Wall clock time and date at job start Wed Apr 1 2020 05:00:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 O 1.42906 * 109.46823 * 2 1
4 4 C 1.35681 * 116.99737 * 179.97438 * 3 2 1
5 5 C 1.38917 * 119.68327 * 179.97438 * 4 3 2
6 6 C 1.38379 * 119.11017 * 179.97438 * 5 4 3
7 7 C 1.38831 * 118.48699 * 359.73819 * 6 5 4
8 8 C 1.38046 * 119.28668 * 0.54409 * 7 6 5
9 9 C 1.50702 * 119.58412 * 179.71379 * 8 7 6
10 10 C 1.50701 * 109.47292 * 124.73061 * 9 8 7
11 11 O 1.21285 * 119.99809 * 0.02562 * 10 9 8
12 12 N 1.34772 * 120.00082 * 180.02562 * 10 9 8
13 13 C 1.46492 * 120.00233 * 180.02562 * 12 10 9
14 14 H 1.09001 * 110.88644 * 31.11989 * 13 12 10
15 15 C 1.54909 * 111.00777 * 267.19537 * 13 12 10
16 16 N 1.47743 * 104.83995 * 279.01998 * 15 13 12
17 17 C 1.36946 * 125.82120 * 155.82347 * 16 15 13
18 18 H 1.08000 * 119.99920 * 179.90231 * 17 16 15
19 19 C 1.38814 * 119.99867 * 359.91271 * 17 16 15
20 20 N 1.31617 * 119.99930 * 359.97438 * 19 17 16
21 21 Si 1.86797 * 119.99829 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.47105 * 89.99400 * 21 19 17
23 23 H 1.48501 * 109.47179 * 209.99958 * 21 19 17
24 24 H 1.48502 * 109.47052 * 329.99719 * 21 19 17
25 25 C 1.47020 * 108.53125 * 335.74644 * 16 15 13
26 26 C 1.54324 * 107.39983 * 1.18235 * 25 16 15
27 27 C 1.53006 * 110.71890 * 140.47837 * 26 25 16
28 28 C 1.52997 * 110.72116 * 263.75099 * 26 25 16
29 29 N 1.31967 * 120.83800 * 359.44370 * 8 7 6
30 30 H 1.09005 * 109.46972 * 300.00370 * 1 2 3
31 31 H 1.09001 * 109.47192 * 60.00333 * 1 2 3
32 32 H 1.09000 * 109.47031 * 180.02562 * 1 2 3
33 33 H 1.08992 * 109.47237 * 239.99612 * 2 1 3
34 34 H 1.09004 * 109.46770 * 119.99363 * 2 1 3
35 35 H 1.08001 * 120.44244 * 0.02562 * 5 4 3
36 36 H 1.07995 * 120.75830 * 179.97438 * 6 5 4
37 37 H 1.07996 * 120.35819 * 180.28308 * 7 6 5
38 38 H 1.08997 * 109.46819 * 4.72717 * 9 8 7
39 39 H 1.09003 * 109.46915 * 244.73053 * 9 8 7
40 40 H 0.97009 * 119.99977 * 359.97438 * 12 10 9
41 41 H 1.09003 * 110.36363 * 37.77323 * 15 13 12
42 42 H 1.08996 * 110.37070 * 159.98163 * 15 13 12
43 43 H 0.96998 * 119.99524 * 180.02562 * 20 19 17
44 44 H 1.09002 * 109.88367 * 241.68734 * 25 16 15
45 45 H 1.09000 * 109.88319 * 120.67352 * 25 16 15
46 46 H 1.08993 * 109.46725 * 61.45577 * 27 26 25
47 47 H 1.09002 * 109.46930 * 181.45406 * 27 26 25
48 48 H 1.08996 * 109.47021 * 301.45292 * 27 26 25
49 49 H 1.09003 * 109.46999 * 58.54953 * 28 26 25
50 50 H 1.08997 * 109.47276 * 178.54649 * 28 26 25
51 51 H 1.08996 * 109.47248 * 298.55140 * 28 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3474 0.0000
4 6 3.3514 1.5251 0.0005
5 6 3.8753 2.8118 0.0000
6 6 5.2489 2.9793 0.0011
7 6 6.0539 1.8483 0.0083
8 6 5.4647 0.5999 0.0026
9 6 6.3323 -0.6323 0.0038
10 6 5.9541 -1.5118 1.1676
11 8 5.0671 -1.1717 1.9217
12 7 6.6016 -2.6762 1.3706
13 6 6.2337 -3.5315 2.5016
14 1 5.1741 -3.4309 2.7364
15 6 7.1097 -3.2207 3.7409
16 7 8.3723 -3.9507 3.5045
17 6 9.5913 -3.6397 4.0455
18 1 10.4565 -4.2413 3.8088
19 6 9.7149 -2.5513 4.8981
20 7 8.6606 -1.8180 5.1863
21 14 11.3776 -2.1275 5.6366
22 1 12.0940 -1.1883 4.7366
23 1 11.1819 -1.4897 6.9633
24 1 12.1786 -3.3676 5.7968
25 6 8.1007 -5.0703 2.5911
26 6 6.6032 -5.0124 2.2225
27 6 6.3959 -5.3528 0.7453
28 6 5.7892 -5.9510 3.1153
29 7 4.1512 0.4719 0.0015
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 1.8933 -0.5139 -0.8899
34 1 1.8933 -0.5138 0.8901
35 1 3.2193 3.6697 -0.0004
36 1 5.6847 3.9674 0.0004
37 1 7.1296 1.9440 0.0139
38 1 7.3784 -0.3400 0.0940
39 1 6.1870 -1.1797 -0.9276
40 1 7.3109 -2.9484 0.7673
41 1 7.2999 -2.1497 3.8120
42 1 6.6245 -3.5801 4.6483
43 1 8.7471 -1.0573 5.7818
44 1 8.3243 -6.0153 3.0863
45 1 8.7080 -4.9706 1.6915
46 1 6.7446 -6.3676 0.5540
47 1 5.3360 -5.2807 0.5012
48 1 6.9592 -4.6526 0.1285
49 1 5.9274 -5.6700 4.1594
50 1 4.7334 -5.8749 2.8554
51 1 6.1268 -6.9767 2.9674
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000974865695.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:29
Heat of formation + Delta-G solvation = -37.206900 kcal
Electronic energy + Delta-G solvation = -31571.663122 eV
Core-core repulsion = 27471.202930 eV
Total energy + Delta-G solvation = -4100.460192 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-41.73902 -40.99894 -39.53170 -38.78195 -35.62337 -34.45190 -34.02081 -33.13489
-32.58299 -32.01751 -30.06279 -28.84944 -27.88016 -27.33767 -25.23985 -24.78600
-23.73883 -23.11720 -22.17426 -21.21328 -20.07533 -19.26788 -18.67903 -18.15619
-17.61240 -17.24686 -17.18234 -16.87797 -16.48238 -16.09914 -15.64307 -15.41864
-15.12551 -15.01997 -14.90129 -14.66034 -14.45861 -14.17337 -13.92107 -13.71638
-13.63373 -13.41252 -13.34179 -13.07732 -12.99529 -12.92454 -12.88450 -12.73405
-12.58176 -12.53724 -12.44365 -12.09667 -11.76458 -11.73271 -11.69560 -11.41501
-11.34239 -10.87877 -10.78354 -10.70213 -10.47108 -9.85868 -9.39041 -8.82821
-7.73853 -5.19004 0.15391 0.40563 1.45816 1.47680 1.56398 1.82357
2.09390 2.31295 2.50286 2.87336 3.13560 3.35891 3.60715 3.70431
3.80532 3.99337 4.00910 4.05210 4.07825 4.09831 4.17620 4.20923
4.36450 4.43963 4.44743 4.49386 4.52452 4.57854 4.73158 4.81439
4.83935 4.85030 4.90314 4.92780 4.94422 5.04143 5.05779 5.11877
5.18271 5.22067 5.26168 5.33774 5.34269 5.50759 5.54823 5.55780
5.74979 5.85982 6.28517 6.31952 6.73362 6.96667 7.10346 7.45707
7.80497 8.45251 9.26733
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010561 B = 0.003237 C = 0.002717
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2650.586789 B = 8647.343434 C =10302.883559
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.068 3.932
3 O -0.319 6.319
4 C 0.293 3.707
5 C -0.201 4.201
6 C -0.038 4.038
7 C -0.207 4.207
8 C 0.161 3.839
9 C -0.085 4.085
10 C 0.513 3.487
11 O -0.577 6.577
12 N -0.695 5.695
13 C 0.140 3.860
14 H 0.072 0.928
15 C 0.156 3.844
16 N -0.617 5.617
17 C -0.230 4.230
18 H 0.085 0.915
19 C -0.069 4.069
20 N -0.949 5.949
21 Si 0.977 3.023
22 H -0.283 1.283
23 H -0.302 1.302
24 H -0.269 1.269
25 C 0.139 3.861
26 C -0.074 4.074
27 C -0.122 4.122
28 C -0.127 4.127
29 N -0.537 5.537
30 H 0.062 0.938
31 H 0.074 0.926
32 H 0.095 0.905
33 H 0.061 0.939
34 H 0.041 0.959
35 H 0.159 0.841
36 H 0.179 0.821
37 H 0.162 0.838
38 H 0.134 0.866
39 H 0.139 0.861
40 H 0.408 0.592
41 H 0.068 0.932
42 H -0.021 1.021
43 H 0.241 0.759
44 H 0.023 0.977
45 H 0.039 0.961
46 H 0.075 0.925
47 H 0.062 0.938
48 H 0.062 0.938
49 H 0.031 0.969
50 H 0.067 0.933
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.101 2.594 -17.669 20.043
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.008 4.008
3 O -0.228 6.228
4 C 0.114 3.886
5 C -0.221 4.221
6 C -0.063 4.063
7 C -0.227 4.227
8 C 0.024 3.976
9 C -0.125 4.125
10 C 0.300 3.700
11 O -0.456 6.456
12 N -0.347 5.347
13 C 0.034 3.966
14 H 0.090 0.910
15 C 0.029 3.971
16 N -0.343 5.343
17 C -0.359 4.359
18 H 0.103 0.897
19 C -0.261 4.261
20 N -0.599 5.599
21 Si 0.806 3.194
22 H -0.210 1.210
23 H -0.229 1.229
24 H -0.194 1.194
25 C 0.014 3.986
26 C -0.075 4.075
27 C -0.180 4.180
28 C -0.184 4.184
29 N -0.260 5.260
30 H 0.081 0.919
31 H 0.093 0.907
32 H 0.114 0.886
33 H 0.079 0.921
34 H 0.059 0.941
35 H 0.177 0.823
36 H 0.196 0.804
37 H 0.180 0.820
38 H 0.152 0.848
39 H 0.157 0.843
40 H 0.245 0.755
41 H 0.086 0.914
42 H -0.003 1.003
43 H 0.051 0.949
44 H 0.041 0.959
45 H 0.057 0.943
46 H 0.094 0.906
47 H 0.081 0.919
48 H 0.081 0.919
49 H 0.050 0.950
50 H 0.086 0.914
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.228 2.293 -17.007 19.977
hybrid contribution 1.447 0.720 1.146 1.981
sum -8.781 3.012 -15.861 18.378
Atomic orbital electron populations
1.21808 0.90623 1.04108 1.03476 1.22620 0.96371 0.80468 1.01300
1.86176 1.17093 1.31372 1.88129 1.20174 0.84211 0.90766 0.93452
1.21388 0.97014 0.95336 1.08352 1.21801 0.91642 1.00685 0.92152
1.22161 1.02939 0.92127 1.05445 1.20553 0.88477 0.94939 0.93585
1.20713 1.00679 0.92634 0.98511 1.20820 0.81233 0.81506 0.86393
1.90692 1.33056 1.72952 1.48933 1.45641 1.38601 1.20701 1.29719
1.22036 0.97493 0.90053 0.87057 0.90996 1.21968 0.84932 0.98624
0.91538 1.44750 1.04798 1.31002 1.53703 1.19437 0.86496 1.08937
1.21053 0.89732 1.25614 1.00638 0.98650 1.01179 1.70128 1.29022
1.20305 1.40451 0.85093 0.79316 0.78041 0.76970 1.20973 1.22859
1.19414 1.21632 0.93938 0.90218 0.92836 1.21822 0.94745 0.92830
0.98136 1.21666 1.02179 1.02332 0.91782 1.21690 0.99651 0.99055
0.98046 1.66972 1.06756 1.33986 1.18319 0.91869 0.90698 0.88644
0.92057 0.94085 0.82348 0.80380 0.82047 0.84769 0.84343 0.75475
0.91387 1.00283 0.94892 0.95927 0.94308 0.90613 0.91884 0.91864
0.95003 0.91399 0.90353
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16
2 C 0.07 1.78 6.03 71.98 0.43 2.21 16
3 O -0.32 -9.40 10.12 -89.99 -0.91 -10.31 16
4 C 0.29 8.97 7.49 84.79 0.63 9.60 16
5 C -0.20 -4.82 10.04 22.47 0.23 -4.59 16
6 C -0.04 -0.77 10.17 22.45 0.23 -0.54 16
7 C -0.21 -4.82 9.71 22.37 0.22 -4.60 16
8 C 0.16 4.67 5.76 42.49 0.24 4.91 16
9 C -0.09 -2.16 6.10 29.10 0.18 -1.98 16
10 C 0.51 18.36 7.76 87.66 0.68 19.04 16
11 O -0.58 -26.50 14.97 -3.04 -0.05 -26.55 16
12 N -0.70 -23.51 4.51 -435.98 -1.97 -25.48 16
13 C 0.14 5.49 2.67 46.39 0.12 5.62 16
14 H 0.07 3.04 7.44 -2.39 -0.02 3.02 16
15 C 0.16 8.01 5.29 86.79 0.46 8.47 16
16 N -0.62 -30.88 3.41 -691.17 -2.35 -33.23 16
17 C -0.23 -12.64 10.28 84.03 0.86 -11.78 16
18 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16
19 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16
20 N -0.95 -58.47 10.11 21.65 0.22 -58.25 16
21 Si 0.98 45.88 29.55 68.60 2.03 47.91 16
22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16
23 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16
24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
25 C 0.14 5.30 6.40 86.73 0.56 5.85 16
26 C -0.07 -2.34 0.80 -50.99 -0.04 -2.38 16
27 C -0.12 -2.76 8.16 71.98 0.59 -2.17 16
28 C -0.13 -3.74 8.44 71.98 0.61 -3.13 16
29 N -0.54 -17.66 8.08 -296.98 -2.40 -20.06 16
30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16
31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16
32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
33 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16
34 H 0.04 1.30 8.10 -2.39 -0.02 1.29 16
35 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16
36 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16
37 H 0.16 2.84 7.94 -2.91 -0.02 2.82 16
38 H 0.13 2.74 7.86 -2.39 -0.02 2.72 16
39 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16
40 H 0.41 11.54 7.13 -92.70 -0.66 10.88 16
41 H 0.07 4.12 5.88 -2.39 -0.01 4.11 16
42 H -0.02 -1.19 7.72 -2.39 -0.02 -1.21 16
43 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16
44 H 0.02 0.88 7.84 -2.39 -0.02 0.86 16
45 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16
46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16
47 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
48 H 0.06 1.31 6.34 -2.39 -0.02 1.30 16
49 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16
50 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
Total: -1.00 -80.28 409.94 2.04 -78.24
By element:
Atomic # 1 Polarization: 28.22 SS G_CDS: 0.26 Total: 28.48 kcal
Atomic # 6 Polarization: 12.04 SS G_CDS: 7.20 Total: 19.24 kcal
Atomic # 7 Polarization: -130.52 SS G_CDS: -6.50 Total: -137.02 kcal
Atomic # 8 Polarization: -35.90 SS G_CDS: -0.96 Total: -36.85 kcal
Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal
Total: -80.28 2.04 -78.24 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000974865695.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.036 kcal
(2) G-P(sol) polarization free energy of solvation -80.279 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.243 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.207 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds