Wall clock time and date at job start Wed Apr 1 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42906 * 109.46823 * 2 1 4 4 C 1.35681 * 116.99737 * 179.97438 * 3 2 1 5 5 C 1.38917 * 119.68327 * 179.97438 * 4 3 2 6 6 C 1.38379 * 119.11017 * 179.97438 * 5 4 3 7 7 C 1.38831 * 118.48699 * 359.73819 * 6 5 4 8 8 C 1.38046 * 119.28668 * 0.54409 * 7 6 5 9 9 C 1.50702 * 119.58412 * 179.71379 * 8 7 6 10 10 C 1.50701 * 109.47292 * 124.73061 * 9 8 7 11 11 O 1.21285 * 119.99809 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00082 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00233 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.88644 * 31.11989 * 13 12 10 15 15 C 1.54909 * 111.00777 * 267.19537 * 13 12 10 16 16 N 1.47743 * 104.83995 * 279.01998 * 15 13 12 17 17 C 1.36946 * 125.82120 * 155.82347 * 16 15 13 18 18 H 1.08000 * 119.99920 * 179.90231 * 17 16 15 19 19 C 1.38814 * 119.99867 * 359.91271 * 17 16 15 20 20 N 1.31617 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99829 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47105 * 89.99400 * 21 19 17 23 23 H 1.48501 * 109.47179 * 209.99958 * 21 19 17 24 24 H 1.48502 * 109.47052 * 329.99719 * 21 19 17 25 25 C 1.47020 * 108.53125 * 335.74644 * 16 15 13 26 26 C 1.54324 * 107.39983 * 1.18235 * 25 16 15 27 27 C 1.53006 * 110.71890 * 140.47837 * 26 25 16 28 28 C 1.52997 * 110.72116 * 263.75099 * 26 25 16 29 29 N 1.31967 * 120.83800 * 359.44370 * 8 7 6 30 30 H 1.09005 * 109.46972 * 300.00370 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00333 * 1 2 3 32 32 H 1.09000 * 109.47031 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47237 * 239.99612 * 2 1 3 34 34 H 1.09004 * 109.46770 * 119.99363 * 2 1 3 35 35 H 1.08001 * 120.44244 * 0.02562 * 5 4 3 36 36 H 1.07995 * 120.75830 * 179.97438 * 6 5 4 37 37 H 1.07996 * 120.35819 * 180.28308 * 7 6 5 38 38 H 1.08997 * 109.46819 * 4.72717 * 9 8 7 39 39 H 1.09003 * 109.46915 * 244.73053 * 9 8 7 40 40 H 0.97009 * 119.99977 * 359.97438 * 12 10 9 41 41 H 1.09003 * 110.36363 * 37.77323 * 15 13 12 42 42 H 1.08996 * 110.37070 * 159.98163 * 15 13 12 43 43 H 0.96998 * 119.99524 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.88367 * 241.68734 * 25 16 15 45 45 H 1.09000 * 109.88319 * 120.67352 * 25 16 15 46 46 H 1.08993 * 109.46725 * 61.45577 * 27 26 25 47 47 H 1.09002 * 109.46930 * 181.45406 * 27 26 25 48 48 H 1.08996 * 109.47021 * 301.45292 * 27 26 25 49 49 H 1.09003 * 109.46999 * 58.54953 * 28 26 25 50 50 H 1.08997 * 109.47276 * 178.54649 * 28 26 25 51 51 H 1.08996 * 109.47248 * 298.55140 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8753 2.8118 0.0000 6 6 5.2489 2.9793 0.0011 7 6 6.0539 1.8483 0.0083 8 6 5.4647 0.5999 0.0026 9 6 6.3323 -0.6323 0.0038 10 6 5.9541 -1.5118 1.1676 11 8 5.0671 -1.1717 1.9217 12 7 6.6016 -2.6762 1.3706 13 6 6.2337 -3.5315 2.5016 14 1 5.1741 -3.4309 2.7364 15 6 7.1097 -3.2207 3.7409 16 7 8.3723 -3.9507 3.5045 17 6 9.5913 -3.6397 4.0455 18 1 10.4565 -4.2413 3.8088 19 6 9.7149 -2.5513 4.8981 20 7 8.6606 -1.8180 5.1863 21 14 11.3776 -2.1275 5.6366 22 1 12.0940 -1.1883 4.7366 23 1 11.1819 -1.4897 6.9633 24 1 12.1786 -3.3676 5.7968 25 6 8.1007 -5.0703 2.5911 26 6 6.6032 -5.0124 2.2225 27 6 6.3959 -5.3528 0.7453 28 6 5.7892 -5.9510 3.1153 29 7 4.1512 0.4719 0.0015 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.2193 3.6697 -0.0004 36 1 5.6847 3.9674 0.0004 37 1 7.1296 1.9440 0.0139 38 1 7.3784 -0.3400 0.0940 39 1 6.1870 -1.1797 -0.9276 40 1 7.3109 -2.9484 0.7673 41 1 7.2999 -2.1497 3.8120 42 1 6.6245 -3.5801 4.6483 43 1 8.7471 -1.0573 5.7818 44 1 8.3243 -6.0153 3.0863 45 1 8.7080 -4.9706 1.6915 46 1 6.7446 -6.3676 0.5540 47 1 5.3360 -5.2807 0.5012 48 1 6.9592 -4.6526 0.1285 49 1 5.9274 -5.6700 4.1594 50 1 4.7334 -5.8749 2.8554 51 1 6.1268 -6.9767 2.9674 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974865695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:29 Heat of formation + Delta-G solvation = -37.206900 kcal Electronic energy + Delta-G solvation = -31571.663122 eV Core-core repulsion = 27471.202930 eV Total energy + Delta-G solvation = -4100.460192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73902 -40.99894 -39.53170 -38.78195 -35.62337 -34.45190 -34.02081 -33.13489 -32.58299 -32.01751 -30.06279 -28.84944 -27.88016 -27.33767 -25.23985 -24.78600 -23.73883 -23.11720 -22.17426 -21.21328 -20.07533 -19.26788 -18.67903 -18.15619 -17.61240 -17.24686 -17.18234 -16.87797 -16.48238 -16.09914 -15.64307 -15.41864 -15.12551 -15.01997 -14.90129 -14.66034 -14.45861 -14.17337 -13.92107 -13.71638 -13.63373 -13.41252 -13.34179 -13.07732 -12.99529 -12.92454 -12.88450 -12.73405 -12.58176 -12.53724 -12.44365 -12.09667 -11.76458 -11.73271 -11.69560 -11.41501 -11.34239 -10.87877 -10.78354 -10.70213 -10.47108 -9.85868 -9.39041 -8.82821 -7.73853 -5.19004 0.15391 0.40563 1.45816 1.47680 1.56398 1.82357 2.09390 2.31295 2.50286 2.87336 3.13560 3.35891 3.60715 3.70431 3.80532 3.99337 4.00910 4.05210 4.07825 4.09831 4.17620 4.20923 4.36450 4.43963 4.44743 4.49386 4.52452 4.57854 4.73158 4.81439 4.83935 4.85030 4.90314 4.92780 4.94422 5.04143 5.05779 5.11877 5.18271 5.22067 5.26168 5.33774 5.34269 5.50759 5.54823 5.55780 5.74979 5.85982 6.28517 6.31952 6.73362 6.96667 7.10346 7.45707 7.80497 8.45251 9.26733 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010561 B = 0.003237 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.586789 B = 8647.343434 C =10302.883559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 O -0.319 6.319 4 C 0.293 3.707 5 C -0.201 4.201 6 C -0.038 4.038 7 C -0.207 4.207 8 C 0.161 3.839 9 C -0.085 4.085 10 C 0.513 3.487 11 O -0.577 6.577 12 N -0.695 5.695 13 C 0.140 3.860 14 H 0.072 0.928 15 C 0.156 3.844 16 N -0.617 5.617 17 C -0.230 4.230 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.977 3.023 22 H -0.283 1.283 23 H -0.302 1.302 24 H -0.269 1.269 25 C 0.139 3.861 26 C -0.074 4.074 27 C -0.122 4.122 28 C -0.127 4.127 29 N -0.537 5.537 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.159 0.841 36 H 0.179 0.821 37 H 0.162 0.838 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.408 0.592 41 H 0.068 0.932 42 H -0.021 1.021 43 H 0.241 0.759 44 H 0.023 0.977 45 H 0.039 0.961 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.031 0.969 50 H 0.067 0.933 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.101 2.594 -17.669 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.008 4.008 3 O -0.228 6.228 4 C 0.114 3.886 5 C -0.221 4.221 6 C -0.063 4.063 7 C -0.227 4.227 8 C 0.024 3.976 9 C -0.125 4.125 10 C 0.300 3.700 11 O -0.456 6.456 12 N -0.347 5.347 13 C 0.034 3.966 14 H 0.090 0.910 15 C 0.029 3.971 16 N -0.343 5.343 17 C -0.359 4.359 18 H 0.103 0.897 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.806 3.194 22 H -0.210 1.210 23 H -0.229 1.229 24 H -0.194 1.194 25 C 0.014 3.986 26 C -0.075 4.075 27 C -0.180 4.180 28 C -0.184 4.184 29 N -0.260 5.260 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.177 0.823 36 H 0.196 0.804 37 H 0.180 0.820 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.245 0.755 41 H 0.086 0.914 42 H -0.003 1.003 43 H 0.051 0.949 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.086 0.914 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.228 2.293 -17.007 19.977 hybrid contribution 1.447 0.720 1.146 1.981 sum -8.781 3.012 -15.861 18.378 Atomic orbital electron populations 1.21808 0.90623 1.04108 1.03476 1.22620 0.96371 0.80468 1.01300 1.86176 1.17093 1.31372 1.88129 1.20174 0.84211 0.90766 0.93452 1.21388 0.97014 0.95336 1.08352 1.21801 0.91642 1.00685 0.92152 1.22161 1.02939 0.92127 1.05445 1.20553 0.88477 0.94939 0.93585 1.20713 1.00679 0.92634 0.98511 1.20820 0.81233 0.81506 0.86393 1.90692 1.33056 1.72952 1.48933 1.45641 1.38601 1.20701 1.29719 1.22036 0.97493 0.90053 0.87057 0.90996 1.21968 0.84932 0.98624 0.91538 1.44750 1.04798 1.31002 1.53703 1.19437 0.86496 1.08937 1.21053 0.89732 1.25614 1.00638 0.98650 1.01179 1.70128 1.29022 1.20305 1.40451 0.85093 0.79316 0.78041 0.76970 1.20973 1.22859 1.19414 1.21632 0.93938 0.90218 0.92836 1.21822 0.94745 0.92830 0.98136 1.21666 1.02179 1.02332 0.91782 1.21690 0.99651 0.99055 0.98046 1.66972 1.06756 1.33986 1.18319 0.91869 0.90698 0.88644 0.92057 0.94085 0.82348 0.80380 0.82047 0.84769 0.84343 0.75475 0.91387 1.00283 0.94892 0.95927 0.94308 0.90613 0.91884 0.91864 0.95003 0.91399 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 10.28 71.98 0.74 -1.85 16 2 C 0.07 1.78 6.03 71.98 0.43 2.21 16 3 O -0.32 -9.40 10.12 -89.99 -0.91 -10.31 16 4 C 0.29 8.97 7.49 84.79 0.63 9.60 16 5 C -0.20 -4.82 10.04 22.47 0.23 -4.59 16 6 C -0.04 -0.77 10.17 22.45 0.23 -0.54 16 7 C -0.21 -4.82 9.71 22.37 0.22 -4.60 16 8 C 0.16 4.67 5.76 42.49 0.24 4.91 16 9 C -0.09 -2.16 6.10 29.10 0.18 -1.98 16 10 C 0.51 18.36 7.76 87.66 0.68 19.04 16 11 O -0.58 -26.50 14.97 -3.04 -0.05 -26.55 16 12 N -0.70 -23.51 4.51 -435.98 -1.97 -25.48 16 13 C 0.14 5.49 2.67 46.39 0.12 5.62 16 14 H 0.07 3.04 7.44 -2.39 -0.02 3.02 16 15 C 0.16 8.01 5.29 86.79 0.46 8.47 16 16 N -0.62 -30.88 3.41 -691.17 -2.35 -33.23 16 17 C -0.23 -12.64 10.28 84.03 0.86 -11.78 16 18 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 19 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 20 N -0.95 -58.47 10.11 21.65 0.22 -58.25 16 21 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 22 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 C 0.14 5.30 6.40 86.73 0.56 5.85 16 26 C -0.07 -2.34 0.80 -50.99 -0.04 -2.38 16 27 C -0.12 -2.76 8.16 71.98 0.59 -2.17 16 28 C -0.13 -3.74 8.44 71.98 0.61 -3.13 16 29 N -0.54 -17.66 8.08 -296.98 -2.40 -20.06 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 34 H 0.04 1.30 8.10 -2.39 -0.02 1.29 16 35 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.16 2.84 7.94 -2.91 -0.02 2.82 16 38 H 0.13 2.74 7.86 -2.39 -0.02 2.72 16 39 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.41 11.54 7.13 -92.70 -0.66 10.88 16 41 H 0.07 4.12 5.88 -2.39 -0.01 4.11 16 42 H -0.02 -1.19 7.72 -2.39 -0.02 -1.21 16 43 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.02 0.88 7.84 -2.39 -0.02 0.86 16 45 H 0.04 1.37 7.82 -2.39 -0.02 1.35 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.06 1.31 6.34 -2.39 -0.02 1.30 16 49 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 50 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -80.28 409.94 2.04 -78.24 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: 0.26 Total: 28.48 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.20 Total: 19.24 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -6.50 Total: -137.02 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.96 Total: -36.85 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -80.28 2.04 -78.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974865695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.036 kcal (2) G-P(sol) polarization free energy of solvation -80.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds