Wall clock time and date at job start Wed Apr 1 2020 05:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46823 * 2 1 4 4 C 1.35681 * 116.99737 * 179.97438 * 3 2 1 5 5 C 1.38917 * 119.68327 * 179.97438 * 4 3 2 6 6 C 1.38379 * 119.11017 * 179.97438 * 5 4 3 7 7 C 1.38831 * 118.48699 * 359.73819 * 6 5 4 8 8 C 1.38046 * 119.28668 * 0.54409 * 7 6 5 9 9 C 1.50702 * 119.58412 * 179.71379 * 8 7 6 10 10 C 1.50701 * 109.47292 * 124.73061 * 9 8 7 11 11 O 1.21285 * 119.99809 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00082 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00233 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.88644 * 31.11989 * 13 12 10 15 15 C 1.54909 * 111.00777 * 267.19537 * 13 12 10 16 16 N 1.47743 * 104.83995 * 279.01998 * 15 13 12 17 17 C 1.36946 * 125.82120 * 155.82347 * 16 15 13 18 18 H 1.08000 * 119.99920 * 179.90231 * 17 16 15 19 19 C 1.38814 * 119.99867 * 359.91271 * 17 16 15 20 20 N 1.31617 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47105 * 89.99400 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99958 * 21 19 17 24 24 H 1.48502 * 109.47052 * 329.99719 * 21 19 17 25 25 C 1.47020 * 108.53125 * 335.74644 * 16 15 13 26 26 C 1.54324 * 107.39983 * 1.18235 * 25 16 15 27 27 C 1.53006 * 110.71890 * 140.47837 * 26 25 16 28 28 C 1.52997 * 110.72116 * 263.75099 * 26 25 16 29 29 N 1.31967 * 120.83800 * 359.44370 * 8 7 6 30 30 H 1.09005 * 109.46972 * 300.00370 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00333 * 1 2 3 32 32 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47237 * 239.99612 * 2 1 3 34 34 H 1.09004 * 109.46770 * 119.99363 * 2 1 3 35 35 H 1.08001 * 120.44244 * 0.02562 * 5 4 3 36 36 H 1.07995 * 120.75830 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.35819 * 180.28308 * 7 6 5 38 38 H 1.08997 * 109.46819 * 4.72717 * 9 8 7 39 39 H 1.09003 * 109.46915 * 244.73053 * 9 8 7 40 40 H 0.97009 * 119.99977 * 359.97438 * 12 10 9 41 41 H 1.09003 * 110.36363 * 37.77323 * 15 13 12 42 42 H 1.08996 * 110.37070 * 159.98163 * 15 13 12 43 43 H 0.96998 * 119.99524 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.88367 * 241.68734 * 25 16 15 45 45 H 1.09000 * 109.88319 * 120.67352 * 25 16 15 46 46 H 1.08993 * 109.46725 * 61.45577 * 27 26 25 47 47 H 1.09002 * 109.46930 * 181.45406 * 27 26 25 48 48 H 1.08996 * 109.47021 * 301.45292 * 27 26 25 49 49 H 1.09003 * 109.46999 * 58.54953 * 28 26 25 50 50 H 1.08997 * 109.47276 * 178.54649 * 28 26 25 51 51 H 1.08996 * 109.47248 * 298.55140 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8118 0.0000 6 6 5.2489 2.9793 0.0011 7 6 6.0539 1.8483 0.0083 8 6 5.4647 0.5999 0.0026 9 6 6.3323 -0.6323 0.0038 10 6 5.9541 -1.5118 1.1676 11 8 5.0671 -1.1717 1.9217 12 7 6.6016 -2.6762 1.3706 13 6 6.2337 -3.5315 2.5016 14 1 5.1741 -3.4309 2.7364 15 6 7.1097 -3.2207 3.7409 16 7 8.3723 -3.9507 3.5045 17 6 9.5913 -3.6397 4.0455 18 1 10.4565 -4.2413 3.8088 19 6 9.7149 -2.5513 4.8981 20 7 8.6606 -1.8180 5.1863 21 14 11.3776 -2.1275 5.6366 22 1 12.0940 -1.1883 4.7366 23 1 11.1819 -1.4897 6.9633 24 1 12.1786 -3.3676 5.7968 25 6 8.1007 -5.0703 2.5911 26 6 6.6032 -5.0124 2.2225 27 6 6.3959 -5.3528 0.7453 28 6 5.7892 -5.9510 3.1153 29 7 4.1512 0.4719 0.0015 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2193 3.6697 -0.0004 36 1 5.6847 3.9674 0.0004 37 1 7.1296 1.9440 0.0139 38 1 7.3784 -0.3400 0.0940 39 1 6.1870 -1.1797 -0.9276 40 1 7.3109 -2.9484 0.7673 41 1 7.2999 -2.1497 3.8120 42 1 6.6245 -3.5801 4.6483 43 1 8.7471 -1.0573 5.7818 44 1 8.3243 -6.0153 3.0863 45 1 8.7080 -4.9706 1.6915 46 1 6.7446 -6.3676 0.5540 47 1 5.3360 -5.2807 0.5012 48 1 6.9592 -4.6526 0.1285 49 1 5.9274 -5.6700 4.1594 50 1 4.7334 -5.8749 2.8554 51 1 6.1268 -6.9767 2.9674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974865695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:30 Heat of formation + Delta-G solvation = -13.868054 kcal Electronic energy + Delta-G solvation = -31570.651074 eV Core-core repulsion = 27471.202930 eV Total energy + Delta-G solvation = -4099.448144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.67826 -39.55436 -38.25552 -37.51115 -33.77111 -33.04451 -32.91241 -32.18853 -31.02068 -30.67703 -28.60979 -27.60855 -26.56118 -25.58339 -24.04898 -23.39606 -22.62288 -22.06762 -20.49369 -19.69664 -18.65110 -18.22206 -16.91729 -16.69062 -16.42689 -16.12269 -15.96728 -15.71080 -14.84771 -14.54689 -14.18875 -14.05512 -13.91396 -13.77143 -13.70057 -13.26639 -13.20906 -12.96650 -12.76259 -12.62951 -12.33981 -12.17795 -12.01615 -11.92610 -11.76881 -11.68744 -11.51490 -11.26222 -11.14293 -10.96399 -10.76737 -10.70624 -10.37021 -10.18428 -9.93275 -9.80004 -9.77110 -9.66835 -9.52144 -9.27136 -8.67563 -8.38261 -8.25451 -6.79779 -5.62223 -3.05150 1.16000 1.36951 3.05293 3.20964 3.39281 3.44590 3.47119 3.58935 3.96067 4.15399 4.49190 4.74090 4.96934 4.97348 5.02896 5.05230 5.10909 5.17638 5.25536 5.29474 5.32870 5.37938 5.43304 5.49574 5.53387 5.64452 5.68223 5.73570 5.79763 5.84442 5.89048 5.90578 6.03302 6.06327 6.13127 6.20358 6.21607 6.29916 6.43593 6.47570 6.50661 6.64552 6.72429 6.81253 7.05045 7.31279 7.52604 7.63351 7.89637 7.98763 8.11808 8.39786 8.82959 9.22500 9.84466 10.49377 11.40454 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003237 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.586789 B = 8647.343434 C =10302.883559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.311 6.311 4 C 0.325 3.675 5 C -0.198 4.198 6 C -0.042 4.042 7 C -0.205 4.205 8 C 0.192 3.808 9 C -0.096 4.096 10 C 0.520 3.480 11 O -0.528 6.528 12 N -0.704 5.704 13 C 0.127 3.873 14 H 0.086 0.914 15 C 0.146 3.854 16 N -0.601 5.601 17 C -0.224 4.224 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.917 5.917 21 Si 0.911 3.089 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.143 3.857 26 C -0.088 4.088 27 C -0.129 4.129 28 C -0.128 4.128 29 N -0.510 5.510 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.395 0.605 41 H 0.111 0.889 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.052 0.948 47 H 0.052 0.948 48 H 0.052 0.948 49 H 0.063 0.937 50 H 0.049 0.951 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 2.949 -15.007 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.219 6.219 4 C 0.145 3.855 5 C -0.219 4.219 6 C -0.068 4.068 7 C -0.225 4.225 8 C 0.054 3.946 9 C -0.136 4.136 10 C 0.305 3.695 11 O -0.404 6.404 12 N -0.355 5.355 13 C 0.021 3.979 14 H 0.104 0.896 15 C 0.020 3.980 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.565 5.565 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.017 3.983 26 C -0.089 4.089 27 C -0.187 4.187 28 C -0.186 4.186 29 N -0.233 5.233 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.155 0.845 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.230 0.770 41 H 0.129 0.871 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.071 0.929 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.243 2.693 -14.289 18.380 hybrid contribution 1.746 0.627 0.281 1.876 sum -9.497 3.320 -14.008 17.247 Atomic orbital electron populations 1.21812 0.93335 1.02761 1.02966 1.22582 0.94311 0.81059 1.02932 1.86186 1.17008 1.30768 1.87893 1.19718 0.83990 0.89771 0.92010 1.21004 0.95873 0.95654 1.09378 1.21312 0.92291 0.99243 0.93916 1.21787 1.01469 0.92544 1.06680 1.20187 0.88581 0.93549 0.92247 1.20668 0.99843 0.93556 0.99552 1.19958 0.82236 0.81504 0.85825 1.90710 1.30871 1.71974 1.46866 1.45737 1.38323 1.20892 1.30511 1.22443 0.99588 0.87578 0.88264 0.89600 1.22339 0.83950 1.01405 0.90268 1.44534 1.05563 1.29469 1.53138 1.19020 0.85261 1.09327 1.21612 0.90611 1.24786 0.97373 0.98268 1.00082 1.69813 1.26987 1.19958 1.39711 0.86125 0.83133 0.78047 0.78474 1.21692 1.21722 1.20828 1.21395 0.91447 0.92066 0.93382 1.21842 0.96976 0.94931 0.95144 1.21698 1.01090 1.00761 0.95129 1.21683 0.98527 0.98160 1.00210 1.67043 1.05813 1.32930 1.17492 0.91725 0.91970 0.90413 0.91923 0.90980 0.84486 0.84231 0.84474 0.87081 0.87417 0.77019 0.87098 0.96336 0.93745 0.96015 0.96113 0.92886 0.92931 0.92870 0.91838 0.93163 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.07 0.84 6.03 37.16 0.22 1.06 16 3 O -0.31 -4.44 10.12 -18.74 -0.19 -4.63 16 4 C 0.32 4.88 7.49 -17.12 -0.13 4.76 16 5 C -0.20 -2.48 10.04 -39.28 -0.39 -2.88 16 6 C -0.04 -0.47 10.17 -39.31 -0.40 -0.87 16 7 C -0.20 -2.56 9.71 -39.43 -0.38 -2.94 16 8 C 0.19 2.82 5.76 -82.60 -0.48 2.35 16 9 C -0.10 -1.27 6.10 -29.03 -0.18 -1.45 16 10 C 0.52 9.22 7.76 -10.99 -0.09 9.14 16 11 O -0.53 -11.57 14.97 5.55 0.08 -11.49 16 12 N -0.70 -12.03 4.51 -51.73 -0.23 -12.26 16 13 C 0.13 2.44 2.67 -65.79 -0.18 2.26 16 14 H 0.09 1.73 7.44 -51.93 -0.39 1.34 16 15 C 0.15 3.56 5.29 -2.35 -0.01 3.55 16 16 N -0.60 -14.83 3.41 -169.81 -0.58 -15.40 16 17 C -0.22 -6.10 10.28 -15.05 -0.15 -6.26 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 20 N -0.92 -26.99 10.11 55.49 0.56 -26.43 16 21 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.14 2.83 6.40 -3.06 -0.02 2.81 16 26 C -0.09 -1.45 0.80 -152.67 -0.12 -1.57 16 27 C -0.13 -1.69 8.16 37.16 0.30 -1.38 16 28 C -0.13 -1.96 8.44 37.16 0.31 -1.65 16 29 N -0.51 -8.22 8.08 -9.55 -0.08 -8.30 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 34 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 35 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.14 1.40 7.94 -52.49 -0.42 0.98 16 38 H 0.11 1.26 7.86 -51.93 -0.41 0.85 16 39 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.40 5.95 7.13 -40.82 -0.29 5.66 16 41 H 0.11 3.16 5.88 -51.93 -0.31 2.86 16 42 H 0.02 0.50 7.72 -51.93 -0.40 0.10 16 43 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 45 H 0.02 0.40 7.82 -51.93 -0.41 -0.01 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.65 6.34 -51.93 -0.33 0.33 16 49 H 0.06 1.10 7.45 -51.93 -0.39 0.71 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 409.94 15.07 6.18 6.18 Total: -1.00 -34.12 409.94 -9.03 -43.16 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -8.35 Total: 6.63 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.40 Total: 5.56 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.33 Total: -62.40 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.11 Total: -16.12 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.12 -9.03 -43.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974865695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.289 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds