Wall clock time and date at job start Wed Apr 1 2020 04:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 C 1.35678 * 117.00042 * 180.02562 * 3 2 1 5 5 C 1.38924 * 119.68755 * 179.73037 * 4 3 2 6 6 C 1.38371 * 119.11276 * 179.71087 * 5 4 3 7 7 C 1.38830 * 118.48346 * 0.54396 * 6 5 4 8 8 C 1.38052 * 119.29180 * 359.73423 * 7 6 5 9 9 C 1.50695 * 119.58288 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47109 * 124.97856 * 9 8 7 11 11 O 1.21286 * 119.99588 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00516 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00297 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47085 * 34.99933 * 13 12 10 15 15 C 1.52998 * 109.47084 * 274.99900 * 13 12 10 16 16 C 1.52997 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47002 * 60.00085 * 16 15 13 18 18 C 1.52998 * 109.47087 * 299.99967 * 17 16 15 19 19 H 1.08998 * 109.47186 * 299.99970 * 18 17 16 20 20 N 1.46500 * 109.46964 * 179.97438 * 18 17 16 21 21 C 1.36940 * 120.00048 * 85.00181 * 20 18 17 22 22 H 1.08000 * 119.99884 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99977 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00075 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99772 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46864 * 120.00272 * 25 23 21 28 28 H 1.48506 * 109.47146 * 240.00197 * 25 23 21 29 29 C 1.52997 * 109.47173 * 60.00137 * 18 17 16 30 30 N 1.31962 * 120.82978 * 359.97438 * 8 7 6 31 31 H 1.09001 * 109.46998 * 59.99965 * 1 2 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46801 * 300.00369 * 1 2 3 34 34 H 1.09001 * 109.47002 * 119.99477 * 2 1 3 35 35 H 1.08993 * 109.46955 * 239.99914 * 2 1 3 36 36 H 1.08000 * 120.44038 * 359.97438 * 5 4 3 37 37 H 1.07994 * 120.76040 * 180.27817 * 6 5 4 38 38 H 1.08006 * 120.35801 * 179.70706 * 7 6 5 39 39 H 1.08997 * 109.47546 * 244.97788 * 9 8 7 40 40 H 1.08999 * 109.47247 * 4.98014 * 9 8 7 41 41 H 0.97003 * 119.99433 * 359.97438 * 12 10 9 42 42 H 1.08998 * 109.47186 * 299.99971 * 15 13 12 43 43 H 1.09004 * 109.47257 * 60.00402 * 15 13 12 44 44 H 1.08999 * 109.47716 * 300.00065 * 16 15 13 45 45 H 1.08999 * 109.47328 * 180.02562 * 16 15 13 46 46 H 1.09003 * 109.46893 * 179.97438 * 17 16 15 47 47 H 1.08998 * 109.47082 * 60.00001 * 17 16 15 48 48 H 0.97005 * 120.00078 * 265.00082 * 20 18 17 49 49 H 0.97002 * 120.00332 * 179.97438 * 24 23 21 50 50 H 1.08992 * 109.47525 * 180.02562 * 29 18 17 51 51 H 1.08997 * 109.47297 * 59.99298 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5250 -0.0005 5 6 3.8754 2.8117 -0.0062 6 6 5.2489 2.9793 -0.0006 7 6 6.0539 1.8482 -0.0010 8 6 5.4647 0.5997 -0.0014 9 6 6.3322 -0.6324 -0.0024 10 6 5.9560 -1.5127 1.1615 11 8 5.0708 -1.1726 1.9176 12 7 6.6031 -2.6778 1.3622 13 6 6.2369 -3.5337 2.4933 14 1 5.1628 -3.4673 2.6664 15 6 6.9848 -3.0717 3.7455 16 6 6.6019 -3.9651 4.9270 17 6 6.9788 -5.4145 4.6135 18 6 6.2309 -5.8765 3.3613 19 1 5.1568 -5.8097 3.5342 20 7 6.5923 -7.2641 3.0608 21 6 5.9301 -8.2927 3.6760 22 1 5.1416 -8.0811 4.3831 23 6 6.2722 -9.6075 3.3908 24 7 7.2333 -9.8654 2.5295 25 14 5.3692 -11.0106 4.2307 26 1 4.3405 -10.4584 5.1482 27 1 4.7124 -11.8606 3.2053 28 1 6.3367 -11.8284 5.0057 29 6 6.6138 -4.9830 2.1798 30 7 4.1513 0.4718 -0.0009 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 3.2194 3.6696 -0.0107 37 1 5.6848 3.9673 -0.0004 38 1 7.1297 1.9439 -0.0015 39 1 6.1856 -1.1793 -0.9338 40 1 7.3785 -0.3402 0.0864 41 1 7.3108 -2.9499 0.7572 42 1 8.0589 -3.1381 3.5724 43 1 6.7159 -2.0393 3.9692 44 1 5.5278 -3.8984 5.1000 45 1 7.1343 -3.6357 5.8192 46 1 6.7064 -6.0510 5.4554 47 1 8.0529 -5.4813 4.4405 48 1 7.3007 -7.4542 2.4259 49 1 7.4727 -10.7841 2.3305 50 1 6.0807 -5.3118 1.2878 51 1 7.6879 -5.0497 2.0069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981236986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:48 Heat of formation + Delta-G solvation = -70.023373 kcal Electronic energy + Delta-G solvation = -30210.419192 eV Core-core repulsion = 26108.535971 eV Total energy + Delta-G solvation = -4101.883221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.73960 -40.87070 -39.42166 -38.81006 -36.20906 -34.78510 -34.05988 -33.15072 -32.94023 -32.10611 -30.74112 -29.56561 -28.53316 -25.72020 -24.99066 -23.98087 -23.38113 -23.10032 -22.41754 -21.34510 -20.76205 -19.30044 -19.18095 -18.10592 -17.61968 -17.29814 -17.20006 -16.85733 -16.40665 -16.16687 -15.91106 -15.40475 -15.19032 -15.16201 -15.02943 -14.88979 -14.82320 -14.34526 -14.21006 -13.92403 -13.64420 -13.44586 -13.41975 -13.29626 -12.95581 -12.90827 -12.84061 -12.76265 -12.46768 -12.25304 -12.13480 -12.03142 -11.97824 -11.72098 -11.64554 -11.47717 -11.37484 -10.89183 -10.83943 -10.73294 -10.45603 -9.98179 -9.38622 -9.00287 -7.94779 -5.22364 0.16376 0.41741 1.46434 1.46765 1.56647 1.75376 2.09152 2.19479 2.55945 2.86926 3.14016 3.38533 3.64480 3.80196 3.86940 3.93349 4.01734 4.05646 4.06849 4.16719 4.21579 4.28022 4.31601 4.37495 4.40847 4.46441 4.52094 4.53866 4.56912 4.57789 4.68280 4.76411 4.81185 4.83615 4.89274 5.02517 5.04484 5.14235 5.16353 5.17677 5.21706 5.27244 5.35375 5.49703 5.51282 5.56059 5.58157 5.66720 6.28250 6.28473 6.66759 6.98367 7.34584 7.38259 8.10141 8.34341 9.28709 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.002089 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.811299 B =13398.799292 C =14468.190588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 O -0.322 6.322 4 C 0.291 3.709 5 C -0.202 4.202 6 C -0.038 4.038 7 C -0.199 4.199 8 C 0.157 3.843 9 C -0.087 4.087 10 C 0.515 3.485 11 O -0.573 6.573 12 N -0.715 5.715 13 C 0.161 3.839 14 H 0.058 0.942 15 C -0.113 4.113 16 C -0.107 4.107 17 C -0.125 4.125 18 C 0.177 3.823 19 H 0.031 0.969 20 N -0.735 5.735 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.968 3.032 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.293 1.293 29 C -0.113 4.113 30 N -0.544 5.544 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.057 0.943 36 H 0.154 0.846 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.129 0.871 40 H 0.154 0.846 41 H 0.416 0.584 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.056 0.944 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.058 0.942 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 29.161 -8.198 30.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.005 4.005 3 O -0.230 6.230 4 C 0.112 3.888 5 C -0.223 4.223 6 C -0.063 4.063 7 C -0.219 4.219 8 C 0.020 3.980 9 C -0.127 4.127 10 C 0.302 3.698 11 O -0.451 6.451 12 N -0.367 5.367 13 C 0.056 3.944 14 H 0.076 0.924 15 C -0.152 4.152 16 C -0.146 4.146 17 C -0.166 4.166 18 C 0.068 3.932 19 H 0.049 0.951 20 N -0.375 5.375 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.797 3.203 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.220 1.220 29 C -0.152 4.152 30 N -0.268 5.268 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.172 0.828 37 H 0.197 0.803 38 H 0.191 0.809 39 H 0.147 0.853 40 H 0.172 0.828 41 H 0.252 0.748 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.181 28.663 -7.560 29.723 hybrid contribution 0.210 -1.093 0.086 1.117 sum -1.971 27.569 -7.474 28.632 Atomic orbital electron populations 1.21811 0.90914 1.03961 1.03537 1.22565 0.96211 0.80521 1.01213 1.86175 1.17543 1.31171 1.88131 1.20193 0.84067 0.90880 0.93660 1.21396 0.97371 0.95086 1.08438 1.21836 0.91374 1.01040 0.92062 1.22193 1.03197 0.91529 1.04960 1.20688 0.88274 0.95344 0.93733 1.20778 1.01486 0.92270 0.98171 1.20876 0.80952 0.81696 0.86319 1.90726 1.32178 1.73433 1.48770 1.45951 1.39683 1.20590 1.30468 1.20647 0.98903 0.88581 0.86317 0.92353 1.21779 1.00819 0.98661 0.93902 1.21417 1.00986 0.94038 0.98169 1.22085 1.00372 0.95456 0.98649 1.20300 0.96277 0.83448 0.93179 0.95092 1.42574 1.42892 1.00561 1.51465 1.19597 1.12607 0.86741 1.17810 0.91176 1.25487 1.00453 0.99610 1.01186 1.69800 1.34000 1.18735 1.39300 0.85152 0.77821 0.79648 0.77648 1.19407 1.22069 1.21980 1.21858 1.02296 0.92798 0.98234 1.66985 1.07272 1.34097 1.18416 0.90808 0.89017 0.91626 0.93846 0.92422 0.82831 0.80300 0.80909 0.85310 0.82793 0.74752 0.90345 0.92371 0.92922 0.90608 0.94162 0.92500 0.79345 0.94049 0.92275 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16 2 C 0.07 1.69 6.03 71.98 0.43 2.13 16 3 O -0.32 -8.39 10.12 -89.96 -0.91 -9.30 16 4 C 0.29 7.42 7.49 84.79 0.63 8.05 16 5 C -0.20 -3.70 10.04 22.47 0.23 -3.48 16 6 C -0.04 -0.48 10.17 22.44 0.23 -0.25 16 7 C -0.20 -2.68 9.71 22.37 0.22 -2.47 16 8 C 0.16 3.14 5.76 42.49 0.24 3.39 16 9 C -0.09 -1.27 6.10 29.10 0.18 -1.09 16 10 C 0.51 12.12 7.73 87.66 0.68 12.80 16 11 O -0.57 -19.44 15.00 -3.05 -0.05 -19.49 16 12 N -0.71 -14.87 5.08 -442.54 -2.25 -17.12 16 13 C 0.16 4.37 2.45 44.99 0.11 4.48 16 14 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16 15 C -0.11 -2.85 5.49 30.59 0.17 -2.69 16 16 C -0.11 -3.01 5.92 30.59 0.18 -2.83 16 17 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16 18 C 0.18 6.93 2.77 44.99 0.12 7.05 16 19 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 20 N -0.74 -36.68 5.12 -322.95 -1.65 -38.33 16 21 C -0.24 -13.14 9.93 84.03 0.83 -12.30 16 22 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 24 N -0.97 -58.79 13.06 21.65 0.28 -58.50 16 25 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 29 C -0.11 -3.48 4.86 30.59 0.15 -3.33 16 30 N -0.54 -14.57 8.08 -296.99 -2.40 -16.97 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 38 H 0.17 0.96 7.94 -2.91 -0.02 0.94 16 39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.15 0.86 7.86 -2.39 -0.02 0.84 16 41 H 0.42 5.85 8.60 -92.71 -0.80 5.05 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.37 19.74 7.80 -92.70 -0.72 19.02 16 49 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16 50 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -78.53 417.09 0.24 -78.29 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.59 Total: 33.22 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.78 Total: -0.34 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -6.02 Total: -130.93 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.96 Total: -28.79 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -78.53 0.24 -78.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981236986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.265 kcal (2) G-P(sol) polarization free energy of solvation -78.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds