Wall clock time and date at job start Wed Apr 1 2020 05:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47138 * 2 1 4 4 C 1.35672 * 116.99995 * 180.02562 * 3 2 1 5 5 C 1.38922 * 119.68784 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11324 * 179.97438 * 5 4 3 7 7 C 1.38831 * 118.48732 * 359.73311 * 6 5 4 8 8 C 1.38038 * 119.28598 * 0.54773 * 7 6 5 9 9 C 1.50698 * 119.58283 * 179.70948 * 8 7 6 10 10 C 1.50704 * 109.47287 * 124.72752 * 9 8 7 11 11 O 1.21280 * 119.99618 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99784 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99504 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.92095 * 322.55197 * 13 12 10 15 15 C 1.54914 * 111.00533 * 86.45456 * 13 12 10 16 16 N 1.47430 * 104.83161 * 81.06122 * 15 13 12 17 17 C 1.36931 * 125.64747 * 204.09249 * 16 15 13 18 18 H 1.08002 * 120.00098 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 0.02792 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47026 * 108.70046 * 24.35988 * 16 15 13 26 26 C 1.54330 * 107.26465 * 358.58043 * 25 16 15 27 27 C 1.52997 * 110.84948 * 219.67046 * 26 25 16 28 28 C 1.53000 * 110.51265 * 96.45498 * 26 25 16 29 29 N 1.31970 * 120.83692 * 359.43988 * 8 7 6 30 30 H 1.08995 * 109.47096 * 60.00325 * 1 2 3 31 31 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46898 * 299.99635 * 1 2 3 33 33 H 1.09004 * 109.47532 * 240.00128 * 2 1 3 34 34 H 1.08997 * 109.47357 * 120.00150 * 2 1 3 35 35 H 1.08001 * 120.43953 * 359.97438 * 5 4 3 36 36 H 1.08004 * 120.75536 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.35434 * 180.28501 * 7 6 5 38 38 H 1.09009 * 109.47017 * 4.72986 * 9 8 7 39 39 H 1.09001 * 109.47709 * 244.73569 * 9 8 7 40 40 H 0.96990 * 120.00446 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.36649 * 322.22470 * 15 13 12 42 42 H 1.08996 * 110.46005 * 199.94979 * 15 13 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88414 * 118.13083 * 25 16 15 45 45 H 1.09000 * 109.87822 * 239.29677 * 25 16 15 46 46 H 1.09002 * 109.47247 * 173.69263 * 27 26 25 47 47 H 1.09001 * 109.47766 * 293.69791 * 27 26 25 48 48 H 1.09003 * 109.46787 * 53.69846 * 27 26 25 49 49 H 1.09001 * 109.47438 * 306.49679 * 28 26 25 50 50 H 1.09003 * 109.47176 * 66.49736 * 28 26 25 51 51 H 1.09005 * 109.47163 * 186.49738 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8753 2.8117 -0.0011 6 6 5.2489 2.9792 -0.0011 7 6 6.0539 1.8482 0.0051 8 6 5.4647 0.5999 -0.0004 9 6 6.3322 -0.6323 -0.0003 10 6 5.9551 -1.5121 1.1637 11 8 5.0688 -1.1722 1.9185 12 7 6.6028 -2.6767 1.3658 13 6 6.2358 -3.5322 2.4970 14 1 5.9872 -2.9334 3.3732 15 6 5.0681 -4.4784 2.1217 16 7 5.7036 -5.5917 1.3935 17 6 5.0837 -6.4090 0.4864 18 1 5.6390 -7.2003 0.0048 19 6 3.7417 -6.2205 0.1857 20 7 3.0649 -5.2564 0.7730 21 14 2.8942 -7.3404 -1.0459 22 1 1.4718 -6.9372 -1.1844 23 1 3.5708 -7.2292 -2.3632 24 1 2.9665 -8.7450 -0.5692 25 6 7.1115 -5.6830 1.8073 26 6 7.3665 -4.5449 2.8181 27 6 8.7407 -3.9122 2.5904 28 6 7.2382 -5.0628 4.2520 29 7 4.1512 0.4719 -0.0004 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.2194 3.6697 -0.0015 36 1 5.6848 3.9674 -0.0011 37 1 7.1297 1.9440 0.0099 38 1 7.3785 -0.3400 0.0892 39 1 6.1863 -1.1795 -0.9316 40 1 7.3118 -2.9483 0.7623 41 1 4.3540 -3.9634 1.4791 42 1 4.5723 -4.8465 3.0199 43 1 2.1270 -5.1249 0.5632 44 1 7.2976 -6.6482 2.2780 45 1 7.7612 -5.5592 0.9409 46 1 8.8523 -3.0428 3.2383 47 1 9.5187 -4.6399 2.8215 48 1 8.8303 -3.6031 1.5490 49 1 6.2756 -5.5594 4.3743 50 1 8.0411 -5.7714 4.4556 51 1 7.3066 -4.2265 4.9478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974865692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:27 Heat of formation + Delta-G solvation = -12.904647 kcal Electronic energy + Delta-G solvation = -31896.606430 eV Core-core repulsion = 27797.200063 eV Total energy + Delta-G solvation = -4099.406367 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.61535 -39.52982 -38.17273 -37.45752 -33.77194 -32.99437 -32.88518 -32.07360 -30.88495 -30.65878 -28.56949 -27.59363 -26.55267 -25.57139 -23.94670 -23.36674 -22.53709 -21.94795 -20.49591 -19.63029 -18.64853 -18.08195 -16.89131 -16.67031 -16.30758 -15.97471 -15.93446 -15.74610 -14.85975 -14.40618 -14.16523 -14.01239 -13.80871 -13.70844 -13.69237 -13.32645 -13.16125 -12.92296 -12.59286 -12.39463 -12.37602 -12.13452 -11.99020 -11.87696 -11.75789 -11.63198 -11.29809 -11.24795 -11.13724 -10.95624 -10.74531 -10.49826 -10.37375 -10.19986 -9.90700 -9.76134 -9.75331 -9.65104 -9.42818 -9.21006 -8.63502 -8.32361 -8.24464 -6.76906 -5.58634 -3.01948 1.19791 1.40430 3.19865 3.23970 3.41459 3.45890 3.47574 3.62195 4.00967 4.22358 4.51407 4.72256 5.01096 5.04644 5.13000 5.17603 5.24567 5.25058 5.28694 5.32138 5.35189 5.43774 5.51419 5.55695 5.63198 5.66182 5.78984 5.83050 5.89382 5.94143 6.00456 6.05415 6.07471 6.12552 6.17984 6.20968 6.22535 6.28929 6.44694 6.51078 6.52989 6.64987 6.73257 6.81950 7.06543 7.43751 7.55603 7.65805 7.94235 8.08189 8.14593 8.45156 8.86032 9.26033 9.87755 10.52184 11.43312 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.004047 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.983615 B = 6916.474183 C = 9247.561179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.066 3.934 3 O -0.312 6.312 4 C 0.329 3.671 5 C -0.201 4.201 6 C -0.044 4.044 7 C -0.212 4.212 8 C 0.193 3.807 9 C -0.096 4.096 10 C 0.520 3.480 11 O -0.526 6.526 12 N -0.706 5.706 13 C 0.128 3.872 14 H 0.082 0.918 15 C 0.147 3.853 16 N -0.600 5.600 17 C -0.227 4.227 18 H 0.075 0.925 19 C -0.007 4.007 20 N -0.914 5.914 21 Si 0.910 3.090 22 H -0.291 1.291 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.144 3.856 26 C -0.088 4.088 27 C -0.130 4.130 28 C -0.128 4.128 29 N -0.503 5.503 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.394 0.606 41 H 0.115 0.885 42 H 0.017 0.983 43 H 0.252 0.748 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.063 0.937 50 H 0.053 0.947 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 14.137 -0.462 16.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.009 4.009 3 O -0.219 6.219 4 C 0.150 3.850 5 C -0.222 4.222 6 C -0.070 4.070 7 C -0.233 4.233 8 C 0.055 3.945 9 C -0.137 4.137 10 C 0.305 3.695 11 O -0.401 6.401 12 N -0.357 5.357 13 C 0.022 3.978 14 H 0.100 0.900 15 C 0.021 3.979 16 N -0.326 5.326 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.018 3.982 26 C -0.089 4.089 27 C -0.188 4.188 28 C -0.186 4.186 29 N -0.226 5.226 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.228 0.772 41 H 0.132 0.868 42 H 0.035 0.965 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.567 13.691 0.000 15.184 hybrid contribution 0.272 -0.327 -0.935 1.028 sum 6.839 13.363 -0.935 15.041 Atomic orbital electron populations 1.21801 0.93279 1.03067 1.02552 1.22645 0.94366 0.80323 1.03598 1.86167 1.16799 1.31426 1.87558 1.19777 0.84282 0.89629 0.91333 1.21009 0.95863 0.95688 1.09633 1.21266 0.92328 0.99061 0.94296 1.21702 1.01082 0.92566 1.07920 1.20210 0.88771 0.93374 0.92182 1.20670 0.99096 0.93662 1.00250 1.19949 0.82156 0.81591 0.85851 1.90713 1.29465 1.73185 1.46740 1.45754 1.38807 1.20327 1.30770 1.22431 0.96380 0.90801 0.88138 0.90020 1.22292 0.92389 0.87100 0.96082 1.44449 1.04772 1.35659 1.47754 1.18960 0.92751 1.08827 1.14975 0.90743 1.24772 0.96487 0.98849 1.00192 1.69814 1.08660 1.32516 1.45177 0.86230 0.78714 0.79982 0.80984 1.21637 1.21295 1.21307 1.21397 0.88184 0.94797 0.93851 1.21836 0.94425 0.96227 0.96384 1.21708 0.95903 1.00111 1.01035 1.21691 1.02321 1.00324 0.94267 1.67143 1.05752 1.32881 1.16828 0.92164 0.90071 0.91930 0.91575 0.90563 0.84533 0.84405 0.84780 0.87611 0.86987 0.77153 0.86785 0.96536 0.93723 0.96013 0.96161 0.92855 0.92805 0.92887 0.91801 0.92766 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 16 2 C 0.07 1.07 6.03 37.16 0.22 1.29 16 3 O -0.31 -5.10 10.12 -18.72 -0.19 -5.29 16 4 C 0.33 5.38 7.49 -17.12 -0.13 5.25 16 5 C -0.20 -2.58 10.04 -39.28 -0.39 -2.98 16 6 C -0.04 -0.47 10.17 -39.31 -0.40 -0.87 16 7 C -0.21 -2.47 9.70 -39.44 -0.38 -2.86 16 8 C 0.19 2.89 5.76 -82.61 -0.48 2.41 16 9 C -0.10 -1.30 6.10 -29.03 -0.18 -1.48 16 10 C 0.52 9.33 7.76 -10.98 -0.09 9.25 16 11 O -0.53 -11.67 15.08 5.56 0.08 -11.59 16 12 N -0.71 -12.08 4.69 -51.73 -0.24 -12.32 16 13 C 0.13 2.46 2.56 -65.78 -0.17 2.29 16 14 H 0.08 1.63 7.63 -51.93 -0.40 1.23 16 15 C 0.15 3.62 5.27 -2.52 -0.01 3.61 16 16 N -0.60 -14.96 3.39 -170.06 -0.58 -15.54 16 17 C -0.23 -6.25 10.27 -15.06 -0.15 -6.41 16 18 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 20 N -0.91 -27.03 10.09 55.49 0.56 -26.47 16 21 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.14 2.86 6.42 -3.06 -0.02 2.84 16 26 C -0.09 -1.44 0.81 -152.67 -0.12 -1.56 16 27 C -0.13 -1.65 8.08 37.16 0.30 -1.35 16 28 C -0.13 -1.95 8.39 37.16 0.31 -1.64 16 29 N -0.50 -8.96 8.08 -9.55 -0.08 -9.04 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 34 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16 35 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 36 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 37 H 0.13 1.12 7.94 -52.49 -0.42 0.70 16 38 H 0.11 0.98 7.86 -51.92 -0.41 0.57 16 39 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.39 5.86 6.88 -40.82 -0.28 5.57 16 41 H 0.11 3.30 5.88 -51.93 -0.31 2.99 16 42 H 0.02 0.45 7.81 -51.93 -0.41 0.04 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.02 0.44 7.84 -51.93 -0.41 0.04 16 45 H 0.02 0.39 7.77 -51.93 -0.40 -0.01 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.63 6.36 -51.93 -0.33 0.30 16 49 H 0.06 1.11 7.58 -51.93 -0.39 0.72 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 410.08 15.07 6.18 6.18 Total: -1.00 -34.42 410.08 -9.05 -43.47 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -8.36 Total: 7.42 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.40 Total: 5.98 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -0.34 Total: -63.38 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.11 Total: -16.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.42 -9.05 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974865692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.569 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds