Wall clock time and date at job start Wed Apr 1 2020 05:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42907 * 109.47138 * 2 1 4 4 C 1.35672 * 116.99995 * 180.02562 * 3 2 1 5 5 C 1.38922 * 119.68784 * 179.97438 * 4 3 2 6 6 C 1.38373 * 119.11324 * 179.97438 * 5 4 3 7 7 C 1.38831 * 118.48732 * 359.73311 * 6 5 4 8 8 C 1.38038 * 119.28598 * 0.54773 * 7 6 5 9 9 C 1.50698 * 119.58283 * 179.70948 * 8 7 6 10 10 C 1.50704 * 109.47287 * 124.72752 * 9 8 7 11 11 O 1.21280 * 119.99618 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99784 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99504 * 180.02562 * 12 10 9 14 14 H 1.09002 * 110.92095 * 322.55197 * 13 12 10 15 15 C 1.54914 * 111.00533 * 86.45456 * 13 12 10 16 16 N 1.47430 * 104.83161 * 81.06122 * 15 13 12 17 17 C 1.36931 * 125.64747 * 204.09249 * 16 15 13 18 18 H 1.08002 * 120.00098 * 180.02562 * 17 16 15 19 19 C 1.38812 * 120.00429 * 0.02792 * 17 16 15 20 20 N 1.31624 * 119.99535 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00187 * 180.27849 * 19 17 16 22 22 H 1.48497 * 109.47173 * 179.72427 * 21 19 17 23 23 H 1.48506 * 109.46866 * 299.71963 * 21 19 17 24 24 H 1.48501 * 109.47438 * 59.72083 * 21 19 17 25 25 C 1.47026 * 108.70046 * 24.35988 * 16 15 13 26 26 C 1.54330 * 107.26465 * 358.58043 * 25 16 15 27 27 C 1.52997 * 110.84948 * 219.67046 * 26 25 16 28 28 C 1.53000 * 110.51265 * 96.45498 * 26 25 16 29 29 N 1.31970 * 120.83692 * 359.43988 * 8 7 6 30 30 H 1.08995 * 109.47096 * 60.00325 * 1 2 3 31 31 H 1.09004 * 109.47092 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46898 * 299.99635 * 1 2 3 33 33 H 1.09004 * 109.47532 * 240.00128 * 2 1 3 34 34 H 1.08997 * 109.47357 * 120.00150 * 2 1 3 35 35 H 1.08001 * 120.43953 * 359.97438 * 5 4 3 36 36 H 1.08004 * 120.75536 * 180.02562 * 6 5 4 37 37 H 1.07998 * 120.35434 * 180.28501 * 7 6 5 38 38 H 1.09009 * 109.47017 * 4.72986 * 9 8 7 39 39 H 1.09001 * 109.47709 * 244.73569 * 9 8 7 40 40 H 0.96990 * 120.00446 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.36649 * 322.22470 * 15 13 12 42 42 H 1.08996 * 110.46005 * 199.94979 * 15 13 12 43 43 H 0.97005 * 119.99717 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.88414 * 118.13083 * 25 16 15 45 45 H 1.09000 * 109.87822 * 239.29677 * 25 16 15 46 46 H 1.09002 * 109.47247 * 173.69263 * 27 26 25 47 47 H 1.09001 * 109.47766 * 293.69791 * 27 26 25 48 48 H 1.09003 * 109.46787 * 53.69846 * 27 26 25 49 49 H 1.09001 * 109.47438 * 306.49679 * 28 26 25 50 50 H 1.09003 * 109.47176 * 66.49736 * 28 26 25 51 51 H 1.09005 * 109.47163 * 186.49738 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 3.8753 2.8117 -0.0011 6 6 5.2489 2.9792 -0.0011 7 6 6.0539 1.8482 0.0051 8 6 5.4647 0.5999 -0.0004 9 6 6.3322 -0.6323 -0.0003 10 6 5.9551 -1.5121 1.1637 11 8 5.0688 -1.1722 1.9185 12 7 6.6028 -2.6767 1.3658 13 6 6.2358 -3.5322 2.4970 14 1 5.9872 -2.9334 3.3732 15 6 5.0681 -4.4784 2.1217 16 7 5.7036 -5.5917 1.3935 17 6 5.0837 -6.4090 0.4864 18 1 5.6390 -7.2003 0.0048 19 6 3.7417 -6.2205 0.1857 20 7 3.0649 -5.2564 0.7730 21 14 2.8942 -7.3404 -1.0459 22 1 1.4718 -6.9372 -1.1844 23 1 3.5708 -7.2292 -2.3632 24 1 2.9665 -8.7450 -0.5692 25 6 7.1115 -5.6830 1.8073 26 6 7.3665 -4.5449 2.8181 27 6 8.7407 -3.9122 2.5904 28 6 7.2382 -5.0628 4.2520 29 7 4.1512 0.4719 -0.0004 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.2194 3.6697 -0.0015 36 1 5.6848 3.9674 -0.0011 37 1 7.1297 1.9440 0.0099 38 1 7.3785 -0.3400 0.0892 39 1 6.1863 -1.1795 -0.9316 40 1 7.3118 -2.9483 0.7623 41 1 4.3540 -3.9634 1.4791 42 1 4.5723 -4.8465 3.0199 43 1 2.1270 -5.1249 0.5632 44 1 7.2976 -6.6482 2.2780 45 1 7.7612 -5.5592 0.9409 46 1 8.8523 -3.0428 3.2383 47 1 9.5187 -4.6399 2.8215 48 1 8.8303 -3.6031 1.5490 49 1 6.2756 -5.5594 4.3743 50 1 8.0411 -5.7714 4.4556 51 1 7.3066 -4.2265 4.9478 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974865692.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:26 Heat of formation + Delta-G solvation = -37.417493 kcal Electronic energy + Delta-G solvation = -31897.669387 eV Core-core repulsion = 27797.200063 eV Total energy + Delta-G solvation = -4100.469324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72984 -40.99882 -39.53313 -38.78387 -35.64635 -34.43948 -34.00731 -33.14623 -32.59498 -32.05158 -30.04862 -28.84015 -27.87050 -27.34308 -25.25948 -24.79877 -23.72391 -23.14695 -22.19067 -21.17062 -20.07429 -19.26333 -18.69044 -18.14275 -17.54486 -17.28993 -17.21827 -16.84427 -16.62403 -15.95742 -15.60701 -15.49383 -15.20120 -15.01424 -14.90567 -14.63975 -14.51513 -14.04961 -13.90053 -13.75389 -13.64104 -13.46585 -13.35486 -13.03782 -13.00306 -12.98096 -12.80630 -12.73512 -12.60695 -12.54129 -12.48610 -12.16421 -11.77297 -11.75363 -11.73072 -11.40379 -11.32822 -10.85817 -10.77793 -10.69053 -10.39891 -9.85552 -9.38290 -8.83414 -7.74015 -5.19715 0.17737 0.44620 1.42288 1.45559 1.52059 1.83149 2.08688 2.34405 2.48438 2.90453 3.16440 3.34716 3.60076 3.70960 3.81545 3.97657 3.98894 4.03141 4.05659 4.10292 4.16141 4.22985 4.36957 4.39780 4.44150 4.51402 4.53084 4.57978 4.75384 4.81561 4.83922 4.85599 4.86456 4.91013 4.94291 5.03312 5.06304 5.12709 5.13722 5.22562 5.26276 5.34462 5.35699 5.49097 5.56088 5.60293 5.75989 5.87563 6.27106 6.33411 6.75134 7.04513 7.09945 7.48571 7.80703 8.44543 9.25451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008613 B = 0.004047 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.983615 B = 6916.474183 C = 9247.561179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 O -0.319 6.319 4 C 0.286 3.714 5 C -0.199 4.199 6 C -0.036 4.036 7 C -0.195 4.195 8 C 0.156 3.844 9 C -0.086 4.086 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.696 5.696 13 C 0.141 3.859 14 H 0.071 0.929 15 C 0.157 3.843 16 N -0.617 5.617 17 C -0.235 4.235 18 H 0.084 0.916 19 C -0.067 4.067 20 N -0.946 5.946 21 Si 0.974 3.026 22 H -0.300 1.300 23 H -0.274 1.274 24 H -0.277 1.277 25 C 0.138 3.862 26 C -0.073 4.073 27 C -0.123 4.123 28 C -0.127 4.127 29 N -0.550 5.550 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.113 0.887 40 H 0.408 0.592 41 H 0.067 0.933 42 H -0.024 1.024 43 H 0.241 0.759 44 H 0.023 0.977 45 H 0.038 0.962 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.080 0.920 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 15.869 -1.344 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 O -0.227 6.227 4 C 0.107 3.893 5 C -0.220 4.220 6 C -0.061 4.061 7 C -0.215 4.215 8 C 0.019 3.981 9 C -0.126 4.126 10 C 0.298 3.702 11 O -0.455 6.455 12 N -0.348 5.348 13 C 0.035 3.965 14 H 0.089 0.911 15 C 0.030 3.970 16 N -0.343 5.343 17 C -0.364 4.364 18 H 0.102 0.898 19 C -0.259 4.259 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.226 1.226 23 H -0.200 1.200 24 H -0.204 1.204 25 C 0.013 3.987 26 C -0.074 4.074 27 C -0.180 4.180 28 C -0.185 4.185 29 N -0.274 5.274 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.176 0.824 36 H 0.204 0.796 37 H 0.196 0.804 38 H 0.178 0.822 39 H 0.131 0.869 40 H 0.245 0.755 41 H 0.085 0.915 42 H -0.007 1.007 43 H 0.050 0.950 44 H 0.041 0.959 45 H 0.056 0.944 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.083 0.917 49 H 0.048 0.952 50 H 0.099 0.901 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.590 15.404 -0.903 18.714 hybrid contribution -0.887 -0.862 -0.623 1.385 sum 9.702 14.542 -1.526 17.548 Atomic orbital electron populations 1.21767 0.90512 1.03624 1.03869 1.22439 0.96456 0.80554 1.00602 1.86140 1.17787 1.30594 1.88217 1.20299 0.84041 0.91017 0.93923 1.21414 0.97551 0.94652 1.08349 1.21867 0.91135 1.01035 0.92016 1.22189 1.03330 0.91141 1.04803 1.20667 0.88112 0.95390 0.93908 1.20755 1.01769 0.92467 0.97604 1.20868 0.81039 0.81873 0.86375 1.90697 1.31546 1.74382 1.48908 1.45656 1.38912 1.19815 1.30412 1.22036 0.95643 0.90430 0.88434 0.91089 1.21901 0.93773 0.87976 0.93338 1.44676 1.06946 1.35363 1.47296 1.19398 0.93135 1.08997 1.14904 0.89819 1.25610 0.97439 1.00454 1.02406 1.70148 1.08094 1.34414 1.46889 0.85211 0.76974 0.78349 0.79171 1.22647 1.20021 1.20357 1.21656 0.85423 0.96262 0.95320 1.21820 0.95709 0.93836 0.96042 1.21681 0.93156 1.00933 1.02237 1.21700 1.01420 1.01359 0.93983 1.67022 1.07696 1.34552 1.18114 0.90271 0.89885 0.91050 0.93450 0.94729 0.82412 0.79613 0.80430 0.82226 0.86898 0.75464 0.91504 1.00658 0.94962 0.95937 0.94438 0.91378 0.90522 0.91750 0.95224 0.90105 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 10.28 71.98 0.74 -3.12 16 2 C 0.08 2.72 6.03 71.98 0.43 3.16 16 3 O -0.32 -11.19 10.12 -89.89 -0.91 -12.10 16 4 C 0.29 9.75 7.49 84.79 0.63 10.38 16 5 C -0.20 -4.85 10.04 22.47 0.23 -4.62 16 6 C -0.04 -0.63 10.17 22.44 0.23 -0.40 16 7 C -0.19 -3.84 9.70 22.36 0.22 -3.62 16 8 C 0.16 4.57 5.76 42.49 0.24 4.81 16 9 C -0.09 -2.20 6.10 29.10 0.18 -2.02 16 10 C 0.51 18.64 7.76 87.66 0.68 19.32 16 11 O -0.58 -27.18 15.08 -3.03 -0.05 -27.22 16 12 N -0.70 -23.65 4.69 -435.95 -2.05 -25.69 16 13 C 0.14 5.56 2.56 46.38 0.12 5.68 16 14 H 0.07 2.96 7.63 -2.39 -0.02 2.94 16 15 C 0.16 8.26 5.27 86.86 0.46 8.72 16 16 N -0.62 -31.69 3.39 -691.96 -2.35 -34.04 16 17 C -0.24 -13.29 10.27 84.03 0.86 -12.43 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 20 N -0.95 -59.90 10.09 21.65 0.22 -59.68 16 21 Si 0.97 47.17 29.55 68.60 2.03 49.19 16 22 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 23 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 25 C 0.14 5.36 6.42 86.73 0.56 5.92 16 26 C -0.07 -2.29 0.81 -50.99 -0.04 -2.33 16 27 C -0.12 -2.60 8.08 71.98 0.58 -2.02 16 28 C -0.13 -3.71 8.39 71.98 0.60 -3.10 16 29 N -0.55 -20.63 8.08 -297.00 -2.40 -23.03 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.82 8.10 -2.38 -0.02 1.80 16 34 H 0.03 1.50 8.10 -2.39 -0.02 1.48 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 36 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.18 1.87 7.94 -2.91 -0.02 1.85 16 38 H 0.16 2.22 7.86 -2.38 -0.02 2.21 16 39 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 40 H 0.41 11.33 6.88 -92.72 -0.64 10.70 16 41 H 0.07 4.20 5.88 -2.39 -0.01 4.19 16 42 H -0.02 -1.44 7.81 -2.39 -0.02 -1.46 16 43 H 0.24 15.11 8.31 -92.70 -0.77 14.34 16 44 H 0.02 0.89 7.84 -2.39 -0.02 0.87 16 45 H 0.04 1.35 7.77 -2.39 -0.02 1.33 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.24 6.36 -2.39 -0.02 1.22 16 49 H 0.03 1.05 7.58 -2.39 -0.02 1.03 16 50 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -85.61 410.08 1.97 -83.64 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: 0.28 Total: 28.05 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 7.19 Total: 20.88 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -6.58 Total: -142.45 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.96 Total: -39.32 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -85.61 1.97 -83.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974865692.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.227 kcal (2) G-P(sol) polarization free energy of solvation -85.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds