Wall clock time and date at job start Wed Apr 1 2020 04:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35678 * 117.00042 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.68755 * 179.73037 * 4 3 2 6 6 C 1.38371 * 119.11276 * 179.71087 * 5 4 3 7 7 C 1.38830 * 118.48346 * 0.54396 * 6 5 4 8 8 C 1.38052 * 119.29180 * 359.73423 * 7 6 5 9 9 C 1.50695 * 119.58288 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47109 * 124.97856 * 9 8 7 11 11 O 1.21286 * 119.99588 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00516 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00297 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47085 * 34.99933 * 13 12 10 15 15 C 1.52998 * 109.47084 * 274.99900 * 13 12 10 16 16 C 1.52997 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47002 * 60.00085 * 16 15 13 18 18 C 1.52998 * 109.47087 * 299.99967 * 17 16 15 19 19 H 1.08998 * 109.47186 * 299.99970 * 18 17 16 20 20 N 1.46500 * 109.46964 * 179.97438 * 18 17 16 21 21 C 1.36940 * 120.00048 * 85.00181 * 20 18 17 22 22 H 1.08000 * 119.99884 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99977 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99772 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46864 * 120.00272 * 25 23 21 28 28 H 1.48506 * 109.47146 * 240.00197 * 25 23 21 29 29 C 1.52997 * 109.47173 * 60.00137 * 18 17 16 30 30 N 1.31962 * 120.82978 * 359.97438 * 8 7 6 31 31 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 34 34 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 35 35 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 36 36 H 1.08000 * 120.44038 * 359.97438 * 5 4 3 37 37 H 1.07994 * 120.76040 * 180.27817 * 6 5 4 38 38 H 1.08006 * 120.35801 * 179.70706 * 7 6 5 39 39 H 1.08997 * 109.47546 * 244.97788 * 9 8 7 40 40 H 1.08999 * 109.47247 * 4.98014 * 9 8 7 41 41 H 0.97003 * 119.99433 * 359.97438 * 12 10 9 42 42 H 1.08998 * 109.47186 * 299.99971 * 15 13 12 43 43 H 1.09004 * 109.47257 * 60.00402 * 15 13 12 44 44 H 1.08999 * 109.47716 * 300.00065 * 16 15 13 45 45 H 1.08999 * 109.47328 * 180.02562 * 16 15 13 46 46 H 1.09003 * 109.46893 * 179.97438 * 17 16 15 47 47 H 1.08998 * 109.47082 * 60.00001 * 17 16 15 48 48 H 0.97005 * 120.00078 * 265.00082 * 20 18 17 49 49 H 0.97002 * 120.00332 * 179.97438 * 24 23 21 50 50 H 1.08992 * 109.47525 * 180.02562 * 29 18 17 51 51 H 1.08997 * 109.47297 * 59.99298 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8754 2.8117 -0.0062 6 6 5.2489 2.9793 -0.0006 7 6 6.0539 1.8482 -0.0010 8 6 5.4647 0.5997 -0.0014 9 6 6.3322 -0.6324 -0.0024 10 6 5.9560 -1.5127 1.1615 11 8 5.0708 -1.1726 1.9176 12 7 6.6031 -2.6778 1.3622 13 6 6.2369 -3.5337 2.4933 14 1 5.1628 -3.4673 2.6664 15 6 6.9848 -3.0717 3.7455 16 6 6.6019 -3.9651 4.9270 17 6 6.9788 -5.4145 4.6135 18 6 6.2309 -5.8765 3.3613 19 1 5.1568 -5.8097 3.5342 20 7 6.5923 -7.2641 3.0608 21 6 5.9301 -8.2927 3.6760 22 1 5.1416 -8.0811 4.3831 23 6 6.2722 -9.6075 3.3908 24 7 7.2333 -9.8654 2.5295 25 14 5.3692 -11.0106 4.2307 26 1 4.3405 -10.4584 5.1482 27 1 4.7124 -11.8606 3.2053 28 1 6.3367 -11.8284 5.0057 29 6 6.6138 -4.9830 2.1798 30 7 4.1513 0.4718 -0.0009 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 3.2194 3.6696 -0.0107 37 1 5.6848 3.9673 -0.0004 38 1 7.1297 1.9439 -0.0015 39 1 6.1856 -1.1793 -0.9338 40 1 7.3785 -0.3402 0.0864 41 1 7.3108 -2.9499 0.7572 42 1 8.0589 -3.1381 3.5724 43 1 6.7159 -2.0393 3.9692 44 1 5.5278 -3.8984 5.1000 45 1 7.1343 -3.6357 5.8192 46 1 6.7064 -6.0510 5.4554 47 1 8.0529 -5.4813 4.4405 48 1 7.3007 -7.4542 2.4259 49 1 7.4727 -10.7841 2.3305 50 1 6.0807 -5.3118 1.2878 51 1 7.6879 -5.0497 2.0069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981236986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:49 Heat of formation + Delta-G solvation = -45.970322 kcal Electronic energy + Delta-G solvation = -30209.376174 eV Core-core repulsion = 26108.535971 eV Total energy + Delta-G solvation = -4100.840203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.96663 -39.82423 -38.38135 -37.73018 -34.63862 -33.43170 -33.21572 -32.42009 -31.32324 -31.10581 -29.56719 -28.13883 -27.50034 -24.25130 -23.75306 -23.10970 -22.46778 -21.90825 -21.21610 -20.26557 -19.38032 -18.47334 -17.45991 -16.92700 -16.71150 -16.34418 -16.25274 -16.07787 -15.23971 -14.81477 -14.42074 -14.32944 -14.20470 -14.09585 -13.81644 -13.58452 -13.45525 -13.29695 -13.09774 -12.85888 -12.76252 -12.52420 -12.33336 -12.17656 -12.09627 -11.94139 -11.67696 -10.99497 -10.92018 -10.88554 -10.88460 -10.71487 -10.33147 -10.25317 -10.16238 -10.08636 -10.01254 -9.77823 -9.67327 -9.52079 -8.94240 -8.85217 -8.63937 -6.96116 -5.77242 -3.05630 0.87675 1.09434 2.68712 2.85425 3.12174 3.43080 3.49253 3.51082 3.62161 3.84644 4.40891 4.58140 4.73391 4.74088 4.84854 4.86015 4.86922 4.97984 5.02460 5.06908 5.11181 5.15797 5.24081 5.34525 5.43786 5.51338 5.54378 5.62228 5.66471 5.68311 5.70443 5.77202 5.84699 5.89030 5.92161 5.98670 6.04571 6.15463 6.19493 6.32260 6.36434 6.53116 6.56220 6.66176 6.74281 6.97576 7.09228 7.13121 7.55576 7.71386 7.72408 8.29250 8.41610 9.52861 10.10250 10.45040 11.45591 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002089 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.811299 B =13398.799292 C =14468.190588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.066 3.934 3 O -0.310 6.310 4 C 0.328 3.672 5 C -0.197 4.197 6 C -0.042 4.042 7 C -0.208 4.208 8 C 0.187 3.813 9 C -0.096 4.096 10 C 0.518 3.482 11 O -0.524 6.524 12 N -0.726 5.726 13 C 0.151 3.849 14 H 0.086 0.914 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.183 3.817 19 H 0.048 0.952 20 N -0.725 5.725 21 C -0.235 4.235 22 H 0.071 0.929 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.128 4.128 30 N -0.511 5.511 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.398 0.602 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.286 26.940 -7.816 28.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.149 3.851 5 C -0.217 4.217 6 C -0.067 4.067 7 C -0.228 4.228 8 C 0.049 3.951 9 C -0.136 4.136 10 C 0.303 3.697 11 O -0.399 6.399 12 N -0.377 5.377 13 C 0.046 3.954 14 H 0.104 0.896 15 C -0.161 4.161 16 C -0.153 4.153 17 C -0.177 4.177 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.365 5.365 21 C -0.366 4.366 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.167 4.167 30 N -0.234 5.234 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.232 0.768 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.690 26.406 -7.171 27.610 hybrid contribution 0.655 -0.490 -0.036 0.819 sum -3.035 25.916 -7.207 27.070 Atomic orbital electron populations 1.21822 0.93100 1.03014 1.03019 1.22621 0.94549 0.80738 1.02986 1.86201 1.16822 1.31057 1.87629 1.19745 0.84113 0.89693 0.91569 1.21052 0.95937 0.95757 1.08993 1.21323 0.92302 0.99272 0.93809 1.21741 1.01285 0.92513 1.07289 1.20159 0.88707 0.93419 0.92815 1.20676 0.99676 0.93610 0.99687 1.20161 0.82009 0.81629 0.85937 1.90735 1.30068 1.72317 1.46734 1.46136 1.39401 1.21177 1.31022 1.20989 1.00337 0.89217 0.84841 0.89610 1.21869 1.00009 0.99253 0.95012 1.21484 1.01102 0.96031 0.96727 1.22286 1.00786 0.93836 1.00764 1.20095 0.96947 0.84981 0.90682 0.93422 1.42414 1.43298 0.99001 1.51771 1.19292 1.13097 0.85749 1.18505 0.91112 1.24736 0.99160 0.97278 0.99917 1.69666 1.32330 1.18652 1.37598 0.86136 0.78854 0.82700 0.78645 1.20543 1.21908 1.21910 1.22081 1.01666 0.92534 1.00457 1.67048 1.05776 1.33102 1.17482 0.91870 0.90188 0.91709 0.90999 0.91758 0.84317 0.84147 0.84568 0.86892 0.87086 0.76794 0.92112 0.92329 0.92254 0.92580 0.91940 0.92673 0.78347 0.93613 0.91358 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.07 0.74 6.03 37.16 0.22 0.96 16 3 O -0.31 -3.82 10.12 -18.74 -0.19 -4.01 16 4 C 0.33 4.08 7.49 -17.12 -0.13 3.96 16 5 C -0.20 -1.90 10.04 -39.28 -0.39 -2.29 16 6 C -0.04 -0.33 10.17 -39.31 -0.40 -0.73 16 7 C -0.21 -1.75 9.71 -39.43 -0.38 -2.13 16 8 C 0.19 2.02 5.76 -82.61 -0.48 1.54 16 9 C -0.10 -0.82 6.10 -29.04 -0.18 -1.00 16 10 C 0.52 6.42 7.73 -10.99 -0.08 6.33 16 11 O -0.52 -8.78 15.00 5.55 0.08 -8.70 16 12 N -0.73 -8.18 5.08 -53.81 -0.27 -8.46 16 13 C 0.15 2.10 2.45 -67.93 -0.17 1.93 16 14 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 15 C -0.12 -1.66 5.49 -26.73 -0.15 -1.81 16 16 C -0.11 -1.67 5.92 -26.73 -0.16 -1.83 16 17 C -0.14 -2.40 5.50 -26.73 -0.15 -2.55 16 18 C 0.18 3.56 2.77 -67.93 -0.19 3.37 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 N -0.72 -17.80 5.12 -53.43 -0.27 -18.07 16 21 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -27.97 13.06 55.49 0.72 -27.25 16 25 Si 0.91 22.39 29.55 -169.99 -5.02 17.36 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 C -0.13 -2.01 4.86 -26.73 -0.13 -2.14 16 30 N -0.51 -6.73 8.08 -9.55 -0.08 -6.81 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.14 0.74 7.94 -52.48 -0.42 0.32 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.11 0.58 7.86 -51.93 -0.41 0.17 16 41 H 0.40 3.36 8.60 -40.82 -0.35 3.01 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 417.09 15.07 6.29 6.29 Total: -1.00 -34.48 417.09 -9.98 -44.46 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.61 Total: 9.59 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -2.62 Total: -4.42 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 0.10 Total: -60.58 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.11 Total: -12.70 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -34.48 -9.98 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981236986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.514 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds