 0.186 3.814 17 N -0.599 5.599 18 C -0.255 4.255 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.294 1.294 25 H -0.296 1.296 26 C 0.160 3.840 27 H 0.071 0.929 28 C -0.153 4.153 29 C -0.117 4.117 30 N -0.542 5.542 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.154 0.846 37 H 0.179 0.821 38 H 0.172 0.828 39 H 0.136 0.864 40 H 0.151 0.849 41 H 0.416 0.584 42 H 0.063 0.937 43 H 0.038 0.962 44 H 0.052 0.948 45 H -0.015 1.015 46 H 0.247 0.753 47 H 0.030 0.970 48 H 0.074 0.926 49 H 0.027 0.973 50 H 0.090 0.910 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 13.603 -22.913 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.006 4.006 3 O -0.230 6.230 4 C 0.112 3.888 5 C -0.223 4.223 6 C -0.064 4.064 7 C -0.221 4.221 8 C 0.019 3.981 9 C -0.124 4.124 10 C 0.297 3.703 11 O -0.456 6.456 12 N -0.365 5.365 13 C 0.059 3.941 14 H 0.073 0.927 15 C -0.170 4.170 16 C 0.059 3.941 17 N -0.321 5.321 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.185 1.185 24 H -0.221 1.221 25 H -0.223 1.223 26 C 0.053 3.947 27 H 0.089 0.911 28 C -0.212 4.212 29 C -0.156 4.156 30 N -0.265 5.265 31 H 0.112 0.888 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.190 0.810 39 H 0.154 0.846 40 H 0.169 0.831 41 H 0.253 0.747 42 H 0.082 0.918 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.003 0.997 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.046 0.954 50 H 0.108 0.892 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.401 13.208 -22.235 25.973 hybrid contribution 0.703 0.040 1.322 1.498 sum -1.698 13.248 -20.913 24.814 Atomic orbital electron populations 1.21809 0.90834 1.04035 1.03487 1.22580 0.96262 0.80504 1.01218 1.86172 1.17456 1.31255 1.88129 1.20192 0.84117 0.90881 0.93633 1.21393 0.97324 0.95150 1.08479 1.21835 0.91436 1.01006 0.92112 1.22192 1.03163 0.91648 1.05081 1.20709 0.88355 0.95381 0.93643 1.20768 1.01239 0.92179 0.98190 1.20986 0.81114 0.81798 0.86395 1.90741 1.32525 1.73325 1.48985 1.45999 1.39491 1.20716 1.30276 1.20613 0.98129 0.90161 0.85208 0.92749 1.22297 1.00179 0.97922 0.96583 1.20394 0.95700 0.83390 0.94620 1.44391 1.58406 1.05959 1.23383 1.19589 1.20461 1.09933 0.88564 0.90862 1.25832 1.00307 1.01016 0.97833 1.70227 1.35554 1.42609 1.10020 0.85223 0.79292 0.77512 0.78520 1.18542 1.22055 1.22336 1.20722 0.91354 0.96478 0.86179 0.91081 1.22186 0.98485 0.99917 1.00611 1.22114 1.02271 0.92526 0.98665 1.66982 1.07188 1.34020 1.18348 0.88839 0.91901 0.90637 0.92057 0.94179 0.82781 0.80332 0.81049 0.84642 0.83126 0.74701 0.91829 0.94283 0.92969 0.99727 0.94386 0.95062 0.90753 0.95377 0.89181 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.28 71.98 0.74 -1.87 16 2 C 0.07 1.77 6.03 71.98 0.43 2.21 16 3 O -0.32 -8.97 10.12 -89.90 -0.91 -9.87 16 4 C 0.29 8.05 7.49 84.79 0.63 8.68 16 5 C -0.20 -4.19 10.04 22.46 0.23 -3.97 16 6 C -0.04 -0.59 10.17 22.44 0.23 -0.37 16 7 C -0.20 -3.28 9.70 22.37 0.22 -3.07 16 8 C 0.16 3.54 5.76 42.50 0.24 3.79 16 9 C -0.08 -1.42 6.10 29.10 0.18 -1.24 16 10 C 0.51 14.10 7.73 87.66 0.68 14.78 16 11 O -0.58 -22.86 14.99 -3.03 -0.05 -22.91 16 12 N -0.71 -17.57 5.08 -442.41 -2.25 -19.81 16 13 C 0.16 5.50 2.21 45.02 0.10 5.60 16 14 H 0.05 2.20 5.92 -2.39 -0.01 2.19 16 15 C -0.13 -5.23 5.65 30.67 0.17 -5.06 16 16 C 0.19 9.42 4.90 86.36 0.42 9.85 16 17 N -0.60 -29.66 2.70 -675.22 -1.82 -31.49 16 18 C -0.26 -13.83 9.59 84.04 0.81 -13.03 16 19 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 20 C -0.05 -3.09 4.91 84.87 0.42 -2.67 16 21 N -0.94 -56.99 11.19 21.65 0.24 -56.75 16 22 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 23 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 C 0.16 6.27 3.29 44.98 0.15 6.42 16 27 H 0.07 2.71 7.93 -2.39 -0.02 2.69 16 28 C -0.15 -5.94 9.03 71.98 0.65 -5.29 16 29 C -0.12 -3.51 5.02 30.67 0.15 -3.36 16 30 N -0.54 -15.71 8.08 -297.00 -2.40 -18.11 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.52 8.11 -2.38 -0.02 1.50 16 35 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 37 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 38 H 0.17 1.48 7.94 -2.91 -0.02 1.45 16 39 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.15 1.29 7.86 -2.39 -0.02 1.27 16 41 H 0.42 6.67 8.60 -92.71 -0.80 5.88 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 44 H 0.05 3.01 6.04 -2.39 -0.01 2.99 16 45 H -0.02 -0.87 7.50 -2.39 -0.02 -0.89 16 46 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 47 H 0.03 1.31 5.72 -2.39 -0.01 1.29 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.85 408.42 1.43 -79.43 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.13 Total: 21.00 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.45 Total: 11.40 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -6.23 Total: -126.16 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.95 Total: -32.79 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -80.85 1.43 -79.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947561214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.981 kcal (2) G-P(sol) polarization free energy of solvation -80.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds