Wall clock time and date at job start Wed Apr 1 2020 04:55:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42895 * 109.47036 * 2 1
4 4 C 1.35678 * 117.00042 * 180.02562 * 3 2 1
5 5 C 1.38924 * 119.68755 * 179.73037 * 4 3 2
6 6 C 1.38371 * 119.11276 * 179.71087 * 5 4 3
7 7 C 1.38830 * 118.48346 * 0.54396 * 6 5 4
8 8 C 1.38052 * 119.29180 * 359.73423 * 7 6 5
9 9 C 1.50695 * 119.58288 * 179.97438 * 8 7 6
10 10 C 1.50701 * 109.47109 * 124.97856 * 9 8 7
11 11 O 1.21286 * 119.99588 * 359.97438 * 10 9 8
12 12 N 1.34775 * 120.00516 * 179.97438 * 10 9 8
13 13 C 1.46496 * 120.00297 * 180.02562 * 12 10 9
14 14 H 1.08998 * 109.47085 * 34.99933 * 13 12 10
15 15 C 1.52998 * 109.47084 * 274.99900 * 13 12 10
16 16 C 1.52997 * 109.47173 * 179.97438 * 15 13 12
17 17 C 1.53004 * 109.47002 * 60.00085 * 16 15 13
18 18 C 1.52998 * 109.47087 * 299.99967 * 17 16 15
19 19 H 1.08998 * 109.47186 * 299.99970 * 18 17 16
20 20 N 1.46500 * 109.46964 * 179.97438 * 18 17 16
21 21 C 1.36940 * 120.00048 * 85.00181 * 20 18 17
22 22 H 1.08000 * 119.99884 * 359.97438 * 21 20 18
23 23 C 1.38813 * 119.99977 * 179.97438 * 21 20 18
24 24 N 1.31615 * 120.00075 * 0.02562 * 23 21 20
25 25 Si 1.86797 * 119.99772 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47312 * 0.02562 * 25 23 21
27 27 H 1.48504 * 109.46864 * 120.00272 * 25 23 21
28 28 H 1.48506 * 109.47146 * 240.00197 * 25 23 21
29 29 C 1.52997 * 109.47173 * 60.00137 * 18 17 16
30 30 N 1.31962 * 120.82978 * 359.97438 * 8 7 6
31 31 H 1.09001 * 109.46998 * 59.99965 * 1 2 3
32 32 H 1.09000 * 109.47050 * 180.02562 * 1 2 3
33 33 H 1.09001 * 109.46801 * 300.00369 * 1 2 3
34 34 H 1.09001 * 109.47002 * 119.99477 * 2 1 3
35 35 H 1.08993 * 109.46955 * 239.99914 * 2 1 3
36 36 H 1.08000 * 120.44038 * 359.97438 * 5 4 3
37 37 H 1.07994 * 120.76040 * 180.27817 * 6 5 4
38 38 H 1.08006 * 120.35801 * 179.70706 * 7 6 5
39 39 H 1.08997 * 109.47546 * 244.97788 * 9 8 7
40 40 H 1.08999 * 109.47247 * 4.98014 * 9 8 7
41 41 H 0.97003 * 119.99433 * 359.97438 * 12 10 9
42 42 H 1.08998 * 109.47186 * 299.99971 * 15 13 12
43 43 H 1.09004 * 109.47257 * 60.00402 * 15 13 12
44 44 H 1.08999 * 109.47716 * 300.00065 * 16 15 13
45 45 H 1.08999 * 109.47328 * 180.02562 * 16 15 13
46 46 H 1.09003 * 109.46893 * 179.97438 * 17 16 15
47 47 H 1.08998 * 109.47082 * 60.00001 * 17 16 15
48 48 H 0.97005 * 120.00078 * 265.00082 * 20 18 17
49 49 H 0.97002 * 120.00332 * 179.97438 * 24 23 21
50 50 H 1.08992 * 109.47525 * 180.02562 * 29 18 17
51 51 H 1.08997 * 109.47297 * 59.99298 * 29 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0064 1.3472 0.0000
4 6 3.3514 1.5250 -0.0005
5 6 3.8754 2.8117 -0.0062
6 6 5.2489 2.9793 -0.0006
7 6 6.0539 1.8482 -0.0010
8 6 5.4647 0.5997 -0.0014
9 6 6.3322 -0.6324 -0.0024
10 6 5.9560 -1.5127 1.1615
11 8 5.0708 -1.1726 1.9176
12 7 6.6031 -2.6778 1.3622
13 6 6.2369 -3.5337 2.4933
14 1 5.1628 -3.4673 2.6664
15 6 6.9848 -3.0717 3.7455
16 6 6.6019 -3.9651 4.9270
17 6 6.9788 -5.4145 4.6135
18 6 6.2309 -5.8765 3.3613
19 1 5.1568 -5.8097 3.5342
20 7 6.5923 -7.2641 3.0608
21 6 5.9301 -8.2927 3.6760
22 1 5.1416 -8.0811 4.3831
23 6 6.2722 -9.6075 3.3908
24 7 7.2333 -9.8654 2.5295
25 14 5.3692 -11.0106 4.2307
26 1 4.3405 -10.4584 5.1482
27 1 4.7124 -11.8606 3.2053
28 1 6.3367 -11.8284 5.0057
29 6 6.6138 -4.9830 2.1798
30 7 4.1513 0.4718 -0.0009
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0277 0.0005
33 1 -0.3633 0.5139 0.8900
34 1 1.8934 -0.5138 0.8900
35 1 1.8933 -0.5138 -0.8899
36 1 3.2194 3.6696 -0.0107
37 1 5.6848 3.9673 -0.0004
38 1 7.1297 1.9439 -0.0015
39 1 6.1856 -1.1793 -0.9338
40 1 7.3785 -0.3402 0.0864
41 1 7.3108 -2.9499 0.7572
42 1 8.0589 -3.1381 3.5724
43 1 6.7159 -2.0393 3.9692
44 1 5.5278 -3.8984 5.1000
45 1 7.1343 -3.6357 5.8192
46 1 6.7064 -6.0510 5.4554
47 1 8.0529 -5.4813 4.4405
48 1 7.3007 -7.4542 2.4259
49 1 7.4727 -10.7841 2.3305
50 1 6.0807 -5.3118 1.2878
51 1 7.6879 -5.0497 2.0069
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000981236986.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:55:48
Heat of formation + Delta-G solvation = -70.023373 kcal
Electronic energy + Delta-G solvation = -30210.419192 eV
Core-core repulsion = 26108.535971 eV
Total energy + Delta-G solvation = -4101.883221 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.73960 -40.87070 -39.42166 -38.81006 -36.20906 -34.78510 -34.05988 -33.15072
-32.94023 -32.10611 -30.74112 -29.56561 -28.53316 -25.72020 -24.99066 -23.98087
-23.38113 -23.10032 -22.41754 -21.34510 -20.76205 -19.30044 -19.18095 -18.10592
-17.61968 -17.29814 -17.20006 -16.85733 -16.40665 -16.16687 -15.91106 -15.40475
-15.19032 -15.16201 -15.02943 -14.88979 -14.82320 -14.34526 -14.21006 -13.92403
-13.64420 -13.44586 -13.41975 -13.29626 -12.95581 -12.90827 -12.84061 -12.76265
-12.46768 -12.25304 -12.13480 -12.03142 -11.97824 -11.72098 -11.64554 -11.47717
-11.37484 -10.89183 -10.83943 -10.73294 -10.45603 -9.98179 -9.38622 -9.00287
-7.94779 -5.22364 0.16376 0.41741 1.46434 1.46765 1.56647 1.75376
2.09152 2.19479 2.55945 2.86926 3.14016 3.38533 3.64480 3.80196
3.86940 3.93349 4.01734 4.05646 4.06849 4.16719 4.21579 4.28022
4.31601 4.37495 4.40847 4.46441 4.52094 4.53866 4.56912 4.57789
4.68280 4.76411 4.81185 4.83615 4.89274 5.02517 5.04484 5.14235
5.16353 5.17677 5.21706 5.27244 5.35375 5.49703 5.51282 5.56059
5.58157 5.66720 6.28250 6.28473 6.66759 6.98367 7.34584 7.38259
8.10141 8.34341 9.28709
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014139 B = 0.002089 C = 0.001935
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1979.811299 B =13398.799292 C =14468.190588
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.070 3.930
3 O -0.322 6.322
4 C 0.291 3.709
5 C -0.202 4.202
6 C -0.038 4.038
7 C -0.199 4.199
8 C 0.157 3.843
9 C -0.087 4.087
10 C 0.515 3.485
11 O -0.573 6.573
12 N -0.715 5.715
13 C 0.161 3.839
14 H 0.058 0.942
15 C -0.113 4.113
16 C -0.107 4.107
17 C -0.125 4.125
18 C 0.177 3.823
19 H 0.031 0.969
20 N -0.735 5.735
21 C -0.236 4.236
22 H 0.070 0.930
23 C -0.075 4.075
24 N -0.967 5.967
25 Si 0.968 3.032
26 H -0.270 1.270
27 H -0.293 1.293
28 H -0.293 1.293
29 C -0.113 4.113
30 N -0.544 5.544
31 H 0.073 0.927
32 H 0.091 0.909
33 H 0.065 0.935
34 H 0.043 0.957
35 H 0.057 0.943
36 H 0.154 0.846
37 H 0.180 0.820
38 H 0.173 0.827
39 H 0.129 0.871
40 H 0.154 0.846
41 H 0.416 0.584
42 H 0.078 0.922
43 H 0.058 0.942
44 H 0.052 0.948
45 H 0.075 0.925
46 H 0.040 0.960
47 H 0.056 0.944
48 H 0.374 0.626
49 H 0.251 0.749
50 H 0.058 0.942
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.792 29.161 -8.198 30.302
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.005 4.005
3 O -0.230 6.230
4 C 0.112 3.888
5 C -0.223 4.223
6 C -0.063 4.063
7 C -0.219 4.219
8 C 0.020 3.980
9 C -0.127 4.127
10 C 0.302 3.698
11 O -0.451 6.451
12 N -0.367 5.367
13 C 0.056 3.944
14 H 0.076 0.924
15 C -0.152 4.152
16 C -0.146 4.146
17 C -0.166 4.166
18 C 0.068 3.932
19 H 0.049 0.951
20 N -0.375 5.375
21 C -0.368 4.368
22 H 0.088 0.912
23 C -0.267 4.267
24 N -0.618 5.618
25 Si 0.797 3.203
26 H -0.194 1.194
27 H -0.221 1.221
28 H -0.220 1.220
29 C -0.152 4.152
30 N -0.268 5.268
31 H 0.092 0.908
32 H 0.110 0.890
33 H 0.084 0.916
34 H 0.062 0.938
35 H 0.076 0.924
36 H 0.172 0.828
37 H 0.197 0.803
38 H 0.191 0.809
39 H 0.147 0.853
40 H 0.172 0.828
41 H 0.252 0.748
42 H 0.097 0.903
43 H 0.076 0.924
44 H 0.071 0.929
45 H 0.094 0.906
46 H 0.058 0.942
47 H 0.075 0.925
48 H 0.207 0.793
49 H 0.060 0.940
50 H 0.077 0.923
51 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -2.181 28.663 -7.560 29.723
hybrid contribution 0.210 -1.093 0.086 1.117
sum -1.971 27.569 -7.474 28.632
Atomic orbital electron populations
1.21811 0.90914 1.03961 1.03537 1.22565 0.96211 0.80521 1.01213
1.86175 1.17543 1.31171 1.88131 1.20193 0.84067 0.90880 0.93660
1.21396 0.97371 0.95086 1.08438 1.21836 0.91374 1.01040 0.92062
1.22193 1.03197 0.91529 1.04960 1.20688 0.88274 0.95344 0.93733
1.20778 1.01486 0.92270 0.98171 1.20876 0.80952 0.81696 0.86319
1.90726 1.32178 1.73433 1.48770 1.45951 1.39683 1.20590 1.30468
1.20647 0.98903 0.88581 0.86317 0.92353 1.21779 1.00819 0.98661
0.93902 1.21417 1.00986 0.94038 0.98169 1.22085 1.00372 0.95456
0.98649 1.20300 0.96277 0.83448 0.93179 0.95092 1.42574 1.42892
1.00561 1.51465 1.19597 1.12607 0.86741 1.17810 0.91176 1.25487
1.00453 0.99610 1.01186 1.69800 1.34000 1.18735 1.39300 0.85152
0.77821 0.79648 0.77648 1.19407 1.22069 1.21980 1.21858 1.02296
0.92798 0.98234 1.66985 1.07272 1.34097 1.18416 0.90808 0.89017
0.91626 0.93846 0.92422 0.82831 0.80300 0.80909 0.85310 0.82793
0.74752 0.90345 0.92371 0.92922 0.90608 0.94162 0.92500 0.79345
0.94049 0.92275 0.90279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.48 10.28 71.98 0.74 -1.74 16
2 C 0.07 1.69 6.03 71.98 0.43 2.13 16
3 O -0.32 -8.39 10.12 -89.96 -0.91 -9.30 16
4 C 0.29 7.42 7.49 84.79 0.63 8.05 16
5 C -0.20 -3.70 10.04 22.47 0.23 -3.48 16
6 C -0.04 -0.48 10.17 22.44 0.23 -0.25 16
7 C -0.20 -2.68 9.71 22.37 0.22 -2.47 16
8 C 0.16 3.14 5.76 42.49 0.24 3.39 16
9 C -0.09 -1.27 6.10 29.10 0.18 -1.09 16
10 C 0.51 12.12 7.73 87.66 0.68 12.80 16
11 O -0.57 -19.44 15.00 -3.05 -0.05 -19.49 16
12 N -0.71 -14.87 5.08 -442.54 -2.25 -17.12 16
13 C 0.16 4.37 2.45 44.99 0.11 4.48 16
14 H 0.06 1.94 7.58 -2.39 -0.02 1.92 16
15 C -0.11 -2.85 5.49 30.59 0.17 -2.69 16
16 C -0.11 -3.01 5.92 30.59 0.18 -2.83 16
17 C -0.13 -4.38 5.50 30.59 0.17 -4.21 16
18 C 0.18 6.93 2.77 44.99 0.12 7.05 16
19 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16
20 N -0.74 -36.68 5.12 -322.95 -1.65 -38.33 16
21 C -0.24 -13.14 9.93 84.03 0.83 -12.30 16
22 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16
23 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16
24 N -0.97 -58.79 13.06 21.65 0.28 -58.50 16
25 Si 0.97 46.52 29.55 68.60 2.03 48.55 16
26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
27 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16
28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16
29 C -0.11 -3.48 4.86 30.59 0.15 -3.33 16
30 N -0.54 -14.57 8.08 -296.99 -2.40 -16.97 16
31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
34 H 0.04 1.25 8.10 -2.39 -0.02 1.23 16
35 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16
36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16
37 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16
38 H 0.17 0.96 7.94 -2.91 -0.02 0.94 16
39 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16
40 H 0.15 0.86 7.86 -2.39 -0.02 0.84 16
41 H 0.42 5.85 8.60 -92.71 -0.80 5.05 16
42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
43 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16
44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16
47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
48 H 0.37 19.74 7.80 -92.70 -0.72 19.02 16
49 H 0.25 14.76 8.31 -92.71 -0.77 13.98 16
50 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
51 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
Total: -1.00 -78.53 417.09 0.24 -78.29
By element:
Atomic # 1 Polarization: 33.82 SS G_CDS: -0.59 Total: 33.22 kcal
Atomic # 6 Polarization: -6.13 SS G_CDS: 5.78 Total: -0.34 kcal
Atomic # 7 Polarization: -124.91 SS G_CDS: -6.02 Total: -130.93 kcal
Atomic # 8 Polarization: -27.83 SS G_CDS: -0.96 Total: -28.79 kcal
Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal
Total: -78.53 0.24 -78.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000981236986.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.265 kcal
(2) G-P(sol) polarization free energy of solvation -78.534 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.023 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds