Wall clock time and date at job start Wed Apr 1 2020 05:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.47152 * 2 1 4 4 C 1.35425 * 117.00275 * 180.02562 * 3 2 1 5 5 N 1.32244 * 119.79546 * 0.02562 * 4 3 2 6 6 C 1.31879 * 121.80032 * 180.02562 * 5 4 3 7 7 C 1.50700 * 119.40950 * 179.97438 * 6 5 4 8 8 C 1.38363 * 121.18373 * 0.02562 * 6 5 4 9 9 C 1.38329 * 119.45854 * 0.25081 * 8 6 5 10 10 C 1.39989 * 118.34993 * 359.51164 * 9 8 6 11 11 C 1.47524 * 120.59827 * 180.21809 * 10 9 8 12 12 O 1.21587 * 119.99986 * 180.27478 * 11 10 9 13 13 N 1.34781 * 120.00277 * 0.27091 * 11 10 9 14 14 C 1.46498 * 120.00226 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.45676 * 324.97105 * 14 13 11 16 16 C 1.53033 * 109.46183 * 84.93287 * 14 13 11 17 17 C 1.53194 * 109.31592 * 181.38460 * 16 14 13 18 18 N 1.46924 * 108.77395 * 305.36881 * 17 16 14 19 19 C 1.36942 * 120.62794 * 233.58540 * 18 17 16 20 20 H 1.07998 * 119.99716 * 151.84403 * 19 18 17 21 21 C 1.38807 * 119.99682 * 331.84163 * 19 18 17 22 22 N 1.31615 * 120.00509 * 343.06811 * 21 19 18 23 23 Si 1.86805 * 119.99807 * 163.07106 * 21 19 18 24 24 H 1.48503 * 109.46845 * 89.99648 * 23 21 19 25 25 H 1.48495 * 109.47304 * 209.99658 * 23 21 19 26 26 H 1.48497 * 109.46863 * 330.00117 * 23 21 19 27 27 C 1.46932 * 118.74069 * 53.59950 * 18 17 16 28 28 H 1.08997 * 109.58269 * 186.60449 * 27 18 17 29 29 C 1.53000 * 109.58280 * 66.18622 * 27 18 17 30 30 C 1.53044 * 109.45640 * 205.00027 * 14 13 11 31 31 H 1.08999 * 109.47467 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46828 * 300.00056 * 1 2 3 33 33 H 1.09003 * 109.47176 * 59.99353 * 1 2 3 34 34 H 1.09002 * 109.46900 * 240.00729 * 2 1 3 35 35 H 1.09001 * 109.47266 * 120.00107 * 2 1 3 36 36 H 1.08994 * 109.47023 * 270.02486 * 7 6 5 37 37 H 1.09001 * 109.46394 * 30.02466 * 7 6 5 38 38 H 1.09001 * 109.47104 * 150.01963 * 7 6 5 39 39 H 1.07999 * 120.27079 * 179.97438 * 8 6 5 40 40 H 1.08001 * 120.82474 * 179.74373 * 9 8 6 41 41 H 0.97006 * 119.99496 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.49741 * 301.33752 * 16 14 13 43 43 H 1.09001 * 109.49651 * 61.43014 * 16 14 13 44 44 H 1.08992 * 109.58947 * 185.57389 * 17 16 14 45 45 H 1.09004 * 109.70274 * 65.21883 * 17 16 14 46 46 H 0.96998 * 120.00483 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.47148 * 300.70720 * 29 27 18 48 48 H 1.09001 * 109.47482 * 60.70384 * 29 27 18 49 49 H 1.08997 * 109.47016 * 180.71019 * 29 27 18 50 50 H 1.08995 * 109.49640 * 298.56241 * 30 14 13 51 51 H 1.09000 * 109.49592 * 58.66339 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3489 1.5247 -0.0005 5 7 4.1508 0.4731 -0.0015 6 6 5.4635 0.6001 -0.0016 7 6 6.3265 -0.6353 -0.0022 8 6 6.0626 1.8473 -0.0001 9 6 5.2714 2.9821 0.0068 10 6 3.8807 2.8228 0.0015 11 6 2.9901 3.9989 0.0036 12 8 1.7837 3.8480 0.0040 13 7 3.5139 5.2408 0.0052 14 6 2.6295 6.4088 0.0078 15 1 1.7389 6.1912 -0.5816 16 6 2.2214 6.7360 1.4460 17 6 1.2694 7.9363 1.4419 18 7 1.9134 9.0482 0.7295 19 6 2.0343 10.2781 1.3196 20 1 2.8496 10.9309 1.0448 21 6 1.1091 10.6854 2.2707 22 7 -0.0478 10.0659 2.3712 23 14 1.5059 12.1131 3.4082 24 1 1.0533 13.3829 2.7852 25 1 0.8079 11.9217 4.7049 26 1 2.9717 12.1697 3.6386 27 6 2.4249 8.8157 -0.6281 28 1 2.9719 9.6951 -0.9681 29 6 1.2564 8.5369 -1.5756 30 6 3.3640 7.6057 -0.6007 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8901 35 1 1.8934 -0.5138 0.8900 36 1 6.5342 -0.9338 1.0253 37 1 5.8050 -1.4424 -0.5167 38 1 7.2642 -0.4232 -0.5157 39 1 7.1391 1.9342 0.0003 40 1 5.7157 3.9664 0.0123 41 1 4.4764 5.3612 0.0045 42 1 1.7191 5.8748 1.8865 43 1 3.1094 6.9779 2.0301 44 1 1.0540 8.2353 2.4676 45 1 0.3414 7.6676 0.9371 46 1 -0.6945 10.3508 3.0356 47 1 0.7084 7.6608 -1.2287 48 1 0.5895 9.3989 -1.5936 49 1 1.6388 8.3522 -2.5795 50 1 4.2411 7.8394 0.0026 51 1 3.6748 7.3633 -1.6170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947867865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:07 Heat of formation + Delta-G solvation = -45.437984 kcal Electronic energy + Delta-G solvation = -31231.471916 eV Core-core repulsion = 27130.654797 eV Total energy + Delta-G solvation = -4100.817119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.03093 -40.68090 -39.23701 -39.13929 -36.01572 -34.61151 -34.00450 -33.26254 -32.40593 -31.89615 -31.24651 -29.02976 -28.32382 -26.22443 -25.00313 -24.38001 -23.67601 -23.35520 -23.05516 -21.51744 -20.22611 -19.46709 -18.96659 -18.17275 -17.91800 -17.41973 -16.98212 -16.54178 -15.97745 -15.87659 -15.51277 -15.45027 -15.39661 -15.16773 -15.05612 -14.74526 -14.30662 -14.15106 -14.09428 -13.96403 -13.84817 -13.52399 -13.31655 -13.14175 -13.01272 -12.93446 -12.83321 -12.61526 -12.57346 -12.47849 -12.27067 -12.04960 -12.00408 -11.76138 -11.70248 -11.48442 -11.20173 -11.04797 -10.96068 -10.59211 -10.54442 -10.01278 -9.45551 -8.67272 -7.84500 -5.29927 -0.36915 0.23123 1.47493 1.49241 1.58645 1.86395 1.98201 2.12405 2.52848 2.75785 3.10403 3.31465 3.61593 3.68396 3.73232 3.85675 3.90579 4.01700 4.10052 4.11285 4.21686 4.30270 4.33409 4.39784 4.45714 4.52811 4.68600 4.71486 4.76719 4.78096 4.82041 4.85253 4.87522 4.89898 4.94361 5.00621 5.10033 5.14514 5.16262 5.17207 5.17774 5.34323 5.44704 5.49165 5.51548 5.59776 5.69486 5.76397 6.23496 6.42096 6.58225 6.76347 7.16688 7.29962 7.88786 8.41644 9.22298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015661 B = 0.002476 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.447433 B =11306.186675 C =11969.177704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.301 6.301 4 C 0.354 3.646 5 N -0.561 5.561 6 C 0.182 3.818 7 C -0.105 4.105 8 C -0.208 4.208 9 C 0.002 3.998 10 C -0.242 4.242 11 C 0.557 3.443 12 O -0.567 6.567 13 N -0.706 5.706 14 C 0.164 3.836 15 H 0.060 0.940 16 C -0.131 4.131 17 C 0.187 3.813 18 N -0.599 5.599 19 C -0.256 4.256 20 H 0.074 0.926 21 C -0.054 4.054 22 N -0.938 5.938 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.160 3.840 28 H 0.073 0.927 29 C -0.154 4.154 30 C -0.117 4.117 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.412 0.588 42 H 0.037 0.963 43 H 0.062 0.938 44 H 0.052 0.948 45 H -0.012 1.012 46 H 0.247 0.753 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.074 0.926 50 H 0.078 0.922 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.487 -22.235 -7.328 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.015 4.015 3 O -0.207 6.207 4 C 0.174 3.826 5 N -0.287 5.287 6 C 0.044 3.956 7 C -0.162 4.162 8 C -0.228 4.228 9 C -0.023 4.023 10 C -0.248 4.248 11 C 0.345 3.655 12 O -0.447 6.447 13 N -0.358 5.358 14 C 0.059 3.941 15 H 0.078 0.922 16 C -0.171 4.171 17 C 0.060 3.940 18 N -0.321 5.321 19 C -0.386 4.386 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.584 5.584 23 Si 0.794 3.206 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.053 3.947 28 H 0.091 0.909 29 C -0.213 4.213 30 C -0.156 4.156 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.203 0.797 40 H 0.194 0.806 41 H 0.249 0.751 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.006 0.994 46 H 0.056 0.944 47 H 0.050 0.950 48 H 0.047 0.953 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.883 -22.918 -7.228 28.805 hybrid contribution -0.329 1.544 0.926 1.830 sum 15.554 -21.374 -6.303 27.176 Atomic orbital electron populations 1.21817 0.91993 1.04061 1.02655 1.22830 0.95913 0.80271 1.02488 1.86531 1.16731 1.31567 1.85822 1.20051 0.84543 0.89281 0.88706 1.67354 1.07308 1.31902 1.22156 1.21994 0.88207 0.97605 0.87768 1.20951 0.98296 0.92323 1.04636 1.22195 1.03445 0.90912 1.06210 1.22027 0.89408 1.02078 0.88809 1.20044 0.95635 0.91098 1.18004 1.18237 0.87584 0.83580 0.76090 1.90815 1.16566 1.86467 1.50814 1.45863 1.10799 1.04357 1.74815 1.20712 0.93143 0.84555 0.95667 0.92175 1.22317 1.00107 0.97616 0.97104 1.20379 0.91150 0.85710 0.96777 1.44374 1.68566 1.07243 1.11916 1.19541 1.05955 0.94377 1.18761 0.90840 1.25841 0.94586 1.01020 1.03502 1.70211 1.06731 1.44922 1.36554 0.85300 0.77988 0.79231 0.78063 1.21239 1.22492 1.19082 1.20719 0.93155 0.96236 0.84542 0.90861 1.22197 0.99654 0.99798 0.99676 1.22139 0.98594 0.93311 1.01569 0.87401 0.92789 0.92519 0.91117 0.91384 0.88573 0.90623 0.87175 0.79675 0.80619 0.75065 0.94373 0.91913 0.92967 0.99388 0.94369 0.94982 0.95262 0.90683 0.90385 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 10.28 71.98 0.74 -2.33 16 2 C 0.06 1.42 6.03 71.98 0.43 1.86 16 3 O -0.30 -9.81 8.22 -66.39 -0.55 -10.36 16 4 C 0.35 10.23 7.51 85.13 0.64 10.87 16 5 N -0.56 -13.05 9.11 -296.05 -2.70 -15.75 16 6 C 0.18 2.83 6.78 42.58 0.29 3.12 16 7 C -0.11 -0.77 10.16 71.24 0.72 -0.04 16 8 C -0.21 -2.47 9.71 22.32 0.22 -2.25 16 9 C 0.00 0.03 9.64 22.72 0.22 0.25 16 10 C -0.24 -6.43 5.90 -19.91 -0.12 -6.55 16 11 C 0.56 18.51 7.74 86.69 0.67 19.18 16 12 O -0.57 -24.61 14.85 16.83 0.25 -24.36 16 13 N -0.71 -19.70 5.03 -445.59 -2.24 -21.94 16 14 C 0.16 5.72 2.21 45.02 0.10 5.82 16 15 H 0.06 2.47 5.94 -2.39 -0.01 2.46 16 16 C -0.13 -5.47 5.65 30.67 0.17 -5.30 16 17 C 0.19 9.56 4.88 86.36 0.42 9.98 16 18 N -0.60 -29.74 2.70 -675.23 -1.82 -31.56 16 19 C -0.26 -13.90 9.58 84.03 0.81 -13.10 16 20 H 0.07 3.80 7.89 -2.91 -0.02 3.78 16 21 C -0.05 -3.07 4.92 84.86 0.42 -2.66 16 22 N -0.94 -57.19 11.20 21.65 0.24 -56.95 16 23 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C 0.16 6.30 3.29 44.97 0.15 6.45 16 28 H 0.07 2.77 7.93 -2.39 -0.02 2.75 16 29 C -0.15 -5.98 9.02 71.98 0.65 -5.33 16 30 C -0.12 -3.56 5.02 30.67 0.15 -3.41 16 31 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 35 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.19 8.07 -2.39 -0.02 0.17 16 39 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.18 1.55 6.52 -2.91 -0.02 1.53 16 41 H 0.41 7.86 6.70 -92.70 -0.62 7.23 16 42 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 3.03 6.06 -2.39 -0.01 3.01 16 45 H -0.01 -0.68 7.49 -2.39 -0.02 -0.70 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 47 H 0.03 1.34 5.73 -2.38 -0.01 1.33 16 48 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 49 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -80.13 404.80 2.21 -77.92 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.31 Total: 19.19 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 6.68 Total: 16.56 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.52 Total: -126.20 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.30 Total: -34.72 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -80.13 2.21 -77.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947867865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.485 kcal (2) G-P(sol) polarization free energy of solvation -80.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds